Rmu_sc0000103.1_g000058

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000103.1
OG0000153
Physical Location & Seq
Reverse (-)
291288 .. 292423
1136 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000103.1_g000058.1.cds

Sequence Viewer

Length: 966 bp
atggctcaagcgtctgagtcttctcagcctattgaacttcgtgaccaccacttctctctggaggatggtctcattcctacttccacccggggggtacaacaggaagagtttgaagaggcccttgttggagctgaagtgaagatttcactgtttatttttggcttttgtgaggtttacaaagatgacatttgccttcgccatgtggtgcgaagatggaggtttattcagactggtgggactaggttgtgtccgaaagccaatattgagaacaagagactactccgcagtaacactgtcttgggtgtcatgtctagacttaaccttccctatactgaggtatattcgaatggcatgaagtgtgtgattggtcatctcaagggtggcaaaggtggaggtgattccaaagtagagttgccagctgctagaatggagaagggtggcaagagtgtaacaaagggtaaagtcagggcttccgagggtagaggagaaagtaaaaggaaagttcgccgcttcaaacctaaggtggcaaaggatcgcatccctcctccagtaatcaagagttcctttggtgtcaaagtgatattgccatcgagtttggctagtgaaaaagggaagaagaggaaagctgcttctaccttgagacgacgtggggttactaaaagaaaggttatagatgatgcctcacctgctgtcctcaggcggagctctcgcgttgctaatatgagtttttctaaacctaaactgtcgtctaagggcgctgctcatgttgatcttagtgacgcgccaagtgacgacatcgaaggtagcccccttagtgataatgtcagtacacatgaggagaatgaatttgatacttatgagggaaagacatgcgatggcagcagttatgtatccttttctggcatgatcttcttcttcttttttggctacatgacgtgtgatttacttggtgttttcctttcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

321

Amino Acids

35.39

Weight (kDa)

9.66

Isoelectric Point (pI)

57.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 694
Acc36I ACCTGC 1 cut(s) 694
AccII CGCG 2 cut(s) 711, 782
AciI CCGC 3 cut(s) 283, 508, 700
AclWI GGATC 1 cut(s) 540
AcsI RAATTY 1 cut(s) 845
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 96, 829
AfiI CCNNNNNNNGG 1 cut(s) 90
AflIII ACRYGT 1 cut(s) 935
AgsI TTSAA 3 cut(s) 35, 113, 514
AjiI CACGTC 2 cut(s) 647, 936
AluBI AGCT 4 cut(s) 131, 419, 626, 705
AluI AGCT 4 cut(s) 131, 419, 626, 705
Alw21I GWGCWC 1 cut(s) 707
Alw26I GTCTC 3 cut(s) 74, 268, 634
AlwI GGATC 1 cut(s) 540
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 1 cut(s) 117
ApeKI GCWGC 4 cut(s) 419, 626, 758, 879
ApoI RAATTY 1 cut(s) 845
AspLEI GCGC 2 cut(s) 758, 784
AspS9I GGNCC 1 cut(s) 118
AsuC2I CCSGG 2 cut(s) 88, 89
AsuHPI GGTGA 2 cut(s) 407, 675
AsuII TTCGAA 1 cut(s) 344
AvaI CYCGRG 1 cut(s) 87
AxyI CCTNAGG 2 cut(s) 519, 695
BanII GRGCYC 1 cut(s) 707
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 707
BbvI GCAGC 4 cut(s) 406, 613, 745, 891
BccI CCATC 4 cut(s) 59, 207, 595, 869
BciVI GTATCC 1 cut(s) 901
BcnI CCSGG 2 cut(s) 88, 89
BcoDI GTCTC 3 cut(s) 74, 268, 634
BfaI CTAG 4 cut(s) 240, 312, 423, 600
BfoI RGCGCY 1 cut(s) 759
BfuAI ACCTGC 1 cut(s) 694
BfuI GTATCC 1 cut(s) 901
BisI GCNGC 5 cut(s) 420, 508, 627, 759, 880
BlsI GCNGC 5 cut(s) 421, 509, 628, 760, 881
Bme1390I CCNGG 2 cut(s) 88, 89
BmeT110I CYCGRG 1 cut(s) 87
BmgBI CACGTC 2 cut(s) 647, 936
BmgT120I GGNCC 1 cut(s) 118
BmrFI CCNGG 2 cut(s) 88, 89
BmsI GCATC 2 cut(s) 546, 667
BpiI GAAGAC 1 cut(s) 12
BpmI CTGGAG 2 cut(s) 80, 531
Bpu14I TTCGAA 1 cut(s) 344
BpuEI CTTGAG 2 cut(s) 359, 658
BpuMI CCSGG 2 cut(s) 88, 89
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 3 cut(s) 87, 88, 474
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 235, 548
Bse21I CCTNAGG 2 cut(s) 519, 695
BseDI CCNNGG 3 cut(s) 87, 88, 474
BseGI GGATG 2 cut(s) 70, 537
BseLI CCNNNNNNNGG 1 cut(s) 90
BseMII CTCAG 4 cut(s) 6, 38, 324, 709
BseNI ACTGG 2 cut(s) 235, 548
BseRI GAGGAG 3 cut(s) 498, 534, 851
BseXI GCAGC 4 cut(s) 406, 613, 745, 891
Bsh1236I CGCG 2 cut(s) 711, 782
BshFI GGCC 1 cut(s) 119
BsiHKAI GWGCWC 1 cut(s) 707
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 1 cut(s) 88
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 1 cut(s) 90
BsmAI GTCTC 3 cut(s) 74, 268, 634
BsmBI CGTCTC 1 cut(s) 634
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 1 cut(s) 119
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 87
Bsp119I TTCGAA 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 707
Bsp143I GATC 3 cut(s) 532, 769, 906
BspACI CCGC 3 cut(s) 283, 508, 700
BspANI GGCC 1 cut(s) 119
BspCNI CTCAG 4 cut(s) 7, 37, 325, 708
BspFNI CGCG 2 cut(s) 711, 782
BspMI ACCTGC 1 cut(s) 694
BspPI GGATC 1 cut(s) 540
BspT104I TTCGAA 1 cut(s) 344
BspTNI GGTCTC 1 cut(s) 74
BsrI ACTGG 2 cut(s) 235, 548
BssECI CCNNGG 3 cut(s) 87, 88, 474
BssMI GATC 3 cut(s) 532, 769, 906
Bst4CI ACNGT 3 cut(s) 150, 295, 744
Bst6I CTCTTC 3 cut(s) 99, 108, 611
BstBI TTCGAA 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 417
BstDEI CTNAG 8 cut(s) 15, 24, 333, 519, 695, 750, 773, 812
BstF5I GGATG 2 cut(s) 70, 537
BstFNI CGCG 2 cut(s) 711, 782
BstH2I RGCGCY 1 cut(s) 759
BstHHI GCGC 2 cut(s) 758, 784
BstKTI GATC 3 cut(s) 535, 772, 909
BstMAI GTCTC 3 cut(s) 74, 268, 634
BstMBI GATC 3 cut(s) 532, 769, 906
BstMWI GCNNNNNNNGC 2 cut(s) 686, 879
BstNSI RCATGY 1 cut(s) 873
BstSCI CCNGG 2 cut(s) 86, 87
BstUI CGCG 2 cut(s) 711, 782
BstV1I GCAGC 4 cut(s) 406, 613, 745, 891
BstV2I GAAGAC 1 cut(s) 12
Bsu36I CCTNAGG 2 cut(s) 519, 695
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 888
BtrI CACGTC 2 cut(s) 647, 936
BtsCI GGATG 2 cut(s) 70, 537
BtsIMutI CAGTG 2 cut(s) 146, 291
BveI ACCTGC 1 cut(s) 694
Cac8I GCNNGC 1 cut(s) 417
CfoI GCGC 2 cut(s) 758, 784
Cfr13I GGNCC 1 cut(s) 118
Cfr9I CCCGGG 1 cut(s) 87
CseI GACGC 1 cut(s) 788
Csp6I GTAC 2 cut(s) 95, 828
CviAII CATG 8 cut(s) 200, 307, 352, 764, 833, 870, 904, 931
CviQI GTAC 2 cut(s) 95, 828
DdeI CTNAG 8 cut(s) 15, 24, 333, 519, 695, 750, 773, 812
DpnI GATC 3 cut(s) 534, 771, 908
DpnII GATC 3 cut(s) 532, 769, 906
Eam1104I CTCTTC 3 cut(s) 99, 108, 611
EarI CTCTTC 3 cut(s) 99, 108, 611
EciI GGCGGA 1 cut(s) 715
Ecl136II GAGCTC 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 707
Eco31I GGTCTC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 705
Eco57I CTGAAG 1 cut(s) 153
Eco81I CCTNAGG 2 cut(s) 519, 695
Eco88I CYCGRG 1 cut(s) 87
EcoICRI GAGCTC 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 707
Esp3I CGTCTC 1 cut(s) 634
FaeI CATG 8 cut(s) 203, 310, 355, 767, 836, 873, 907, 934
FalI AAGNNNNNCTT 4 cut(s) 105, 137, 548, 580
FaqI GGGAC 1 cut(s) 250
FatI CATG 8 cut(s) 199, 306, 351, 763, 832, 869, 903, 930
Fnu4HI GCNGC 5 cut(s) 420, 508, 627, 759, 880
FokI GGATG 2 cut(s) 77, 524
FriOI GRGCYC 1 cut(s) 707
Fsp4HI GCNGC 5 cut(s) 420, 508, 627, 759, 880
FspBI CTAG 4 cut(s) 240, 312, 423, 600
GlaI GCGC 2 cut(s) 757, 783
GluI GCNGC 5 cut(s) 420, 508, 627, 759, 880
GsuI CTGGAG 2 cut(s) 80, 531
HaeII RGCGCY 1 cut(s) 759
HaeIII GGCC 1 cut(s) 119
HapII CCGG 1 cut(s) 88
HgaI GACGC 1 cut(s) 788
HhaI GCGC 2 cut(s) 758, 784
Hin1II CATG 8 cut(s) 203, 310, 355, 767, 836, 873, 907, 934
Hin6I GCGC 2 cut(s) 756, 782
HinP1I GCGC 2 cut(s) 756, 782
HinfI GANTC 2 cut(s) 17, 398
HpaII CCGG 1 cut(s) 88
HphI GGTGA 2 cut(s) 407, 675
Hpy166II GTNNAC 2 cut(s) 175, 830
Hpy188I TCNGA 4 cut(s) 16, 228, 252, 475
Hpy188III TCNNGA 4 cut(s) 41, 59, 312, 556
Hpy8I GTNNAC 2 cut(s) 175, 830
Hpy99I CGWCG 1 cut(s) 648
HpyAV CCTTC 4 cut(s) 203, 332, 427, 794
HpyCH4III ACNGT 3 cut(s) 150, 295, 744
HpyCH4IV ACGT 2 cut(s) 646, 935
HpyF10VI GCNNNNNNNGC 2 cut(s) 686, 879
HpyF3I CTNAG 8 cut(s) 15, 24, 333, 519, 695, 750, 773, 812
HpySE526I ACGT 2 cut(s) 646, 935
Hsp92II CATG 8 cut(s) 203, 310, 355, 767, 836, 873, 907, 934
HspAI GCGC 2 cut(s) 756, 782
Kzo9I GATC 3 cut(s) 532, 769, 906
LmnI GCTCC 2 cut(s) 128, 702
Lsp1109I GCAGC 4 cut(s) 406, 613, 745, 891
LweI GCATC 2 cut(s) 546, 667
MaeI CTAG 4 cut(s) 240, 312, 423, 600
MaeII ACGT 2 cut(s) 646, 935
MaeIII GTNAC 6 cut(s) 41, 287, 448, 652, 776, 788
MalI GATC 3 cut(s) 534, 771, 908
MboI GATC 3 cut(s) 532, 769, 906
MhlI GDGCHC 1 cut(s) 707
MluCI AATT 1 cut(s) 845
MlyI GAGTC 1 cut(s) 26
MmeI TCCRAC 1 cut(s) 106
MseI TTAA 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 1 cut(s) 88
MspR9I CCNGG 2 cut(s) 88, 89
MvnI CGCG 2 cut(s) 711, 782
MwoI GCNNNNNNNGC 2 cut(s) 686, 879
NciI CCSGG 2 cut(s) 88, 89
NdeII GATC 3 cut(s) 532, 769, 906
NlaIII CATG 8 cut(s) 203, 310, 355, 767, 836, 873, 907, 934
NmuCI GTSAC 3 cut(s) 41, 776, 788
NspI RCATGY 1 cut(s) 873
NspV TTCGAA 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 694
PfeI GAWTC 1 cut(s) 398
PkrI GCNGC 5 cut(s) 421, 509, 628, 760, 881
PleI GAGTC 1 cut(s) 25
PpsI GAGTC 1 cut(s) 25
Psp124BI GAGCTC 1 cut(s) 707
PspPI GGNCC 1 cut(s) 118
PvuII CAGCTG 1 cut(s) 419
RsaI GTAC 2 cut(s) 96, 829
RsaNI GTAC 2 cut(s) 95, 828
SacI GAGCTC 1 cut(s) 707
SaqAI TTAA 1 cut(s) 318
SatI GCNGC 5 cut(s) 420, 508, 627, 759, 880
Sau3AI GATC 3 cut(s) 532, 769, 906
Sau96I GGNCC 1 cut(s) 118
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 2 cut(s) 88, 89
SduI GDGCHC 1 cut(s) 707
SfaNI GCATC 2 cut(s) 546, 667
SfuI TTCGAA 1 cut(s) 344
SmaI CCCGGG 1 cut(s) 89
SmlI CTYRAG 3 cut(s) 6, 374, 637
SmoI CTYRAG 3 cut(s) 6, 374, 637
Sse9I AATT 1 cut(s) 845
SsiI CCGC 3 cut(s) 283, 508, 700
SspI AATATT 1 cut(s) 262
SspMI CTAG 4 cut(s) 240, 312, 423, 600
SstI GAGCTC 1 cut(s) 707
StyD4I CCNGG 2 cut(s) 86, 87
TaaI ACNGT 3 cut(s) 150, 295, 744
TaiI ACGT 2 cut(s) 649, 938
TaqI TCGA 3 cut(s) 344, 590, 798
TasI AATT 1 cut(s) 845
TatI WGTACW 1 cut(s) 827
TauI GCSGC 1 cut(s) 510
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 318
Tru9I TTAA 1 cut(s) 318
TscAI CASTG 2 cut(s) 153, 298
TseFI GTSAC 3 cut(s) 41, 776, 788
TseI GCWGC 4 cut(s) 419, 626, 758, 879
Tsp45I GTSAC 3 cut(s) 41, 776, 788
TspDTI ATGAA 2 cut(s) 368, 858
TspMI CCCGGG 1 cut(s) 87
TspRI CASTG 2 cut(s) 153, 298
XapI RAATTY 1 cut(s) 845
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 1 cut(s) 873
XmaI CCCGGG 1 cut(s) 87
XspI CTAG 4 cut(s) 240, 312, 423, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.