Rh7DG329300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000153
Physical Location & Seq
Reverse (-)
39971379 .. 39971876
498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG329300.1

Sequence Viewer

Length: 498 bp
ATGGAGAAGTACTCTCCTCATAGAGTTAAGAGGCAATTTGGCATCGACCAGGATGTGCCATCGCATCTATCCTATGGTGGACATCTTGGGGATTGCATCATGGGTTTCACTCGGACAAATGGTATTTCCTGCAGGGGTATGCTCTCTGATAGTCTCGGGAAGAAAGGCTGTGTTGGATCCCCTACATCAACATTCTTGAGGTTTTGGGAGTTGCAGCGGTGCGAGTTTAGGAGGTTTATTCAAACTGGTGGGACTAGGTTGCGTCCGAAAGCCACTAGTGAGAACAAGAGACTACTCCACAGTAGCACTGTCATGGGTGTCATGTCTAGACTTAACCTTCCCTATACTGAGGTATACTCGAATGGTATGAAGCGTGTGGTTGGTCACCTTAAGGGTGGTAAAAGTGAAGATGATCCTGAAGTAGAGTTGCCAGCTGCCGGAGTGGGGAAAGGTAGCAAGAGCGCTACAAAGGGTAAAGTCAGGGCTTTCGAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

165

Amino Acids

18.21

Weight (kDa)

9.79

Isoelectric Point (pI)

43.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 354
AciI CCGC 1 cut(s) 217
AclWI GGATC 3 cut(s) 171, 184, 407
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 11
AfeI AGCGCT 1 cut(s) 463
AfiI CCNNNNNNNGG 2 cut(s) 437, 444
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 275
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw26I GTCTC 2 cut(s) 158, 283
AlwI GGATC 3 cut(s) 171, 184, 407
Ama87I CYCGRG 1 cut(s) 155
Aor51HI AGCGCT 1 cut(s) 463
ApeKI GCWGC 2 cut(s) 214, 434
AspLEI GCGC 1 cut(s) 464
AsuHPI GGTGA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 155
BamHI GGATCC 1 cut(s) 176
BbvI GCAGC 2 cut(s) 226, 421
BccI CCATC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 158, 283
BcuI ACTAGT 1 cut(s) 275
BfaI CTAG 3 cut(s) 255, 276, 327
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 465
BfrI CTTAAG 1 cut(s) 389
BisI GCNGC 2 cut(s) 215, 435
BlsI GCNGC 2 cut(s) 216, 436
BmcAI AGTACT 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 50
BmsI GCATC 3 cut(s) 51, 73, 105
BplI GAGNNNNNCTC 3 cut(s) 28, 341, 373
BpuEI CTTGAG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 444
Bse1I ACTGG 1 cut(s) 250
BseBI CCWGG 1 cut(s) 50
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 2 cut(s) 437, 444
BseMII CTCAG 1 cut(s) 339
BseNI ACTGG 1 cut(s) 250
BseRI GAGGAG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 226, 421
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 1 cut(s) 265
BslI CCNNNNNNNGG 2 cut(s) 437, 444
BsmAI GTCTC 2 cut(s) 158, 283
BsmFI GGGAC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 155
Bsp143I GATC 2 cut(s) 176, 412
BspACI CCGC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 178
BspMAI CTGCAG 1 cut(s) 134
BspPI GGATC 3 cut(s) 171, 184, 407
BspTI CTTAAG 1 cut(s) 389
BsrI ACTGG 1 cut(s) 250
BssMI GATC 2 cut(s) 176, 412
BssNAI GTATAC 1 cut(s) 355
Bst1107I GTATAC 1 cut(s) 355
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 302, 310
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 348
BstEII GGTNACC 1 cut(s) 383
BstF5I GGATG 1 cut(s) 58
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 2 cut(s) 179, 415
BstMAI GTCTC 2 cut(s) 158, 283
BstMBI GATC 2 cut(s) 176, 412
BstNI CCWGG 1 cut(s) 50
BstPI GGTNACC 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 226, 421
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 1 cut(s) 58
BtsIMutI CAGTG 1 cut(s) 306
Cac8I GCNNGC 1 cut(s) 432
CfoI GCGC 1 cut(s) 464
CseI GACGC 1 cut(s) 251
Csp6I GTAC 1 cut(s) 10
CviAII CATG 3 cut(s) 100, 313, 322
CviJI RGCY 4 cut(s) 168, 272, 434, 485
CviKI_1 RGCY 4 cut(s) 168, 272, 434, 485
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 348
DpnI GATC 2 cut(s) 178, 414
DpnII GATC 2 cut(s) 176, 412
Eco47III AGCGCT 1 cut(s) 463
Eco57I CTGAAG 1 cut(s) 438
Eco88I CYCGRG 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 383
EcoRII CCWGG 1 cut(s) 48
FaeI CATG 3 cut(s) 103, 316, 325
FaiI YATR 9 cut(s) 21, 75, 101, 140, 314, 323, 345, 355, 368
FaqI GGGAC 1 cut(s) 265
FatI CATG 3 cut(s) 99, 312, 321
FblI GTMKAC 1 cut(s) 354
Fnu4HI GCNGC 2 cut(s) 215, 435
FokI GGATG 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 215, 435
FspBI CTAG 3 cut(s) 255, 276, 327
GlaI GCGC 1 cut(s) 463
GluI GCNGC 2 cut(s) 215, 435
HaeII RGCGCY 1 cut(s) 465
HapII CCGG 1 cut(s) 438
HgaI GACGC 1 cut(s) 251
HhaI GCGC 1 cut(s) 464
Hin1II CATG 3 cut(s) 103, 316, 325
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 2 cut(s) 80, 355
Hpy188I TCNGA 3 cut(s) 114, 148, 267
Hpy188III TCNNGA 4 cut(s) 157, 196, 327, 416
Hpy8I GTNNAC 2 cut(s) 80, 355
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 2 cut(s) 302, 310
HpyCH4V TGCA 3 cut(s) 96, 132, 214
HpyF3I CTNAG 1 cut(s) 348
Hsp92II CATG 3 cut(s) 103, 316, 325
HspAI GCGC 1 cut(s) 462
Kzo9I GATC 2 cut(s) 176, 412
LpnPI CCDG 9 cut(s) 35, 62, 118, 142, 231, 429, 444, 451, 466
Lsp1109I GCAGC 2 cut(s) 226, 421
LweI GCATC 3 cut(s) 51, 73, 105
MaeI CTAG 3 cut(s) 255, 276, 327
MaeIII GTNAC 1 cut(s) 383
MalI GATC 2 cut(s) 178, 414
MboI GATC 2 cut(s) 176, 412
MboII GAAGA 2 cut(s) 172, 419
MflI RGATCY 1 cut(s) 176
MluCI AATT 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 6 cut(s) 24, 27, 192, 225, 343, 484
MseI TTAA 3 cut(s) 27, 333, 390
MslI CAYNNNNRTG 1 cut(s) 311
MspA1I CMGCKG 2 cut(s) 217, 434
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 50
MvaI CCWGG 1 cut(s) 50
NdeII GATC 2 cut(s) 176, 412
NlaIII CATG 3 cut(s) 103, 316, 325
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 383
PkrI GCNGC 2 cut(s) 216, 436
Psp6I CCWGG 1 cut(s) 48
PspEI GGTNACC 1 cut(s) 383
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 178
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 176
PvuII CAGCTG 1 cut(s) 434
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 311
SaqAI TTAA 3 cut(s) 27, 333, 390
SatI GCNGC 2 cut(s) 215, 435
Sau3AI GATC 2 cut(s) 176, 412
SbfI CCTGCAGG 1 cut(s) 134
ScaI AGTACT 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 50
SdaI CCTGCAGG 1 cut(s) 134
SetI ASST 8 cut(s) 203, 236, 260, 339, 354, 390, 436, 454
SfaNI GCATC 3 cut(s) 51, 73, 105
SfcI CTRYAG 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 2 cut(s) 196, 389
SmoI CTYRAG 2 cut(s) 196, 389
SpeI ACTAGT 1 cut(s) 275
Sse8387I CCTGCAGG 1 cut(s) 134
Sse9I AATT 1 cut(s) 35
SsiI CCGC 1 cut(s) 217
SspMI CTAG 3 cut(s) 255, 276, 327
StyD4I CCNGG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 302, 310
TaqI TCGA 3 cut(s) 45, 359, 489
TasI AATT 1 cut(s) 35
TatI WGTACW 1 cut(s) 9
Tru1I TTAA 3 cut(s) 27, 333, 390
Tru9I TTAA 3 cut(s) 27, 333, 390
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 2 cut(s) 214, 434
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 383
TspRI CASTG 1 cut(s) 313
Vha464I CTTAAG 1 cut(s) 389
XbaI TCTAGA 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 354
XspI CTAG 3 cut(s) 255, 276, 327
ZrmI AGTACT 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.