Rmu_sc0003185.1_g000008

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003185.1
OG0000153
Physical Location & Seq
Forward (+)
44015 .. 50292
6278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003185.1_g000008.1.cds

Sequence Viewer

Length: 2967 bp
atgaactcgccctttatagcggcgatagaggggaaggagttggagttcttacccgaaaaggatggagtagccatcccagcagcaactcgacggaacgacattcctgttttggagaagacgactccaacgtgcttcttgggctacggttttgttgatcaccatttcgtgcttgaggatggtcttaagaaggactttagaggcaattatgaaacttccagagatgtcagtcttgagcagatttcaaggctactgattgagagaggggattatccggcagttcccataaactttgagtatccctgtgggttagtgacgggatggccacaatgggttgactatgaactaggagatgaggctacgagaatcagactttcagaggctgctgttctttcttccgtattcatctctgcccgttgtgatatcaacagggatgtggagtctcttcgtcatgtagttcgaaggtggaatcctcacacgcatacttttgtttgcgaatggggagagtttacccctaccttggaggatgtcttgaatattatgaggcttcccattactggttccgtcaaccctcttggctttgattttgactcagagaagttgcaggttctcgtagaaggggcttccagtattaaaggaagtaagcgccgtttctcgaattgggtgaagcatttttggggtgttaccgaaaatggggtatttgtcccaggtaaaggctttgattctggctgccgtctggaagcgatgctatccctgtggctgacgaagtttgtctttattgagttttcttatgagtatgttgaagagcgcttatttcccttggcaatcgcaatagcagccgacagtaggtttcctttgggaccaatgttccttggtcacgtttatcgtatacttgaccatattgttgctgatgagttggagagcgttggtcggtgtggagtcactacattggtttctaccacctttctgcaggtattcatctcggaactgtttaaaggattaaagatggagcctctaaccatgagtctttctttggaattgtataataatgacaaggaaggcagcaagcaagcacagactgagtatttgccgccgggttctgaagctaagagggtgaagggagagggaaagaagtgcgataagaaaataggtgataaaggtgatgcgagggagcacgacactcagaagcctgttcggcgtttcaagcccaaggtggattttgacaagtttatgcatacgacccaacacggggtcaaactgatgatccctccaagcattccgcttcaaaagaacaaggaagtcaagaagaaaagatcttcaacaccccgagcaggtggtacttcccttacaaagcaagtaaatgctaccaatttcgaagtgaagaaaagggtgaaaagggaggctggtgcagattttgatgtccctctccgtcgaagcaaccgtgtgaaatccaagagttctcctctacctcgtggtcctccagcttatcttgagttatctgattctgatcatggagagggttctcaagggggtccagctgatccttctaaagaagatcatactactccttcaaaaggggcttctgatcatctgtctgaagtgttatggaagatgaaggcatattctaaagaagatcatactactccttcaaaaggggcttctgatcatctgtctgatgtgtttcccatggttagccaagatagtgacaaccaggttatggaagatgaaggcatgagtgatggtgataagatcgtcacagatgatggcacaagcgatggtgacaaggtgggcgaagatgaaggcatgagtaatggtgataagatcgtcacagatgatggcacgagcgatggtgacaaggtgggcgaagatgaaggcatgagtgatggtgataagatcgtcacagatgatggcacgagcgatggtgacaaggtgggcgaagatgaaggcatgaatgatggtgataaggtgggcgaagatgaaagcatgagtgataagcaagccttgaaaaacgacagtgtgagcaatgataatcaggccttgaaaaacgacagtgtgagcaatgataatcaggttgatgcaggatttgagcctttgcaacatattccgggtgagagtgaggataatgatcagcatgatactgaagtgtttatgcttttcccagtcgctgtagttagtgatgatactgttttgatactgctgctgttacatgagttttgcccctttgatgatgtgaagtgtgaaaggcgtgagcaggggcatccttcagaagttgataagagtactgatggggttggtcatgacacggcggtacacgccttagttgagtctgataagcacattccatggattgataaggtgactgtcatccaaactcaaagccttggcctaagcttgcctgccaaagggtcaactagtgaatgggcgacccatatggacaacttcatggttcgatttgcttctaaagaggagtccgctttaagcatggctgatgttacaccagtgttgagcggagacatcgctgttttcgctggtatgaaaattccttcagagttggtgggtcccttgactagatttgctgagagatatagcggtggagatatctttagtttgattgatcgagattatacttcaaggaagaagtgtgagttgattaaggaacttggcatgatgttgttcagcatggaagtttgccagataaaatatggagaagtattcctcatttggagagacacctgtcgtgatttcatgggggcaggtcttaacattggcttcctgttggattccttaaaacaaggtgcaaagcatttctttggttatatgatgaggtctgaaggatcagagaaccagtatgttaaagttcaaggcctgcaggagatggctagcgttgacccctccttccttttcttttcttttaggctcatgctagcccccttgtatagattcgcgaagccttcaattagagtatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

988

Amino Acids

109.84

Weight (kDa)

5.0

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1319
Acc36I ACCTGC 4 cut(s) 592, 958, 1319, 2741
AccB7I CCANNNNNTGG 1 cut(s) 1714
AccBSI CCGCTC 1 cut(s) 2505
AccI GTMKAC 1 cut(s) 886
AccII CGCG 1 cut(s) 2942
AciI CCGC 7 cut(s) 20, 1088, 1277, 2303, 2469, 2505, 2586
AclWI GGATC 3 cut(s) 1255, 1532, 2839
AcoI YGGCCR 1 cut(s) 320
AcsI RAATTY 1 cut(s) 2535
AcuI CTGAAG 6 cut(s) 1119, 1614, 2157, 2244, 2526, 2847
AfaI GTAC 3 cut(s) 1336, 2278, 2307
AfeI AGCGCT 1 cut(s) 806
AflII CTTAAG 1 cut(s) 182
AhlI ACTAGT 1 cut(s) 2408
AjnI CCWGG 2 cut(s) 703, 1707
AloI GAACNNNNNNTCC 2 cut(s) 29, 61
AluBI AGCT 4 cut(s) 1103, 1481, 1535, 2388
AluI AGCT 4 cut(s) 1103, 1481, 1535, 2388
Alw21I GWGCWC 1 cut(s) 1173
Alw26I GTCTC 3 cut(s) 444, 2502, 2718
AlwI GGATC 3 cut(s) 1255, 1532, 2839
AlwNI CAGNNNCTG 2 cut(s) 380, 2162
Ama87I CYCGRG 1 cut(s) 1323
Aor51HI AGCGCT 1 cut(s) 806
AoxI GGCC 4 cut(s) 320, 2031, 2380, 2860
ApeKI GCWGC 6 cut(s) 80, 380, 726, 833, 1059, 2194
ApoI RAATTY 1 cut(s) 2535
ArsI GACNNNNNNTTYG 2 cut(s) 1066, 1098
AspLEI GCGC 2 cut(s) 645, 807
AspS9I GGNCC 4 cut(s) 857, 1472, 1529, 2555
AsuC2I CCSGG 2 cut(s) 1092, 2103
AsuII TTCGAA 2 cut(s) 457, 1371
AsuNHI GCTAGC 2 cut(s) 2876, 2920
AvaI CYCGRG 1 cut(s) 1323
AvaII GGWCC 4 cut(s) 857, 1472, 1529, 2555
BaeI ACNNNNGTAYC 2 cut(s) 2124, 2157
BalI TGGCCA 1 cut(s) 322
BauI CACGAG 3 cut(s) 1467, 1837, 1909
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 1173
BbvI GCAGC 6 cut(s) 92, 367, 713, 845, 1071, 2181
BceAI ACGGC 3 cut(s) 630, 714, 2316
BciT130I CCWGG 2 cut(s) 705, 1709
BciVI GTATCC 1 cut(s) 306
BclI TGATCA 5 cut(s) 154, 1504, 1582, 1660, 2122
BcnI CCSGG 2 cut(s) 1092, 2103
BcoDI GTCTC 3 cut(s) 444, 2502, 2718
BcuI ACTAGT 1 cut(s) 2408
BfaI CTAG 5 cut(s) 344, 2409, 2565, 2877, 2921
BfmI CTRYAG 3 cut(s) 965, 2163, 2864
BfoI RGCGCY 2 cut(s) 646, 808
BfrI CTTAAG 1 cut(s) 182
BfuAI ACCTGC 4 cut(s) 592, 958, 1319, 2741
BfuI GTATCC 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 1192
BglII AGATCT 1 cut(s) 1310
BisI GCNGC 8 cut(s) 21, 81, 381, 727, 834, 1060, 1088, 2195
BlsI GCNGC 8 cut(s) 22, 82, 382, 728, 835, 1061, 1089, 2196
BmcAI AGTACT 1 cut(s) 2278
Bme1390I CCNGG 4 cut(s) 705, 1092, 1709, 2103
Bme18I GGWCC 4 cut(s) 857, 1472, 1529, 2555
BmeT110I CYCGRG 1 cut(s) 1323
BmgT120I GGNCC 4 cut(s) 857, 1472, 1529, 2555
BmiI GGNNCC 6 cut(s) 559, 858, 1008, 1530, 2556, 2557
BmrFI CCNGG 4 cut(s) 705, 1092, 1709, 2103
BmrI ACTGGG 1 cut(s) 2150
BmsI GCATC 4 cut(s) 732, 1150, 2062, 2263
BmtI GCTAGC 2 cut(s) 2880, 2924
BmuI ACTGGG 1 cut(s) 2150
BoxI GACNNNNGTC 1 cut(s) 2730
BpiI GAAGAC 1 cut(s) 122
BplI GAGNNNNNCTC 2 cut(s) 1444, 1476
BpmI CTGGAG 1 cut(s) 1461
Bpu10I CCTNAGC 1 cut(s) 2384
Bpu14I TTCGAA 2 cut(s) 457, 1371
BpuEI CTTGAG 4 cut(s) 191, 251, 1506, 1508
BpuMI CCSGG 2 cut(s) 1092, 2103
BsaBI GATNNNNATC 2 cut(s) 1503, 2121
BsaJI CCNNGG 8 cut(s) 516, 703, 816, 868, 1206, 1683, 2339, 2377
BsaXI ACNNNNNCTCC 2 cut(s) 29, 59
Bse1I ACTGG 5 cut(s) 559, 624, 2156, 2495, 2842
Bse3DI GCAATG 2 cut(s) 2026, 2062
Bse8I GATNNNNATC 2 cut(s) 1503, 2121
BseBI CCWGG 2 cut(s) 705, 1709
BseDI CCNNGG 8 cut(s) 516, 703, 816, 868, 1206, 1683, 2339, 2377
BseGI GGATG 8 cut(s) 67, 72, 181, 323, 436, 529, 2254, 2361
BseJI GATNNNNATC 2 cut(s) 1503, 2121
BseMI GCAATG 2 cut(s) 2026, 2062
BseMII CTCAG 4 cut(s) 603, 1068, 1193, 2565
BseNI ACTGG 5 cut(s) 559, 624, 2156, 2495, 2842
BseRI GAGGAG 2 cut(s) 1449, 2477
BseXI GCAGC 6 cut(s) 92, 367, 713, 845, 1071, 2181
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 1425
Bsh1236I CGCG 1 cut(s) 2942
BshFI GGCC 4 cut(s) 322, 2033, 2382, 2862
BsiHKAI GWGCWC 1 cut(s) 1173
BsiHKCI CYCGRG 1 cut(s) 1323
BsiSI CCGG 3 cut(s) 272, 1091, 2102
BslFI GGGAC 4 cut(s) 686, 870, 1403, 2541
BsmAI GTCTC 3 cut(s) 444, 2502, 2718
BsmFI GGGAC 4 cut(s) 686, 870, 1403, 2541
BsmI GAATGC 1 cut(s) 1272
BsnI GGCC 4 cut(s) 322, 2033, 2382, 2862
BsoBI CYCGRG 1 cut(s) 1323
Bsp119I TTCGAA 2 cut(s) 457, 1371
Bsp1286I GDGCHC 1 cut(s) 1173
Bsp19I CCATGG 2 cut(s) 1683, 2339
Bsp68I TCGCGA 1 cut(s) 2942
BspACI CCGC 7 cut(s) 20, 1088, 1277, 2303, 2469, 2505, 2586
BspANI GGCC 4 cut(s) 322, 2033, 2382, 2862
BspCNI CTCAG 4 cut(s) 602, 1069, 1192, 2566
BspFNI CGCG 1 cut(s) 2942
BspHI TCATGA 1 cut(s) 2293
BspLI GGNNCC 6 cut(s) 559, 858, 1008, 1530, 2556, 2557
BspMAI CTGCAG 2 cut(s) 969, 2868
BspMI ACCTGC 4 cut(s) 592, 958, 1319, 2741
BspOI GCTAGC 2 cut(s) 2880, 2924
BspPI GGATC 3 cut(s) 1255, 1532, 2839
BspQI GCTCTTC 1 cut(s) 795
BspT104I TTCGAA 2 cut(s) 457, 1371
BspTI CTTAAG 1 cut(s) 182
BsrBI CCGCTC 1 cut(s) 2505
BsrDI GCAATG 2 cut(s) 2026, 2062
BsrI ACTGG 5 cut(s) 559, 624, 2156, 2495, 2842
BssECI CCNNGG 8 cut(s) 516, 703, 816, 868, 1206, 1683, 2339, 2377
BssNAI GTATAC 1 cut(s) 887
BssSI CACGAG 3 cut(s) 1467, 1837, 1909
BssT1I CCWWGG 7 cut(s) 516, 816, 868, 1206, 1683, 2339, 2377
Bst1107I GTATAC 1 cut(s) 887
Bst2BI CACGAG 3 cut(s) 1467, 1837, 1909
Bst2UI CCWGG 2 cut(s) 705, 1709
Bst4CI ACNGT 8 cut(s) 146, 842, 987, 1439, 2012, 2048, 2182, 2359
Bst6I CTCTTC 2 cut(s) 447, 795
BstAFI CTTAAG 1 cut(s) 182
BstBI TTCGAA 2 cut(s) 457, 1371
BstC8I GCNNGC 8 cut(s) 1064, 1068, 1995, 2390, 2394, 2864, 2878, 2922
BstDEI CTNAG 8 cut(s) 589, 1077, 1104, 1179, 2314, 2384, 2574, 2964
BstDSI CCRYGG 2 cut(s) 1683, 2339
BstENI CCTNNNNNAGG 3 cut(s) 1569, 1647, 2397
BstF5I GGATG 8 cut(s) 67, 72, 181, 323, 436, 529, 2254, 2361
BstFNI CGCG 1 cut(s) 2942
BstH2I RGCGCY 2 cut(s) 646, 808
BstHHI GCGC 2 cut(s) 645, 807
BstMAI GTCTC 3 cut(s) 444, 2502, 2718
BstMWI GCNNNNNNNGC 7 cut(s) 77, 138, 833, 1192, 1201, 2309, 2522
BstNI CCWGG 2 cut(s) 705, 1709
BstPAI GACNNNNGTC 1 cut(s) 2730
BstSCI CCNGG 4 cut(s) 703, 1090, 1707, 2101
BstSFI CTRYAG 3 cut(s) 965, 2163, 2864
BstUI CGCG 1 cut(s) 2942
BstV1I GCAGC 6 cut(s) 92, 367, 713, 845, 1071, 2181
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 1310
BstYI RGATCY 1 cut(s) 1310
BstZ17I GTATAC 1 cut(s) 887
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 4 cut(s) 322, 2033, 2382, 2862
BtgI CCRYGG 2 cut(s) 1683, 2339
BtgZI GCGATG 5 cut(s) 755, 1785, 1857, 1929, 2497
BtsCI GGATG 8 cut(s) 67, 72, 181, 323, 436, 529, 2254, 2361
BtsIMutI CAGTG 3 cut(s) 2017, 2053, 2502
BtuMI TCGCGA 1 cut(s) 2942
BveI ACCTGC 4 cut(s) 592, 958, 1319, 2741
Cac8I GCNNGC 8 cut(s) 1064, 1068, 1995, 2390, 2394, 2864, 2878, 2922
CaiI CAGNNNCTG 2 cut(s) 380, 2162
CciI TCATGA 1 cut(s) 2293
CfoI GCGC 2 cut(s) 645, 807
Cfr13I GGNCC 4 cut(s) 857, 1472, 1529, 2555
CsiI ACCWGGT 1 cut(s) 1707
Csp6I GTAC 3 cut(s) 1335, 2277, 2306
CviQI GTAC 3 cut(s) 1335, 2277, 2306
DdeI CTNAG 8 cut(s) 589, 1077, 1104, 1179, 2314, 2384, 2574, 2964
DraI TTTAAA 1 cut(s) 991
EaeI YGGCCR 1 cut(s) 320
Eam1104I CTCTTC 2 cut(s) 447, 795
EarI CTCTTC 2 cut(s) 447, 795
Eco130I CCWWGG 7 cut(s) 516, 816, 868, 1206, 1683, 2339, 2377
Eco147I AGGCCT 2 cut(s) 2033, 2862
Eco32I GATATC 2 cut(s) 421, 2596
Eco47I GGWCC 4 cut(s) 857, 1472, 1529, 2555
Eco47III AGCGCT 1 cut(s) 806
Eco57I CTGAAG 6 cut(s) 1119, 1614, 2157, 2244, 2526, 2847
Eco88I CYCGRG 1 cut(s) 1323
EcoNI CCTNNNNNAGG 3 cut(s) 1569, 1647, 2397
EcoO109I RGGNCCY 1 cut(s) 2555
EcoRII CCWGG 2 cut(s) 703, 1707
EcoRV GATATC 2 cut(s) 421, 2596
EcoT14I CCWWGG 7 cut(s) 516, 816, 868, 1206, 1683, 2339, 2377
EcoT22I ATGCAT 1 cut(s) 1233
ErhI CCWWGG 7 cut(s) 516, 816, 868, 1206, 1683, 2339, 2377
FalI AAGNNNNNCTT 8 cut(s) 176, 208, 755, 787, 1982, 2014, 2789, 2821
FaqI GGGAC 4 cut(s) 686, 870, 1403, 2541
FauNDI CATATG 1 cut(s) 2427
FbaI TGATCA 5 cut(s) 154, 1504, 1582, 1660, 2122
FblI GTMKAC 1 cut(s) 886
Fnu4HI GCNGC 8 cut(s) 21, 81, 381, 727, 834, 1060, 1088, 2195
FokI GGATG 8 cut(s) 59, 74, 188, 330, 443, 536, 2241, 2348
Fsp4HI GCNGC 8 cut(s) 21, 81, 381, 727, 834, 1060, 1088, 2195
FspBI CTAG 5 cut(s) 344, 2409, 2565, 2877, 2921
GlaI GCGC 2 cut(s) 644, 806
GluI GCNGC 8 cut(s) 21, 81, 381, 727, 834, 1060, 1088, 2195
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 1461
HaeII RGCGCY 2 cut(s) 646, 808
HaeIII GGCC 4 cut(s) 322, 2033, 2382, 2862
HapII CCGG 3 cut(s) 272, 1091, 2102
HhaI GCGC 2 cut(s) 645, 807
Hin6I GCGC 2 cut(s) 643, 805
HinP1I GCGC 2 cut(s) 643, 805
HincII GTYRAC 4 cut(s) 334, 565, 2406, 2884
HindII GTYRAC 4 cut(s) 334, 565, 2406, 2884
HindIII AAGCTT 1 cut(s) 2386
HpaII CCGG 3 cut(s) 272, 1091, 2102
Hpy166II GTNNAC 7 cut(s) 334, 507, 565, 887, 2308, 2406, 2884
Hpy8I GTNNAC 7 cut(s) 334, 507, 565, 887, 2308, 2406, 2884
Hpy99I CGWCG 2 cut(s) 93, 1431
HpyCH4III ACNGT 8 cut(s) 146, 842, 987, 1439, 2012, 2048, 2182, 2359
HpyCH4IV ACGT 2 cut(s) 128, 876
HpyCH4V TGCA 8 cut(s) 601, 967, 1231, 1406, 2075, 2092, 2795, 2866
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 138, 833, 1192, 1201, 2309, 2522
HpyF3I CTNAG 8 cut(s) 589, 1077, 1104, 1179, 2314, 2384, 2574, 2964
HpySE526I ACGT 2 cut(s) 128, 876
HspAI GCGC 2 cut(s) 643, 805
KflI GGGWCCC 1 cut(s) 2555
Ksp22I TGATCA 5 cut(s) 154, 1504, 1582, 1660, 2122
LguI GCTCTTC 1 cut(s) 795
LmnI GCTCC 2 cut(s) 1006, 1168
Lsp1109I GCAGC 6 cut(s) 92, 367, 713, 845, 1071, 2181
LweI GCATC 4 cut(s) 732, 1150, 2062, 2263
MabI ACCWGGT 1 cut(s) 1707
MaeI CTAG 5 cut(s) 344, 2409, 2565, 2877, 2921
MaeII ACGT 2 cut(s) 128, 876
MbiI CCGCTC 1 cut(s) 2505
MflI RGATCY 1 cut(s) 1310
MhlI GDGCHC 1 cut(s) 1173
MlsI TGGCCA 1 cut(s) 322
MluCI AATT 6 cut(s) 202, 655, 1034, 1366, 2535, 2952
MluNI TGGCCA 1 cut(s) 322
MlyI GAGTC 7 cut(s) 115, 446, 581, 945, 1030, 2330, 2474
MmeI TCCRAC 4 cut(s) 21, 149, 894, 2754
Mox20I TGGCCA 1 cut(s) 322
Mph1103I ATGCAT 1 cut(s) 1233
MscI TGGCCA 1 cut(s) 322
MseI TTAA 9 cut(s) 183, 630, 990, 998, 2474, 2649, 2757, 2783, 2850
Msp20I TGGCCA 1 cut(s) 322
MspA1I CMGCKG 1 cut(s) 1535
MspCI CTTAAG 1 cut(s) 182
MspI CCGG 3 cut(s) 272, 1091, 2102
MspR9I CCNGG 4 cut(s) 705, 1092, 1709, 2103
Mva1269I GAATGC 1 cut(s) 1272
MvaI CCWGG 2 cut(s) 705, 1709
MvnI CGCG 1 cut(s) 2942
MwoI GCNNNNNNNGC 7 cut(s) 77, 138, 833, 1192, 1201, 2309, 2522
NciI CCSGG 2 cut(s) 1092, 2103
NcoI CCATGG 2 cut(s) 1683, 2339
NdeI CATATG 1 cut(s) 2427
NheI GCTAGC 2 cut(s) 2876, 2920
NlaIV GGNNCC 6 cut(s) 559, 858, 1008, 1530, 2556, 2557
NruI TCGCGA 1 cut(s) 2942
NsiI ATGCAT 1 cut(s) 1233
NspV TTCGAA 2 cut(s) 457, 1371
PagI TCATGA 1 cut(s) 2293
PaqCI CACCTGC 1 cut(s) 1319
PceI AGGCCT 2 cut(s) 2033, 2862
PciSI GCTCTTC 1 cut(s) 795
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 1435
PctI GAATGC 1 cut(s) 1272
PfeI GAWTC 6 cut(s) 363, 466, 719, 1499, 2777, 2937
PflMI CCANNNNNTGG 1 cut(s) 1714
PkrI GCNGC 8 cut(s) 22, 82, 382, 728, 835, 1061, 1089, 2196
PleI GAGTC 7 cut(s) 115, 445, 581, 944, 1029, 2329, 2473
PpsI GAGTC 7 cut(s) 115, 445, 581, 944, 1029, 2329, 2473
PpuMI RGGWCCY 1 cut(s) 2555
PshAI GACNNNNGTC 1 cut(s) 2730
Psp5II RGGWCCY 1 cut(s) 2555
Psp6I CCWGG 2 cut(s) 703, 1707
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 2 cut(s) 703, 1707
PspN4I GGNNCC 6 cut(s) 559, 858, 1008, 1530, 2556, 2557
PspPI GGNCC 4 cut(s) 857, 1472, 1529, 2555
PspPPI RGGWCCY 1 cut(s) 2555
PstI CTGCAG 2 cut(s) 969, 2868
PstNI CAGNNNCTG 2 cut(s) 380, 2162
PsuI RGATCY 1 cut(s) 1310
PvuII CAGCTG 1 cut(s) 1535
RruI TCGCGA 1 cut(s) 2942
RsaI GTAC 3 cut(s) 1336, 2278, 2307
RsaNI GTAC 3 cut(s) 1335, 2277, 2306
SapI GCTCTTC 1 cut(s) 795
SaqAI TTAA 9 cut(s) 183, 630, 990, 998, 2474, 2649, 2757, 2783, 2850
SatI GCNGC 8 cut(s) 21, 81, 381, 727, 834, 1060, 1088, 2195
Sau96I GGNCC 4 cut(s) 857, 1472, 1529, 2555
SbfI CCTGCAGG 1 cut(s) 2868
ScaI AGTACT 1 cut(s) 2278
SchI GAGTC 7 cut(s) 115, 446, 581, 945, 1030, 2330, 2474
ScrFI CCNGG 4 cut(s) 705, 1092, 1709, 2103
SdaI CCTGCAGG 1 cut(s) 2868
SduI GDGCHC 1 cut(s) 1173
SexAI ACCWGGT 1 cut(s) 1707
SfaNI GCATC 4 cut(s) 732, 1150, 2062, 2263
SfcI CTRYAG 3 cut(s) 965, 2163, 2864
SfuI TTCGAA 2 cut(s) 457, 1371
SinI GGWCC 4 cut(s) 857, 1472, 1529, 2555
SmlI CTYRAG 5 cut(s) 170, 182, 230, 1487, 1521
SmoI CTYRAG 5 cut(s) 170, 182, 230, 1487, 1521
SpeI ACTAGT 1 cut(s) 2408
Sse8387I CCTGCAGG 1 cut(s) 2868
Sse9I AATT 6 cut(s) 202, 655, 1034, 1366, 2535, 2952
SseBI AGGCCT 2 cut(s) 2033, 2862
SsiI CCGC 7 cut(s) 20, 1088, 1277, 2303, 2469, 2505, 2586
SspI AATATT 1 cut(s) 535
SspMI CTAG 5 cut(s) 344, 2409, 2565, 2877, 2921
StuI AGGCCT 2 cut(s) 2033, 2862
StyD4I CCNGG 4 cut(s) 703, 1090, 1707, 2101
StyI CCWWGG 7 cut(s) 516, 816, 868, 1206, 1683, 2339, 2377
TaaI ACNGT 8 cut(s) 146, 842, 987, 1439, 2012, 2048, 2182, 2359
TaiI ACGT 2 cut(s) 131, 879
TaqI TCGA 7 cut(s) 88, 457, 653, 1371, 1429, 2446, 2614
TasI AATT 6 cut(s) 202, 655, 1034, 1366, 2535, 2952
TatI WGTACW 1 cut(s) 2276
TauI GCSGC 2 cut(s) 23, 1090
TfiI GAWTC 6 cut(s) 363, 466, 719, 1499, 2777, 2937
Tru1I TTAA 9 cut(s) 183, 630, 990, 998, 2474, 2649, 2757, 2783, 2850
Tru9I TTAA 9 cut(s) 183, 630, 990, 998, 2474, 2649, 2757, 2783, 2850
TscAI CASTG 3 cut(s) 2017, 2053, 2502
TseI GCWGC 6 cut(s) 80, 380, 726, 833, 1059, 2194
TspGWI ACGGA 4 cut(s) 106, 385, 550, 1415
TspRI CASTG 3 cut(s) 2017, 2053, 2502
Van91I CCANNNNNTGG 1 cut(s) 1714
Vha464I CTTAAG 1 cut(s) 182
VpaK11BI GGWCC 4 cut(s) 857, 1472, 1529, 2555
XagI CCTNNNNNAGG 3 cut(s) 1569, 1647, 2397
XapI RAATTY 1 cut(s) 2535
XcmI CCANNNNNNNNNTGG 1 cut(s) 2696
XmiI GTMKAC 1 cut(s) 886
XspI CTAG 5 cut(s) 344, 2409, 2565, 2877, 2921
ZrmI AGTACT 1 cut(s) 2278
Zsp2I ATGCAT 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.