FvH4_2g11190

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000153
Physical Location & Seq
Forward (+)
9753967 .. 9763589
9623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g11190.t1

Sequence Viewer

Length: 2217 bp
ATGTCGAAGAGCGCATCGGCACAAGTTCCGGGATATCTTCTCATCTTCGGCGTAGCGTCGCCGGTTCCGGCCGCCGCACGCCATAAGATCACCACCAAAACGTCCATTTTTCCCTCCTCTACCTCCTCATACTCACCAGGTCGACATGTATCCACTCCCGAAGGAGATCAAAGCCGAGGTAGCACGGCGGAGTTCGCCGATTTCAGGCGAGCTTGGGCAACGACAGCAACTTCGGTTTGTCGAGGTCATTTTCCGGTGAGACTTCCGGCGAGACCAGACGAGGACACACGGGTCGATGACGCCGACGTCGTCGACGGCGACTCCCGGGAGTTCCAAGGGTCTGGCACGCGCATCAGTCATACTAATCGCCGATTCATTGGGCAAGGGTTTCTCCAATCGCCACGGCTTCTAGGAGAAATATATATTTTATCTCTTGCAATGGACCAGGCATCTGACTCTTATCACCTTATTGAGCTTTGTGACCCTCACTTCCTGCTAGAGGATGATCTTACATCTGCTCTCGCCGCAGACGGTCGCAAGGGCAGCTCAGAGGAGATGTCTGGCGAGTTTTCCAAGTGCCTTATTTCTCCTAAATCTGTATCTAGGCTGCTCATTGAGCGGGGGGAATATTCTGCAGTGCCTATATGCTTCCGATATCCTGCGGAGGTCATTGCAGATTGGTCAGACTGGGTCTGCTTTGAGGTGCGGAAAAAGAAATTCGAAGAAGCCATTTGTAGTGCCGGGATAAAGCTTGCACTATTTATCTCTAGTTTTTGTGAGATTCATAAGGATGATATTTGCCTTCGTCACGTCGTGCGCAGATGGAGTCTCGAGACTCACACATTCATCTGCTCTTGGGGAGAGTTTACCCCTACCTTGGAAGACGTTTGCAACATCATGAGAATTCTTATCTTTGGGGAGGGTAATCCGTTCAGTATGGAGTTGGATGAAGCTCAAACCAAGAGATTGAAGACCCTGAAAAAGGGTGCTTACAGTTTCAAAGAGGCATTTCGTTTTTGCAACTGGGTGAGGCATTTTTGGGGTTCAGACAAAGGAGGGACTTTTCAAGGAGGTGAAGGTTTTAAGTTTGGCTGTCGGGTAGAGGCTATGCTTTCTTACTGGTTAATCACTTGTACCAGAACCTCGATCAGAGGGCAGTATGACATTGACACTTTAGTATCTACCTTCTTTCTTCAAGTGTTTGTGTGGGAGAGGTTTAAAGGCTTGGCAGTGGAGCCTACAAAACCTGAGTCCCTTTGTGAACCAGACGAGGGCAGAAAAGTTTTCAATTTAATGGTGTTCCCATTGTGTTTCAGATGGTTTGGGAAGAAAGCCAAAAAGGGTGCATTCAAGCCTGCCGTCATGGATAAAATTGAGCAGTTCAACTTCAGGCCGTACTTAGTTGATCATGGATTCTTAATATTTCCTTTCTTTCACGCAGAAAGGGGCTCATCATCATTCATAGGGCCTACAGAGTTGCTTCTGACTACTGCCGCACAGTCTATTGTGGCGTGTGATAATCTCTTTGGCCCTTCAAGGGAGAAATATTCCCCTCATAGAGTCAAAAGGCAATTTGGCATTGATCAGGACATGCCATCACACCTCTCTTTTGGTGGGCATATTGGCGATTGCATCGCGTCTTTTACTCAGATAGTTGTTACTTCCGGCGGGGACAAGCTTTCTGGCAGTCTTGGGAAAAAGGGCAGTGCTGCCTCTGCTGCATTAGCATTCTTAGGATTTTGGAAACAGCAACGGCGCGCATTCAAGGCTCTCAGTGTGGTGGGTCACCTCAAGGGTGTCAAAGGAGGAAGGAACAGTTGTGCTACAAAAGGCAAGGCAGGACTTTCTGAGAATGGTGGGAAAGGTAAAAACAAGAAGGTTCGTTGTTTTAAACCAAATGTGGTAAAAGACCGCGCTCCTCCTCCAACAGTCAAGAGTGTAAACCGCGTTAAACTGATACCTCCATTGAAATCGGCTGATGGGAAAGGGAGAAAGAGAAAAGCTGCTCCTGTATCGAGGCCGAGCGGTATTGCTAAGAAGAACTCCAGTATTCCCTTGAGGCGCAGTCCTCGTGTTGCTGTCATGACACCTTCCAAGTCTAAACCACCTGTTTATGAGGATTTTGATGAGGATTTCAAGGCGAAGAATCCGAGGGCGGAATCTTTTGAATGGGAAGATTCTGAAGACGGCGAAGATCAGGTGAAGAGAAAGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

739

Amino Acids

82.1

Weight (kDa)

9.32

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 254 - 375 7.4e-12 Plant mobile domain
PMD PF10536 396 - 535 7.1e-11 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 290, 305
AatII GACGTC 1 cut(s) 309
Acc16I TGCGCA 1 cut(s) 818
AccBSI CCGCTC 2 cut(s) 619, 2025
AccI GTMKAC 2 cut(s) 142, 312
AccII CGCG 5 cut(s) 349, 1637, 1758, 1914, 1947
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 2 cut(s) 716, 903
AcuI CTGAAG 2 cut(s) 1372, 2202
AcyI GRCGYC 2 cut(s) 300, 306
AdeI CACNNNGTG 1 cut(s) 814
AfaI GTAC 2 cut(s) 1135, 1397
AfiI CCNNNNNNNGG 6 cut(s) 204, 499, 877, 982, 1271, 1537
AflIII ACRYGT 1 cut(s) 145
AjiI CACGTC 1 cut(s) 811
AjnI CCWGG 2 cut(s) 136, 444
AluBI AGCT 8 cut(s) 212, 475, 546, 751, 953, 1678, 2003, 2212
AluI AGCT 8 cut(s) 212, 475, 546, 751, 953, 1678, 2003, 2212
Alw26I GTCTC 4 cut(s) 253, 265, 827, 833
Ama87I CYCGRG 2 cut(s) 324, 830
AoxI GGCC 5 cut(s) 69, 1391, 1466, 1528, 2018
ApeKI GCWGC 5 cut(s) 543, 607, 1709, 1718, 2003
ApoI RAATTY 2 cut(s) 716, 903
ArsI GACNNNNNNTTYG 4 cut(s) 214, 246, 1235, 1267
AspLEI GCGC 7 cut(s) 14, 351, 819, 1758, 1760, 1916, 2064
AspS9I GGNCC 3 cut(s) 442, 1466, 1529
AsuC2I CCSGG 4 cut(s) 30, 325, 326, 742
AsuHPI GGTGA 8 cut(s) 82, 126, 268, 455, 1039, 1085, 1778, 2212
AsuII TTCGAA 1 cut(s) 720
AvaI CYCGRG 2 cut(s) 324, 830
AvaII GGWCC 1 cut(s) 442
BaeI ACNNNNGTAYC 2 cut(s) 1161, 1194
BanII GRGCYC 1 cut(s) 1451
BauI CACGAG 1 cut(s) 2070
BbsI GAAGAC 3 cut(s) 888, 977, 2190
BbvI GCAGC 5 cut(s) 555, 594, 1696, 1705, 1990
BccI CCATC 4 cut(s) 816, 1311, 1603, 1973
BceAI ACGGC 7 cut(s) 201, 331, 419, 1343, 1378, 1769, 2203
BciT130I CCWGG 2 cut(s) 138, 446
BciVI GTATCC 1 cut(s) 160
BclI TGATCA 2 cut(s) 1405, 1582
BcnI CCSGG 4 cut(s) 30, 325, 326, 742
BcoDI GTCTC 4 cut(s) 253, 265, 827, 833
BfaI CTAG 4 cut(s) 410, 497, 603, 768
BfmI CTRYAG 2 cut(s) 633, 1470
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 9 cut(s) 72, 75, 525, 544, 608, 1494, 1710, 1719, 2004
BlsI GCNGC 9 cut(s) 73, 76, 526, 545, 609, 1495, 1711, 1720, 2005
Bme1390I CCNGG 6 cut(s) 30, 138, 325, 326, 446, 742
Bme18I GGWCC 1 cut(s) 442
BmeT110I CYCGRG 2 cut(s) 324, 830
BmgBI CACGTC 1 cut(s) 811
BmgT120I GGNCC 3 cut(s) 442, 1466, 1529
BmiI GGNNCC 2 cut(s) 66, 1236
BmrFI CCNGG 6 cut(s) 30, 138, 325, 326, 446, 742
BmrI ACTGGG 2 cut(s) 697, 1033
BmsI GCATC 4 cut(s) 23, 360, 458, 1641
BmuI ACTGGG 2 cut(s) 697, 1033
BpiI GAAGAC 3 cut(s) 888, 977, 2190
BpmI CTGGAG 1 cut(s) 2029
Bpu14I TTCGAA 1 cut(s) 720
BpuEI CTTGAG 2 cut(s) 1775, 2077
BpuMI CCSGG 4 cut(s) 30, 325, 326, 742
BsaHI GRCGYC 2 cut(s) 300, 306
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 6 cut(s) 175, 324, 334, 401, 876, 2150
BsaWI WCCGGW 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 305, 335
Bsc4I CCNNNNNNNGG 6 cut(s) 204, 499, 877, 982, 1271, 1537
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 4 cut(s) 692, 1028, 1124, 2046
Bse3DI GCAATG 2 cut(s) 444, 669
BseBI CCWGG 2 cut(s) 138, 446
BseDI CCNNGG 6 cut(s) 175, 324, 334, 401, 876, 2150
BseGI GGATG 3 cut(s) 508, 796, 952
BseLI CCNNNNNNNGG 6 cut(s) 204, 499, 877, 982, 1271, 1537
BseMI GCAATG 2 cut(s) 444, 669
BseMII CTCAG 5 cut(s) 561, 1239, 1661, 1786, 1839
BseNI ACTGG 4 cut(s) 692, 1028, 1124, 2046
BsePI GCGCGC 1 cut(s) 1756
BseRI GAGGAG 5 cut(s) 106, 115, 566, 1908, 1911
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 5 cut(s) 555, 594, 1696, 1705, 1990
Bsh1236I CGCG 5 cut(s) 349, 1637, 1758, 1914, 1947
Bsh1285I CGRYCG 2 cut(s) 72, 535
BshFI GGCC 5 cut(s) 71, 1393, 1468, 1530, 2020
BsiEI CGRYCG 2 cut(s) 72, 535
BsiHKCI CYCGRG 2 cut(s) 324, 830
BsiSI CCGG 8 cut(s) 29, 62, 68, 254, 266, 325, 741, 1665
BslFI GGGAC 3 cut(s) 1072, 1237, 1685
BslI CCNNNNNNNGG 6 cut(s) 204, 499, 877, 982, 1271, 1537
BsmAI GTCTC 4 cut(s) 253, 265, 827, 833
BsmFI GGGAC 3 cut(s) 1072, 1237, 1685
BsmI GAATGC 3 cut(s) 1346, 1727, 1760
BsnI GGCC 5 cut(s) 71, 1393, 1468, 1530, 2020
Bso31I GGTCTC 1 cut(s) 265
BsoBI CYCGRG 2 cut(s) 324, 830
Bsp119I TTCGAA 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 1451
Bsp143I GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
BspANI GGCC 5 cut(s) 71, 1393, 1468, 1530, 2020
BspCNI CTCAG 5 cut(s) 560, 1240, 1660, 1785, 1840
BspFNI CGCG 5 cut(s) 349, 1637, 1758, 1914, 1947
BspHI TCATGA 2 cut(s) 897, 2082
BspLI GGNNCC 2 cut(s) 66, 1236
BspMAI CTGCAG 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 2
BspT104I TTCGAA 1 cut(s) 720
BspTNI GGTCTC 1 cut(s) 265
BsrBI CCGCTC 2 cut(s) 619, 2025
BsrDI GCAATG 2 cut(s) 444, 669
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 4 cut(s) 692, 1028, 1124, 2046
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 6 cut(s) 175, 324, 334, 401, 876, 2150
BssHII GCGCGC 1 cut(s) 1756
BssMI GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
BssNI GRCGYC 2 cut(s) 300, 306
BssSI CACGAG 1 cut(s) 2070
BssT1I CCWWGG 2 cut(s) 334, 876
Bst2BI CACGAG 1 cut(s) 2070
Bst2UI CCWGG 2 cut(s) 138, 446
Bst4CI ACNGT 5 cut(s) 533, 995, 1500, 1817, 1930
Bst6I CTCTTC 2 cut(s) 2, 2198
BstACI GRCGYC 2 cut(s) 300, 306
BstBI TTCGAA 1 cut(s) 720
BstC8I GCNNGC 6 cut(s) 79, 210, 347, 753, 1356, 1758
BstDEI CTNAG 8 cut(s) 547, 1248, 1399, 1647, 1732, 1772, 1848, 2034
BstDSI CCRYGG 1 cut(s) 401
BstEII GGTNACC 1 cut(s) 1784
BstENI CCTNNNNNAGG 2 cut(s) 497, 980
BstF5I GGATG 3 cut(s) 508, 796, 952
BstFNI CGCG 5 cut(s) 349, 1637, 1758, 1914, 1947
BstHHI GCGC 7 cut(s) 14, 351, 819, 1758, 1760, 1916, 2064
BstKTI GATC 7 cut(s) 90, 169, 508, 1149, 1408, 1585, 2197
BstMAI GTCTC 4 cut(s) 253, 265, 827, 833
BstMBI GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
BstMCI CGRYCG 2 cut(s) 72, 535
BstNI CCWGG 2 cut(s) 138, 446
BstNSI RCATGY 2 cut(s) 149, 1594
BstPI GGTNACC 1 cut(s) 1784
BstSCI CCNGG 6 cut(s) 28, 136, 323, 324, 444, 740
BstSFI CTRYAG 2 cut(s) 633, 1470
BstUI CGCG 5 cut(s) 349, 1637, 1758, 1914, 1947
BstV1I GCAGC 5 cut(s) 555, 594, 1696, 1705, 1990
BstV2I GAAGAC 3 cut(s) 888, 977, 2190
BstXI CCANNNNNNTGG 1 cut(s) 341
BstZI CGGCCG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 5 cut(s) 71, 1393, 1468, 1530, 2020
BtgI CCRYGG 1 cut(s) 401
BtgZI GCGATG 1 cut(s) 1618
BtrI CACGTC 1 cut(s) 811
BtsCI GGATG 3 cut(s) 508, 796, 952
BtsI GCAGTG 3 cut(s) 642, 1236, 1711
BtsIMutI CAGTG 4 cut(s) 642, 1236, 1711, 1780
Cac8I GCNNGC 6 cut(s) 79, 210, 347, 753, 1356, 1758
CciI TCATGA 2 cut(s) 897, 2082
CfoI GCGC 7 cut(s) 14, 351, 819, 1758, 1760, 1916, 2064
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 3 cut(s) 442, 1466, 1529
Cfr9I CCCGGG 1 cut(s) 324
CseI GACGC 3 cut(s) 45, 308, 1626
CsiI ACCWGGT 1 cut(s) 136
Csp6I GTAC 2 cut(s) 1134, 1396
CviAII CATG 6 cut(s) 146, 898, 1363, 1409, 1591, 2083
CviQI GTAC 2 cut(s) 1134, 1396
DdeI CTNAG 8 cut(s) 547, 1248, 1399, 1647, 1732, 1772, 1848, 2034
DpnI GATC 7 cut(s) 89, 168, 507, 1148, 1407, 1584, 2196
DpnII GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
DraI TTTAAA 2 cut(s) 1219, 1891
DraIII CACNNNGTG 1 cut(s) 814
DrdI GACNNNNNNGTC 2 cut(s) 290, 305
DseDI GACNNNNNNGTC 2 cut(s) 290, 305
EaeI YGGCCR 1 cut(s) 69
EagI CGGCCG 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 2, 2198
EarI CTCTTC 2 cut(s) 2, 2198
EciI GGCGGA 2 cut(s) 203, 2171
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 2 cut(s) 334, 876
Eco24I GRGCYC 1 cut(s) 1451
Eco31I GGTCTC 1 cut(s) 265
Eco32I GATATC 2 cut(s) 35, 656
Eco47I GGWCC 1 cut(s) 442
Eco52I CGGCCG 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 1372, 2202
Eco88I CYCGRG 2 cut(s) 324, 830
Eco91I GGTNACC 1 cut(s) 1784
EcoNI CCTNNNNNAGG 2 cut(s) 497, 980
EcoO109I RGGNCCY 1 cut(s) 1466
EcoO65I GGTNACC 1 cut(s) 1784
EcoRI GAATTC 1 cut(s) 903
EcoRII CCWGG 2 cut(s) 136, 444
EcoRV GATATC 2 cut(s) 35, 656
EcoT14I CCWWGG 2 cut(s) 334, 876
EcoT38I GRGCYC 1 cut(s) 1451
ErhI CCWWGG 2 cut(s) 334, 876
FaeI CATG 6 cut(s) 149, 901, 1366, 1412, 1594, 2086
FaqI GGGAC 3 cut(s) 1072, 1237, 1685
FatI CATG 6 cut(s) 145, 897, 1362, 1408, 1590, 2082
FauI CCCGC 2 cut(s) 612, 1661
FbaI TGATCA 2 cut(s) 1405, 1582
FblI GTMKAC 2 cut(s) 142, 312
Fnu4HI GCNGC 9 cut(s) 72, 75, 525, 544, 608, 1494, 1710, 1719, 2004
FokI GGATG 3 cut(s) 515, 803, 959
FriOI GRGCYC 1 cut(s) 1451
Fsp4HI GCNGC 9 cut(s) 72, 75, 525, 544, 608, 1494, 1710, 1719, 2004
FspBI CTAG 4 cut(s) 410, 497, 603, 768
FspI TGCGCA 1 cut(s) 818
GlaI GCGC 7 cut(s) 13, 350, 818, 1757, 1759, 1915, 2063
GluI GCNGC 9 cut(s) 72, 75, 525, 544, 608, 1494, 1710, 1719, 2004
GsuI CTGGAG 1 cut(s) 2029
HaeIII GGCC 5 cut(s) 71, 1393, 1468, 1530, 2020
HapII CCGG 8 cut(s) 29, 62, 68, 254, 266, 325, 741, 1665
HgaI GACGC 3 cut(s) 45, 308, 1626
HhaI GCGC 7 cut(s) 14, 351, 819, 1758, 1760, 1916, 2064
Hin1I GRCGYC 2 cut(s) 300, 306
Hin1II CATG 6 cut(s) 149, 901, 1366, 1412, 1594, 2086
Hin6I GCGC 7 cut(s) 12, 349, 817, 1756, 1758, 1914, 2062
HinP1I GCGC 7 cut(s) 12, 349, 817, 1756, 1758, 1914, 2062
HincII GTYRAC 2 cut(s) 143, 313
HindII GTYRAC 2 cut(s) 143, 313
HindIII AAGCTT 2 cut(s) 749, 1676
HpaII CCGG 8 cut(s) 29, 62, 68, 254, 266, 325, 741, 1665
HphI GGTGA 8 cut(s) 82, 126, 268, 455, 1039, 1085, 1778, 2212
Hpy166II GTNNAC 5 cut(s) 143, 313, 867, 1262, 1942
Hpy188III TCNNGA 7 cut(s) 158, 830, 832, 898, 1586, 1933, 2083
Hpy8I GTNNAC 5 cut(s) 143, 313, 867, 1262, 1942
Hpy99I CGWCG 6 cut(s) 61, 308, 311, 314, 317, 815
HpyAV CCTTC 8 cut(s) 155, 812, 1070, 1195, 1542, 1803, 1870, 2100
HpyCH4III ACNGT 5 cut(s) 533, 995, 1500, 1817, 1930
HpyCH4IV ACGT 4 cut(s) 101, 306, 810, 885
HpyCH4V TGCA 9 cut(s) 437, 635, 674, 755, 891, 1020, 1346, 1632, 1721
HpyF3I CTNAG 8 cut(s) 547, 1248, 1399, 1647, 1732, 1772, 1848, 2034
HpySE526I ACGT 4 cut(s) 101, 306, 810, 885
Hsp92I GRCGYC 2 cut(s) 300, 306
Hsp92II CATG 6 cut(s) 149, 901, 1366, 1412, 1594, 2086
HspAI GCGC 7 cut(s) 12, 349, 817, 1756, 1758, 1914, 2062
Ksp22I TGATCA 2 cut(s) 1405, 1582
Kzo9I GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
LguI GCTCTTC 1 cut(s) 2
LmnI GCTCC 3 cut(s) 1234, 1921, 2011
Lsp1109I GCAGC 5 cut(s) 555, 594, 1696, 1705, 1990
LweI GCATC 4 cut(s) 23, 360, 458, 1641
MabI ACCWGGT 1 cut(s) 136
MaeI CTAG 4 cut(s) 410, 497, 603, 768
MaeII ACGT 4 cut(s) 101, 306, 810, 885
MaeIII GTNAC 4 cut(s) 479, 806, 1657, 1784
MalI GATC 7 cut(s) 89, 168, 507, 1148, 1407, 1584, 2196
MbiI CCGCTC 2 cut(s) 619, 2025
MboI GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
MhlI GDGCHC 1 cut(s) 1451
MluCI AATT 5 cut(s) 716, 903, 1288, 1371, 1571
MlyI GAGTC 6 cut(s) 314, 449, 829, 835, 1259, 1569
MmeI TCCRAC 2 cut(s) 924, 1949
MseI TTAA 7 cut(s) 1083, 1124, 1218, 1292, 1418, 1890, 1950
MslI CAYNNNNRTG 1 cut(s) 789
MspI CCGG 8 cut(s) 29, 62, 68, 254, 266, 325, 741, 1665
MspR9I CCNGG 6 cut(s) 30, 138, 325, 326, 446, 742
Mva1269I GAATGC 3 cut(s) 1346, 1727, 1760
MvaI CCWGG 2 cut(s) 138, 446
MvnI CGCG 5 cut(s) 349, 1637, 1758, 1914, 1947
NciI CCSGG 4 cut(s) 30, 325, 326, 742
NdeII GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
NlaIII CATG 6 cut(s) 149, 901, 1366, 1412, 1594, 2086
NlaIV GGNNCC 2 cut(s) 66, 1236
NmeAIII GCCGAG 2 cut(s) 200, 2046
NmuCI GTSAC 3 cut(s) 479, 806, 1784
NsbI TGCGCA 1 cut(s) 818
NspI RCATGY 2 cut(s) 149, 1594
NspV TTCGAA 1 cut(s) 720
PaeR7I CTCGAG 1 cut(s) 830
PagI TCATGA 2 cut(s) 897, 2082
PauI GCGCGC 1 cut(s) 1756
PciI ACATGT 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 2
PcsI WCGNNNNNNNCGW 3 cut(s) 300, 306, 315
PctI GAATGC 3 cut(s) 1346, 1727, 1760
PfeI GAWTC 6 cut(s) 372, 781, 1413, 2146, 2159, 2177
PflFI GACNNNGTC 2 cut(s) 308, 689
PfoI TCCNGGA 1 cut(s) 28
PkrI GCNGC 9 cut(s) 73, 76, 526, 545, 609, 1495, 1711, 1720, 2005
PleI GAGTC 6 cut(s) 314, 449, 829, 834, 1258, 1568
PpsI GAGTC 6 cut(s) 314, 449, 829, 834, 1258, 1568
PscI ACATGT 1 cut(s) 145
Psp6I CCWGG 2 cut(s) 136, 444
PspEI GGTNACC 1 cut(s) 1784
PspGI CCWGG 2 cut(s) 136, 444
PspN4I GGNNCC 2 cut(s) 66, 1236
PspPI GGNCC 3 cut(s) 442, 1466, 1529
PstI CTGCAG 1 cut(s) 637
PsyI GACNNNGTC 2 cut(s) 308, 689
PteI GCGCGC 1 cut(s) 1756
RsaI GTAC 2 cut(s) 1135, 1397
RsaNI GTAC 2 cut(s) 1134, 1396
RseI CAYNNNNRTG 1 cut(s) 789
SalI GTCGAC 2 cut(s) 141, 311
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 7 cut(s) 1083, 1124, 1218, 1292, 1418, 1890, 1950
SatI GCNGC 9 cut(s) 72, 75, 525, 544, 608, 1494, 1710, 1719, 2004
Sau3AI GATC 7 cut(s) 87, 166, 505, 1146, 1405, 1582, 2194
Sau96I GGNCC 3 cut(s) 442, 1466, 1529
SchI GAGTC 6 cut(s) 314, 449, 829, 835, 1259, 1569
ScrFI CCNGG 6 cut(s) 30, 138, 325, 326, 446, 742
SduI GDGCHC 1 cut(s) 1451
SexAI ACCWGGT 1 cut(s) 136
SfaNI GCATC 4 cut(s) 23, 360, 458, 1641
SfcI CTRYAG 2 cut(s) 633, 1470
Sfr274I CTCGAG 1 cut(s) 830
SfuI TTCGAA 1 cut(s) 720
SgrDI CGTCGACG 1 cut(s) 311
SinI GGWCC 1 cut(s) 442
SlaI CTCGAG 1 cut(s) 830
SmaI CCCGGG 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 789
SmlI CTYRAG 3 cut(s) 830, 1790, 2056
SmoI CTYRAG 3 cut(s) 830, 1790, 2056
Sse9I AATT 5 cut(s) 716, 903, 1288, 1371, 1571
SspI AATATT 3 cut(s) 629, 1422, 1547
SspMI CTAG 4 cut(s) 410, 497, 603, 768
StyD4I CCNGG 6 cut(s) 28, 136, 323, 324, 444, 740
StyI CCWWGG 2 cut(s) 334, 876
TaaI ACNGT 5 cut(s) 533, 995, 1500, 1817, 1930
TaiI ACGT 4 cut(s) 104, 309, 813, 888
TaqI TCGA 9 cut(s) 5, 142, 241, 294, 312, 720, 831, 1145, 2015
TasI AATT 5 cut(s) 716, 903, 1288, 1371, 1571
TauI GCSGC 4 cut(s) 74, 77, 527, 1496
TfiI GAWTC 6 cut(s) 372, 781, 1413, 2146, 2159, 2177
Tru1I TTAA 7 cut(s) 1083, 1124, 1218, 1292, 1418, 1890, 1950
Tru9I TTAA 7 cut(s) 1083, 1124, 1218, 1292, 1418, 1890, 1950
TscAI CASTG 4 cut(s) 642, 1236, 1711, 1780
TseFI GTSAC 3 cut(s) 479, 806, 1784
TseI GCWGC 5 cut(s) 543, 607, 1709, 1718, 2003
Tsp45I GTSAC 3 cut(s) 479, 806, 1784
TspDTI ATGAA 5 cut(s) 364, 773, 835, 963, 1450
TspGWI ACGGA 1 cut(s) 918
TspMI CCCGGG 1 cut(s) 324
TspRI CASTG 4 cut(s) 642, 1236, 1711, 1780
Tth111I GACNNNGTC 2 cut(s) 308, 689
VpaK11BI GGWCC 1 cut(s) 442
XagI CCTNNNNNAGG 2 cut(s) 497, 980
XapI RAATTY 2 cut(s) 716, 903
XceI RCATGY 2 cut(s) 149, 1594
XhoI CTCGAG 1 cut(s) 830
XmaI CCCGGG 1 cut(s) 324
XmiI GTMKAC 2 cut(s) 142, 312
XspI CTAG 4 cut(s) 410, 497, 603, 768
ZraI GACGTC 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.