Rmu_sc0007228.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007228.1
OG0000153
Physical Location & Seq
Forward (+)
1274 .. 2639
1366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007228.1_g000001.1.cds

Sequence Viewer

Length: 867 bp
atgaaagctgaaacaataagtgaaaaaaattgtaccttgatttggcgagagaaaaaaacccagatagcaaatgagcaagacaaggccgaagttctcaactttctccaaatgggtttcagaaacttcaagacccggattccggtggcccgaatctccgagagcggtgatcgatcacttcaatgttctttaatttggacctcaatcgatccacggcatctcgatgacaagagcagaaaacatggtggtggtgagaagtggccggcgactcggcggagagcgaatccactgaacaacgactcggcgtgtgatcaccatttcgtgcttgaggatggtcttaagaaggactttagaggcaattatgaaacttccagagatgtcaatcttgagcagatttcaaggcttctgattgagagaggggattatccggcagttcccataaattttgagtatccctgtggtttggttacgggatggccacaatgggttgactatgaactaggagatgaggctgcgagaactagactttcagaagctgctgttctttcttccgtattcatctctgcccgttgtgatatcaacagggatgtagagtctctccgtcatgtagttcgaaggtggaatcctcatacgcatacctttgtttgcgagtggggagagtttacccctaccttggaggatgtcttgaacattatgaggcttcccattactggttccgtcaaccctcttggctttgattttgactcagagaagttgcaggttcttgtagaaggggcttccagtattaaaggaagtaagcgccgtttctcgaattgggtaaaggctttgattctggctgccgtctggaagcgatgctatccctgtggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

288

Amino Acids

33.01

Weight (kDa)

8.09

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 745
AccBSI CCGCTC 1 cut(s) 162
AciI CCGC 2 cut(s) 162, 271
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 2 cut(s) 257, 473
AcsI RAATTY 1 cut(s) 439
AfaI GTAC 1 cut(s) 34
AfiI CCNNNNNNNGG 4 cut(s) 42, 139, 670, 707
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 4 cut(s) 127, 179, 396, 685
AluBI AGCT 2 cut(s) 8, 533
AluI AGCT 2 cut(s) 8, 533
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 4 cut(s) 84, 144, 257, 473
ApeKI GCWGC 3 cut(s) 509, 533, 833
ApoI RAATTY 1 cut(s) 439
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 2 cut(s) 145, 195
AsuC2I CCSGG 1 cut(s) 133
AsuHPI GGTGA 3 cut(s) 176, 260, 302
AsuII TTCGAA 1 cut(s) 610
AvaII GGWCC 1 cut(s) 195
BalI TGGCCA 1 cut(s) 475
BbvI GCAGC 3 cut(s) 496, 520, 820
BccI CCATC 2 cut(s) 323, 465
BceAI ACGGC 3 cut(s) 227, 783, 821
BciVI GTATCC 1 cut(s) 459
BclI TGATCA 1 cut(s) 307
BcnI CCSGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 2 cut(s) 497, 519
BfoI RGCGCY 1 cut(s) 799
BfrI CTTAAG 1 cut(s) 335
BfuAI ACCTGC 1 cut(s) 745
BfuI GTATCC 1 cut(s) 459
BisI GCNGC 3 cut(s) 510, 534, 834
BlsI GCNGC 3 cut(s) 511, 535, 835
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 2 cut(s) 145, 195
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 2 cut(s) 223, 839
Bpu14I TTCGAA 1 cut(s) 610
BpuEI CTTGAG 2 cut(s) 344, 404
BpuMI CCSGG 1 cut(s) 133
Bsa29I ATCGAT 2 cut(s) 169, 204
BsaBI GATNNNNATC 1 cut(s) 378
BsaJI CCNNGG 2 cut(s) 209, 669
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 4 cut(s) 42, 139, 670, 707
Bse118I RCCGGY 1 cut(s) 259
Bse1I ACTGG 2 cut(s) 712, 777
Bse8I GATNNNNATC 1 cut(s) 378
BseCI ATCGAT 2 cut(s) 169, 204
BseDI CCNNGG 2 cut(s) 209, 669
BseGI GGATG 4 cut(s) 334, 476, 589, 682
BseJI GATNNNNATC 1 cut(s) 378
BseLI CCNNNNNNNGG 4 cut(s) 42, 139, 670, 707
BseMII CTCAG 1 cut(s) 756
BseNI ACTGG 2 cut(s) 712, 777
BseXI GCAGC 3 cut(s) 496, 520, 820
BshFI GGCC 4 cut(s) 86, 146, 259, 475
BshVI ATCGAT 2 cut(s) 169, 204
BsiSI CCGG 4 cut(s) 133, 140, 260, 425
BslI CCNNNNNNNGG 4 cut(s) 42, 139, 670, 707
BsmAI GTCTC 1 cut(s) 597
BsnI GGCC 4 cut(s) 86, 146, 259, 475
Bsp119I TTCGAA 1 cut(s) 610
Bsp143I GATC 4 cut(s) 166, 170, 205, 307
BspACI CCGC 2 cut(s) 162, 271
BspANI GGCC 4 cut(s) 86, 146, 259, 475
BspCNI CTCAG 1 cut(s) 755
BspDI ATCGAT 2 cut(s) 169, 204
BspLI GGNNCC 1 cut(s) 712
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 610
BspTI CTTAAG 1 cut(s) 335
BsrBI CCGCTC 1 cut(s) 162
BsrFI RCCGGY 1 cut(s) 259
BsrI ACTGG 2 cut(s) 712, 777
BssAI RCCGGY 1 cut(s) 259
BssECI CCNNGG 2 cut(s) 209, 669
BssMI GATC 4 cut(s) 166, 170, 205, 307
BssT1I CCWWGG 1 cut(s) 669
BstAFI CTTAAG 1 cut(s) 335
BstBI TTCGAA 1 cut(s) 610
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 742
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 4 cut(s) 334, 476, 589, 682
BstH2I RGCGCY 1 cut(s) 799
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 4 cut(s) 169, 173, 208, 310
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 4 cut(s) 166, 170, 205, 307
BstSCI CCNGG 1 cut(s) 131
BstV1I GCAGC 3 cut(s) 496, 520, 820
Bsu15I ATCGAT 2 cut(s) 169, 204
BsuI GTATCC 1 cut(s) 459
BsuRI GGCC 4 cut(s) 86, 146, 259, 475
BsuTUI ATCGAT 2 cut(s) 169, 204
BtgI CCRYGG 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 862
BtsCI GGATG 4 cut(s) 334, 476, 589, 682
BtsIMutI CAGTG 1 cut(s) 284
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 1 cut(s) 798
Cfr10I RCCGGY 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 145, 195
ClaI ATCGAT 2 cut(s) 169, 204
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 239, 602
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 742
DpnI GATC 4 cut(s) 168, 172, 207, 309
DpnII GATC 4 cut(s) 166, 170, 205, 307
EaeI YGGCCR 2 cut(s) 257, 473
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 669
Eco32I GATATC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 195
EcoRV GATATC 1 cut(s) 574
EcoT14I CCWWGG 1 cut(s) 669
ErhI CCWWGG 1 cut(s) 669
FaeI CATG 2 cut(s) 242, 605
FaiI YATR 8 cut(s) 240, 360, 437, 492, 603, 627, 633, 692
FalI AAGNNNNNCTT 2 cut(s) 329, 361
FatI CATG 2 cut(s) 238, 601
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 3 cut(s) 510, 534, 834
FokI GGATG 4 cut(s) 341, 483, 596, 689
Fsp4HI GCNGC 3 cut(s) 510, 534, 834
FspBI CTAG 2 cut(s) 497, 519
GlaI GCGC 1 cut(s) 797
GluI GCNGC 3 cut(s) 510, 534, 834
HaeII RGCGCY 1 cut(s) 799
HaeIII GGCC 4 cut(s) 86, 146, 259, 475
HapII CCGG 4 cut(s) 133, 140, 260, 425
HhaI GCGC 1 cut(s) 798
Hin1II CATG 2 cut(s) 242, 605
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HincII GTYRAC 2 cut(s) 487, 718
HindII GTYRAC 2 cut(s) 487, 718
HinfI GANTC 9 cut(s) 136, 150, 265, 280, 296, 590, 619, 740, 826
HpaII CCGG 4 cut(s) 133, 140, 260, 425
HphI GGTGA 3 cut(s) 176, 260, 302
Hpy166II GTNNAC 3 cut(s) 487, 660, 718
Hpy188I TCNGA 5 cut(s) 119, 157, 405, 529, 745
Hpy188III TCNNGA 7 cut(s) 127, 218, 369, 383, 682, 805, 841
Hpy8I GTNNAC 3 cut(s) 487, 660, 718
HpyAV CCTTC 3 cut(s) 334, 606, 761
HpyCH4V TGCA 1 cut(s) 754
HpyF3I CTNAG 1 cut(s) 742
Hsp92II CATG 2 cut(s) 242, 605
HspAI GCGC 1 cut(s) 796
KroI GCCGGC 1 cut(s) 259
KroNI GCCGGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 4 cut(s) 166, 170, 205, 307
Lsp1109I GCAGC 3 cut(s) 496, 520, 820
LweI GCATC 2 cut(s) 223, 839
MaeI CTAG 2 cut(s) 497, 519
MaeIII GTNAC 1 cut(s) 463
MalI GATC 4 cut(s) 168, 172, 207, 309
MbiI CCGCTC 1 cut(s) 162
MboI GATC 4 cut(s) 166, 170, 205, 307
MboII GAAGA 1 cut(s) 537
MlsI TGGCCA 1 cut(s) 475
MluCI AATT 5 cut(s) 28, 189, 355, 439, 808
MluNI TGGCCA 1 cut(s) 475
MlyI GAGTC 4 cut(s) 259, 290, 599, 734
MnlI CCTC 9 cut(s) 208, 319, 344, 407, 499, 633, 667, 687, 732
Mox20I TGGCCA 1 cut(s) 475
MroNI GCCGGC 1 cut(s) 259
MscI TGGCCA 1 cut(s) 475
MseI TTAA 3 cut(s) 188, 336, 783
MslI CAYNNNNRTG 3 cut(s) 178, 219, 243
Msp20I TGGCCA 1 cut(s) 475
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 4 cut(s) 133, 140, 260, 425
MspR9I CCNGG 1 cut(s) 133
NaeI GCCGGC 1 cut(s) 261
NciI CCSGG 1 cut(s) 133
NdeII GATC 4 cut(s) 166, 170, 205, 307
NgoMIV GCCGGC 1 cut(s) 259
NlaIII CATG 2 cut(s) 242, 605
NlaIV GGNNCC 1 cut(s) 712
NmeAIII GCCGAG 2 cut(s) 247, 278
NspV TTCGAA 1 cut(s) 610
PdiI GCCGGC 1 cut(s) 261
PfeI GAWTC 5 cut(s) 136, 150, 280, 619, 826
PkrI GCNGC 3 cut(s) 511, 535, 835
PleI GAGTC 4 cut(s) 259, 290, 598, 734
PpsI GAGTC 4 cut(s) 259, 290, 598, 734
PspN4I GGNNCC 1 cut(s) 712
PspPI GGNCC 2 cut(s) 145, 195
PstNI CAGNNNCTG 1 cut(s) 533
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
RseI CAYNNNNRTG 3 cut(s) 178, 219, 243
SaqAI TTAA 3 cut(s) 188, 336, 783
SatI GCNGC 3 cut(s) 510, 534, 834
Sau3AI GATC 4 cut(s) 166, 170, 205, 307
Sau96I GGNCC 2 cut(s) 145, 195
SchI GAGTC 4 cut(s) 259, 290, 599, 734
ScrFI CCNGG 1 cut(s) 133
SetI ASST 8 cut(s) 10, 38, 200, 535, 617, 638, 671, 759
SfaNI GCATC 2 cut(s) 223, 839
SfuI TTCGAA 1 cut(s) 610
SinI GGWCC 1 cut(s) 195
SmiMI CAYNNNNRTG 3 cut(s) 178, 219, 243
SmlI CTYRAG 3 cut(s) 323, 335, 383
SmoI CTYRAG 3 cut(s) 323, 335, 383
Sse9I AATT 5 cut(s) 28, 189, 355, 439, 808
SsiI CCGC 2 cut(s) 162, 271
SspMI CTAG 2 cut(s) 497, 519
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 669
TaqI TCGA 5 cut(s) 169, 204, 219, 610, 806
TasI AATT 5 cut(s) 28, 189, 355, 439, 808
TfiI GAWTC 5 cut(s) 136, 150, 280, 619, 826
Tru1I TTAA 3 cut(s) 188, 336, 783
Tru9I TTAA 3 cut(s) 188, 336, 783
TscAI CASTG 1 cut(s) 291
TseI GCWGC 3 cut(s) 509, 533, 833
TspDTI ATGAA 4 cut(s) 17, 375, 507, 544
TspGWI ACGGA 3 cut(s) 538, 587, 703
TspRI CASTG 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 439
XspI CTAG 2 cut(s) 497, 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.