Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000153

Physical Location & Seq

Genomic Coordinates Reverse (-)

18627691 .. 18643886

Gene Structure 16196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG197900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGAGGTTCATAAACAAAGACCCTGAAGGATTTGAAAAGATCAGCCAGAGGATGAAAATTCTTCAGGATTTGGTTCCTGGATGTAATAAGGTTATTGGGAAAGCACTTGTTGTTGATGAGATTATTAATTACATCCAGTCACTGCAGCGCCAAGTCGAGTTCCTTTCGTTGAACCTTGAAGCAGTCAATTCAAGGGTGAACATGAATCCCGCCATTGAAGTGTTTCCTTCAGAAGATGACATTGGCATTAGTGATTTGGCGAAAGAATCTACTGCGGACGATAGTCTTTGTGAGGATGACCATATTGAGCGGGGCGGATCAGATTTGTTAGGGGTTGGAGGGACATTGTTTGAGCCCCACCTCCCTGAGACAATACCGGGGGACAACGACGTTACTGCGACAATCTTGATAAATCAGGAAATGTGTCGAGGGCTGATTTGGAGATGCGGTTTAGAAAGTTTCTTGCTTGTTTCGACACTGAGGATTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

163

Amino Acids

18.06

Weight (kDa)

4.43

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH_SAC51	PF23173	12 - 52	8.3e-06	Transcription factor SAC51 bHLH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis	RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata	RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora	Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa	Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha	Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana	Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	310
AciI	CCGC	5 cut(s)	210, 275, 310, 315, 447
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	3 cut(s)	45, 47, 213
AgsI	TTSAA	5 cut(s)	35, 172, 179, 192, 218
AjnI	CCWGG	1 cut(s)	76
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	142
ApeKI	GCWGC	1 cut(s)	145
ApoI	RAATTY	1 cut(s)	57
AseI	ATTAAT	1 cut(s)	126
Asp700I	GAANNNNTTC	1 cut(s)	222
AspLEI	GCGC	1 cut(s)	150
AsuC2I	CCSGG	1 cut(s)	378
AsuHPI	GGTGA	1 cut(s)	208
BanII	GRGCYC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	157
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	378
BcoDI	GTCTC	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	151
BisI	GCNGC	1 cut(s)	146
BlsI	GCNGC	1 cut(s)	147
Bme1390I	CCNGG	2 cut(s)	78, 378
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	2 cut(s)	78, 378
BmsI	GCATC	1 cut(s)	434
BoxI	GACNNNNGTC	1 cut(s)	282
BpuMI	CCSGG	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	433, 463
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	4 cut(s)	57, 86, 132, 301
BseMII	CTCAG	2 cut(s)	357, 470
BseNI	ACTGG	1 cut(s)	136
BseXI	GCAGC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	377
BslFI	GGGAC	2 cut(s)	355, 395
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	2 cut(s)	355, 395
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	39, 317
BspACI	CCGC	5 cut(s)	210, 275, 310, 315, 447
BspCNI	CTCAG	2 cut(s)	358, 471
BspLI	GGNNCC	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	147
BspPI	GGATC	1 cut(s)	325
BsrBI	CCGCTC	1 cut(s)	310
BsrI	ACTGG	1 cut(s)	136
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	2 cut(s)	39, 317
Bst2UI	CCWGG	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	366, 479
BstF5I	GGATG	4 cut(s)	57, 86, 132, 301
BstH2I	RGCGCY	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	42, 320
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	2 cut(s)	39, 317
BstNI	CCWGG	1 cut(s)	78
BstPAI	GACNNNNGTC	1 cut(s)	282
BstSCI	CCNGG	2 cut(s)	76, 376
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	157
BtsCI	GGATG	4 cut(s)	57, 86, 132, 301
BtsI	GCAGTG	1 cut(s)	140
BtsIMutI	CAGTG	2 cut(s)	140, 476
CaiI	CAGNNNCTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	150
CviAII	CATG	1 cut(s)	202
CviJI	RGCY	3 cut(s)	45, 355, 433
CviKI_1	RGCY	3 cut(s)	45, 355, 433
DdeI	CTNAG	2 cut(s)	366, 479
DpnI	GATC	2 cut(s)	41, 319
DpnII	GATC	2 cut(s)	39, 317
EciI	GGCGGA	1 cut(s)	330
Eco24I	GRGCYC	1 cut(s)	357
Eco57I	CTGAAG	3 cut(s)	45, 47, 213
EcoRII	CCWGG	1 cut(s)	76
EcoT38I	GRGCYC	1 cut(s)	357
FaeI	CATG	1 cut(s)	205
FaiI	YATR	3 cut(s)	11, 203, 303
FaqI	GGGAC	2 cut(s)	355, 395
FatI	CATG	1 cut(s)	201
FauI	CCCGC	2 cut(s)	217, 303
Fnu4HI	GCNGC	1 cut(s)	146
FokI	GGATG	4 cut(s)	64, 93, 119, 308
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	146
GlaI	GCGC	1 cut(s)	149
GluI	GCNGC	1 cut(s)	146
HaeII	RGCGCY	1 cut(s)	151
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	150
Hin1II	CATG	1 cut(s)	205
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	205, 266
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	232, 322
Hpy188III	TCNNGA	3 cut(s)	65, 406, 416
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	2 cut(s)	20, 237
HpyCH4IV	ACGT	1 cut(s)	390
HpyCH4V	TGCA	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	366, 479
HpySE526I	ACGT	1 cut(s)	390
Hsp92II	CATG	1 cut(s)	205
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	39, 317
LpnPI	CCDG	9 cut(s)	36, 50, 59, 63, 90, 149, 378, 390, 401
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	434
MaeII	ACGT	1 cut(s)	390
MaeIII	GTNAC	2 cut(s)	138, 391
MalI	GATC	2 cut(s)	41, 319
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	2 cut(s)	39, 317
MboII	GAAGA	2 cut(s)	53, 245
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	3 cut(s)	57, 127, 187
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	6 cut(s)	42, 286, 332, 371, 422, 474
MroXI	GAANNNNTTC	1 cut(s)	222
MseI	TTAA	2 cut(s)	126, 490
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	2 cut(s)	78, 378
MvaI	CCWGG	1 cut(s)	78
NciI	CCSGG	1 cut(s)	378
NdeII	GATC	2 cut(s)	39, 317
NlaIII	CATG	1 cut(s)	205
NlaIV	GGNNCC	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	205, 266
PfoI	TCCNGGA	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	147
PshAI	GACNNNNGTC	1 cut(s)	282
PshBI	ATTAAT	1 cut(s)	126
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	147
PstNI	CAGNNNCTG	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	2 cut(s)	126, 490
SatI	GCNGC	1 cut(s)	146
Sau3AI	GATC	2 cut(s)	39, 317
ScrFI	CCNGG	2 cut(s)	78, 378
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	5 cut(s)	8, 93, 177, 363, 393
SfaNI	GCATC	1 cut(s)	434
SfcI	CTRYAG	1 cut(s)	143
SmiMI	CAYNNNNRTG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	57, 127, 187
SsiI	CCGC	5 cut(s)	210, 275, 310, 315, 447
StyD4I	CCNGG	2 cut(s)	76, 376
TaiI	ACGT	1 cut(s)	393
TaqI	TCGA	3 cut(s)	156, 427, 473
TasI	AATT	3 cut(s)	57, 127, 187
TfiI	GAWTC	2 cut(s)	205, 266
Tru1I	TTAA	2 cut(s)	126, 490
Tru9I	TTAA	2 cut(s)	126, 490
TscAI	CASTG	2 cut(s)	147, 483
TseFI	GTSAC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	138
TspDTI	ATGAA	2 cut(s)	68, 218
TspRI	CASTG	2 cut(s)	147, 483
VspI	ATTAAT	1 cut(s)	126
XapI	RAATTY	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.