Rmu_sc0001763.1_g000006

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001763.1
OG0000153
Physical Location & Seq
Forward (+)
20312 .. 26772
6461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001763.1_g000006.1.cds

Sequence Viewer

Length: 3582 bp
atggagtcttggaaacaggggatgattgttgcagccatgcgcaaaaactgcagcagaaatagctgcggtgacaggaaatctggaacgaggttgaaggggcagctagggagctgtgaactcatcgttcaagaggaaagaggatatctgcttaccatgtatttagcagctgcggggaaagagaagggagatagaagaaaacgatactccacagttttgcttctcttcccgcttaaggagtgttggactcttcgtgttctgtctgagactttgagctcgcgtcccttgaagattccagagatccctgaacctactggactttcggattcgaggagggcctcccttttgtttgtaatggcacaaacatctgactcttctcagcctacagaacttcatgaccatcacttctcactggaagatggtctcattcctgtttccaccgcgggggcctgtgagggtagctcagaggaggcatttcatgagttttctgggtgctttgtctctcccaagttcttatccaggttgcttattgagcggggagagtaccctgcagtgcctatatgtttccggtatcctgcaaggactcctgcgggttggcctgaatgggtcagctttgaggtacaacaggaagagcttgaagaggcccttattggagctggagtgaagatttcactgtttatttccagcttttgtggggtttataaagatgacatttgccttcgccacgtggtgcgaagatggagtcctgaaactcacacgtttgtctgttcttggggggaatttactccttctctggaagatgtttgcaatattatgcgaatccctattgttggggatggtaatcctttcaagatagagctaaacaaagagcagaagatgaagctgcagattctgaagaagggtgcttatgattctaaagaagtgttccgtttttgttactgggtgagacacttttggggctcgatggacggaggcaagtttaggcatggtgcaggttttgaatctggctgccgggtggaagccatgtttgcttattggttgagcaggttcattttcacagattttccctatgagaatgtgcagccgcgagtcttcccgttggccattatgctagcagccggtacttgttttccacttgctcctctcttccttggtcatttatataggaaacttgatcagatttcaaaggatgataaagaaggtgcggggcagtacggtgttgattctctagtatctagttttttccttcaagcgtttgtatgggagagattcgaaggtttggctgtggaacccgcaactcctgagtccctccaccaccttgcgggaggtaaaagggacttcaatctagtaggattcccattgtgttgtaggtggttcagaaggaaggccaagaagggtgcattcaggcctgttgttttggatgacatcgggaaattcaatttcagaccatatttcgctgctcatggcttccagacctttcctttcttttacccagagggtaactcatcaccgttcctagagccggttgagctgcttctaaccactagtgcgcagtccataatagcatgtggtgatttctttgaccccgtgatggagaagtactctcctcatagagttaagaggcaatttggcatcgaccaggatgtgccatcgcatctatcctatggtggacatcttggggattgcatcatgagtttcactcggacagatggtatttcctgtaggggtatgctctctgatagtctcgggaagaaaggctgtgttggatcccctacatctacattcttgaggttttgggagttgcagcggtgcgagtttaggaggtttattcaaactggtgggactaggttgcgtccgaaagccactagtgagaacaagagactactccacagtagcactgtcatgggtgtcatgtctagacttaaccttccctatactgaggtatactcgaatggtgtaaggcgtgtggttggttacctcaagggtggtagaagcggagatgatcctgaagtagagttgccagctgccggagtggagaaaggtagcaagagcactacaaagggtaaagtcagggcttccgaggatggaggggatggcagaaggaaggtttgtcgctttaaacctaaggtaaccaaagatcgtatccctcctccagtagtcaagagtgcctttggtgttaaggtgatactgccatcgagttcggcttgtgaaaaagggaagaagaggaaagatgctcctaccctgagaccaagtggggttattaagaggaagattgcagatgatgcctctcccgccgtccttaggcggagttcccgcgtggccaacatgaacttttgtaaacgtgaaccgtcgtccaagggtgatgtttatgttgatcttagtgatgggccaagtgtcgacggggacggcagccccctgagtgatgaggagaatgagtctgatacttatgagggaaagacttgcgatggtggtagccaggtggagtcttttgaagatgaggatggtcagggtgatccaactatagcttcgatgggggaggatagctgcggtgataaccaaggagctcatgtcggtgtcttggtgggaggttacgagcataatgttagtggaatatacgaccgaggcctgctgcatgtagctggtactctaatgcaggaatctgctgtaaatgttggcccttgtgtagataattgtaatgtgcaggacattggcattagtgatttggcgaaagaatctactgcggatgatagtctttgtgaggatgaccataatgagcggggcggatcagatttgttaggggttggagggacattgtttgagccccacctctctgagacagtaccgggggacaatgaagttactgcgacaatcttgatcggtggaggaactccactttgtgtttcctcttctcgctctcatgcccctaactcagataaatcaggaagtgtgtcgagggctgatttggagatgcggtttagaaagtttcttgcttgttttgatactgaggatcgcttaagtattaccattgatgacattgcgcgcccattgagtggtatcagatctccatttgagggtgggaaagtcccctcggagttcgtggctccacttactaaatttgctgaaaggtacggtggaggtagtttctctagcttgtttgtagatggaaagagtgcccgtcagaaacaaaaattggttgaggagtttggttccgtgttgtatagcatggagatcgaagaagtgaaaaatgaggagacttttttaatttggagggatgcatgccgtgacatcatagattgggggcttaaggtcgacttcatacttgattatttgaagcaggctgctaaggatttctttggtcatatgctcagacccagtggatcagaaagtagttgcaggaagatccttcaaatggaggaagctgtatccaagttgagggaaaagcttttgcatcttgaacaacacctaggaaaggcgcgagatgacttatgcaccaagcttggtgatgacattagcttagatagcaagacctgcatattaagatcttcttgggttgctcagagccgtgcaactcatggcttgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1193

Amino Acids

132.21

Weight (kDa)

6.41

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
Acc16I TGCGCA 2 cut(s) 41, 1548
Acc36I ACCTGC 3 cut(s) 980, 1032, 3533
AccB7I CCANNNNNTGG 1 cut(s) 3047
AccBSI CCGCTC 2 cut(s) 532, 2773
AccI GTMKAC 3 cut(s) 1941, 2394, 3306
AccII CGCG 6 cut(s) 277, 440, 1084, 2313, 3037, 3472
AclWI GGATC 9 cut(s) 292, 1758, 1771, 1994, 2504, 2788, 3012, 3382, 3391
AcoI YGGCCR 2 cut(s) 1098, 2316
AcsI RAATTY 3 cut(s) 776, 1430, 3110
AcuI CTGAAG 2 cut(s) 911, 2025
AcvI CACGTG 1 cut(s) 724
AdeI CACNNNGTG 2 cut(s) 727, 2894
AfaI GTAC 8 cut(s) 542, 618, 1120, 1211, 1598, 2641, 2838, 3125
AflII CTTAAG 3 cut(s) 230, 3010, 3299
AflIII ACRYGT 1 cut(s) 753
AhlI ACTAGT 2 cut(s) 1541, 1862
AjnI CCWGG 3 cut(s) 515, 1635, 2472
AjuI GAANNNNNNNTTGG 4 cut(s) 2506, 2538, 3170, 3202
Alw21I GWGCWC 3 cut(s) 275, 2051, 2563
Alw26I GTCTC 9 cut(s) 257, 425, 502, 937, 1745, 1870, 2236, 2825, 3242
AlwI GGATC 9 cut(s) 292, 1758, 1771, 1994, 2504, 2788, 3012, 3382, 3391
AlwNI CAGNNNCTG 1 cut(s) 889
Ama87I CYCGRG 1 cut(s) 1742
ApoI RAATTY 3 cut(s) 776, 1430, 3110
ArsI GACNNNNNNTTYG 2 cut(s) 724, 756
AspA2I CCTAGG 1 cut(s) 3460
AspLEI GCGC 5 cut(s) 42, 1549, 3037, 3039, 3472
AspS9I GGNCC 5 cut(s) 333, 444, 640, 2384, 2672
AsuC2I CCSGG 2 cut(s) 1010, 2841
AsuHPI GGTGA 9 cut(s) 80, 952, 1497, 1580, 2191, 2369, 2519, 2558, 3509
AsuII TTCGAA 1 cut(s) 1269
AsuNHI GCTAGC 1 cut(s) 1108
AvaI CYCGRG 1 cut(s) 1742
AvrII CCTAGG 1 cut(s) 3460
AxyI CCTNAGG 2 cut(s) 2121, 2297
BaeGI GKGCMC 1 cut(s) 3172
BalI TGGCCA 2 cut(s) 1100, 2318
BamHI GGATCC 1 cut(s) 1763
BanII GRGCYC 4 cut(s) 275, 959, 2563, 2820
BbrPI CACGTG 1 cut(s) 724
BbsI GAAGAC 1 cut(s) 1081
Bbv12I GWGCWC 3 cut(s) 275, 2051, 2563
BceAI ACGGC 4 cut(s) 2276, 2419, 3261, 3543
BcgI CGANNNNNNTGC 2 cut(s) 3208, 3242
BciT130I CCWGG 3 cut(s) 517, 1637, 2474
BciVI GTATCC 3 cut(s) 579, 2150, 3430
BclI TGATCA 1 cut(s) 1171
BcnI CCSGG 2 cut(s) 1010, 2841
BcoDI GTCTC 9 cut(s) 257, 425, 502, 937, 1745, 1870, 2236, 2825, 3242
BcuI ACTAGT 2 cut(s) 1541, 1862
BfmI CTRYAG 6 cut(s) 49, 381, 546, 881, 1717, 2517
BfrI CTTAAG 3 cut(s) 230, 3010, 3299
BfuAI ACCTGC 3 cut(s) 980, 1032, 3533
BfuI GTATCC 3 cut(s) 579, 2150, 3430
BglII AGATCT 2 cut(s) 3056, 3536
BlnI CCTAGG 1 cut(s) 3460
BmcAI AGTACT 1 cut(s) 1598
Bme1390I CCNGG 5 cut(s) 517, 1010, 1637, 2474, 2841
BmeT110I CYCGRG 1 cut(s) 1742
BmgT120I GGNCC 5 cut(s) 333, 444, 640, 2384, 2672
BmiI GGNNCC 5 cut(s) 445, 1287, 1765, 3099, 3205
BmrFI CCNGG 5 cut(s) 517, 1010, 1637, 2474, 2841
BmrI ACTGGG 2 cut(s) 946, 3363
BmsI GCATC 8 cut(s) 1638, 1660, 1692, 2218, 2269, 2955, 3259, 3454
BmtI GCTAGC 1 cut(s) 1112
BmuI ACTGGG 2 cut(s) 946, 3363
BpiI GAAGAC 1 cut(s) 1081
BpmI CTGGAG 2 cut(s) 675, 2133
Bpu10I CCTNAGC 1 cut(s) 3339
Bpu14I TTCGAA 1 cut(s) 1269
BpuEI CTTGAG 2 cut(s) 1804, 1961
BpuMI CCSGG 2 cut(s) 1010, 2841
BsaAI YACGTR 1 cut(s) 724
BsaBI GATNNNNATC 1 cut(s) 837
BsaI GGTCTC 2 cut(s) 425, 2236
BsaJI CCNNGG 9 cut(s) 438, 1147, 2076, 2352, 2554, 2617, 2840, 3084, 3460
BsaWI WCCGGW 1 cut(s) 564
BsaXI ACNNNNNCTCC 8 cut(s) 642, 672, 2417, 2447, 2550, 2580, 2954, 2984
Bse118I RCCGGY 2 cut(s) 1115, 1519
Bse1I ACTGG 6 cut(s) 316, 414, 941, 1837, 2150, 3369
Bse21I CCTNAGG 2 cut(s) 2121, 2297
Bse3DI GCAATG 1 cut(s) 3030
Bse8I GATNNNNATC 1 cut(s) 837
BseBI CCWGG 3 cut(s) 517, 1637, 2474
BseDI CCNNGG 9 cut(s) 438, 1147, 2076, 2352, 2554, 2617, 2840, 3084, 3460
BseJI GATNNNNATC 1 cut(s) 837
BseMI GCAATG 1 cut(s) 3030
BseNI ACTGG 6 cut(s) 316, 414, 941, 1837, 2150, 3369
BsePI GCGCGC 1 cut(s) 3035
BseRI GAGGAG 8 cut(s) 343, 479, 1128, 1593, 2136, 2438, 3209, 3260
BseSI GKGCMC 1 cut(s) 3172
BsgI GTGCAG 3 cut(s) 1008, 1097, 2717
Bsh1236I CGCG 6 cut(s) 277, 440, 1084, 2313, 3037, 3472
Bsh1285I CGRYCG 1 cut(s) 2617
BsiEI CGRYCG 1 cut(s) 2617
BsiHKAI GWGCWC 3 cut(s) 275, 2051, 2563
BsiHKCI CYCGRG 1 cut(s) 1742
BsiSI CCGG 6 cut(s) 565, 1009, 1116, 1520, 2025, 2840
BslFI GGGAC 8 cut(s) 264, 1288, 1346, 1852, 2414, 2818, 2858, 3065
BsmAI GTCTC 9 cut(s) 257, 425, 502, 937, 1745, 1870, 2236, 2825, 3242
BsmFI GGGAC 8 cut(s) 264, 1288, 1346, 1852, 2414, 2818, 2858, 3065
BsmI GAATGC 1 cut(s) 1397
Bso31I GGTCTC 2 cut(s) 425, 2236
BsoBI CYCGRG 1 cut(s) 1742
Bsp119I TTCGAA 1 cut(s) 1269
Bsp1286I GDGCHC 6 cut(s) 275, 959, 2051, 2563, 2820, 3172
BspFNI CGCG 6 cut(s) 277, 440, 1084, 2313, 3037, 3472
BspHI TCATGA 3 cut(s) 391, 475, 1686
BspLI GGNNCC 5 cut(s) 445, 1287, 1765, 3099, 3205
BspMAI CTGCAG 3 cut(s) 53, 550, 885
BspMI ACCTGC 3 cut(s) 980, 1032, 3533
BspOI GCTAGC 1 cut(s) 1112
BspPI GGATC 9 cut(s) 292, 1758, 1771, 1994, 2504, 2788, 3012, 3382, 3391
BspQI GCTCTTC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 1269
BspTI CTTAAG 3 cut(s) 230, 3010, 3299
BspTNI GGTCTC 2 cut(s) 425, 2236
BsrBI CCGCTC 2 cut(s) 532, 2773
BsrDI GCAATG 1 cut(s) 3030
BsrFI RCCGGY 2 cut(s) 1115, 1519
BsrI ACTGG 6 cut(s) 316, 414, 941, 1837, 2150, 3369
BssAI RCCGGY 2 cut(s) 1115, 1519
BssECI CCNNGG 9 cut(s) 438, 1147, 2076, 2352, 2554, 2617, 2840, 3084, 3460
BssHII GCGCGC 1 cut(s) 3035
BssNAI GTATAC 1 cut(s) 1942
BssT1I CCWWGG 4 cut(s) 1147, 2352, 2554, 3460
Bst1107I GTATAC 1 cut(s) 1942
Bst2UI CCWGG 3 cut(s) 517, 1637, 2474
Bst4CI ACNGT 9 cut(s) 211, 672, 1214, 1509, 1889, 1897, 2346, 2836, 3128
Bst6I CTCTTC 8 cut(s) 227, 252, 376, 621, 630, 1148, 2213, 2908
BstAFI CTTAAG 3 cut(s) 230, 3010, 3299
BstAPI GCANNNNNTGC 3 cut(s) 48, 2279, 3525
BstBAI YACGTR 1 cut(s) 724
BstBI TTCGAA 1 cut(s) 1269
BstC8I GCNNGC 7 cut(s) 275, 1110, 2019, 2624, 3037, 3274, 3333
BstDSI CCRYGG 1 cut(s) 438
BstEII GGTNACC 2 cut(s) 1970, 2125
BstENI CCTNNNNNAGG 1 cut(s) 3464
BstFNI CGCG 6 cut(s) 277, 440, 1084, 2313, 3037, 3472
BstHHI GCGC 5 cut(s) 42, 1549, 3037, 3039, 3472
BstMAI GTCTC 9 cut(s) 257, 425, 502, 937, 1745, 1870, 2236, 2825, 3242
BstMCI CGRYCG 1 cut(s) 2617
BstMWI GCNNNNNNNGC 9 cut(s) 48, 60, 529, 1025, 1525, 2279, 2288, 3516, 3525
BstNI CCWGG 3 cut(s) 517, 1637, 2474
BstNSI RCATGY 3 cut(s) 1566, 2633, 3276
BstPI GGTNACC 2 cut(s) 1970, 2125
BstSCI CCNGG 5 cut(s) 515, 1008, 1635, 2472, 2839
BstSFI CTRYAG 6 cut(s) 49, 381, 546, 881, 1717, 2517
BstSLI GKGCMC 1 cut(s) 3172
BstUI CGCG 6 cut(s) 277, 440, 1084, 2313, 3037, 3472
BstV2I GAAGAC 1 cut(s) 1081
BstX2I RGATCY 5 cut(s) 297, 1763, 3056, 3396, 3536
BstYI RGATCY 5 cut(s) 297, 1763, 3056, 3396, 3536
BstZ17I GTATAC 1 cut(s) 1942
Bsu36I CCTNAGG 2 cut(s) 2121, 2297
BsuI GTATCC 3 cut(s) 579, 2150, 3430
BtgI CCRYGG 1 cut(s) 438
BtgZI GCGATG 2 cut(s) 1632, 2475
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 5 cut(s) 407, 555, 668, 1893, 3376
BveI ACCTGC 3 cut(s) 980, 1032, 3533
Cac8I GCNNGC 7 cut(s) 275, 1110, 2019, 2624, 3037, 3274, 3333
CaiI CAGNNNCTG 1 cut(s) 889
CciI TCATGA 3 cut(s) 391, 475, 1686
CfoI GCGC 5 cut(s) 42, 1549, 3037, 3039, 3472
Cfr10I RCCGGY 2 cut(s) 1115, 1519
Cfr13I GGNCC 5 cut(s) 333, 444, 640, 2384, 2672
Cfr42I CCGCGG 1 cut(s) 441
CseI GACGC 2 cut(s) 266, 1838
Csp6I GTAC 8 cut(s) 541, 617, 1119, 1210, 1597, 2640, 2837, 3124
CviQI GTAC 8 cut(s) 541, 617, 1119, 1210, 1597, 2640, 2837, 3124
DraI TTTAAA 1 cut(s) 2116
DraIII CACNNNGTG 2 cut(s) 727, 2894
EaeI YGGCCR 2 cut(s) 1098, 2316
Eam1104I CTCTTC 8 cut(s) 227, 252, 376, 621, 630, 1148, 2213, 2908
EarI CTCTTC 8 cut(s) 227, 252, 376, 621, 630, 1148, 2213, 2908
EciI GGCGGA 2 cut(s) 2317, 2793
Ecl136II GAGCTC 2 cut(s) 273, 2561
Eco130I CCWWGG 4 cut(s) 1147, 2352, 2554, 3460
Eco147I AGGCCT 2 cut(s) 1405, 2622
Eco24I GRGCYC 4 cut(s) 275, 959, 2563, 2820
Eco31I GGTCTC 2 cut(s) 425, 2236
Eco32I GATATC 1 cut(s) 143
Eco53kI GAGCTC 2 cut(s) 273, 2561
Eco57I CTGAAG 2 cut(s) 911, 2025
Eco72I CACGTG 1 cut(s) 724
Eco81I CCTNAGG 2 cut(s) 2121, 2297
Eco88I CYCGRG 1 cut(s) 1742
Eco91I GGTNACC 2 cut(s) 1970, 2125
EcoICRI GAGCTC 2 cut(s) 273, 2561
EcoNI CCTNNNNNAGG 1 cut(s) 3464
EcoO109I RGGNCCY 3 cut(s) 333, 444, 640
EcoO65I GGTNACC 2 cut(s) 1970, 2125
EcoRII CCWGG 3 cut(s) 515, 1635, 2472
EcoRV GATATC 1 cut(s) 143
EcoT14I CCWWGG 4 cut(s) 1147, 2352, 2554, 3460
EcoT22I ATGCAT 1 cut(s) 3274
EcoT38I GRGCYC 4 cut(s) 275, 959, 2563, 2820
ErhI CCWWGG 4 cut(s) 1147, 2352, 2554, 3460
FaqI GGGAC 8 cut(s) 264, 1288, 1346, 1852, 2414, 2818, 2858, 3065
FauNDI CATATG 1 cut(s) 3357
FbaI TGATCA 1 cut(s) 1171
FblI GTMKAC 3 cut(s) 1941, 2394, 3306
FriOI GRGCYC 4 cut(s) 275, 959, 2563, 2820
FspI TGCGCA 2 cut(s) 41, 1548
GlaI GCGC 5 cut(s) 41, 1548, 3036, 3038, 3471
GsuI CTGGAG 2 cut(s) 675, 2133
HapII CCGG 6 cut(s) 565, 1009, 1116, 1520, 2025, 2840
HgaI GACGC 2 cut(s) 266, 1838
HhaI GCGC 5 cut(s) 42, 1549, 3037, 3039, 3472
Hin6I GCGC 5 cut(s) 40, 1547, 3035, 3037, 3470
HinP1I GCGC 5 cut(s) 40, 1547, 3035, 3037, 3470
HincII GTYRAC 2 cut(s) 2395, 3307
HindII GTYRAC 2 cut(s) 2395, 3307
HindIII AAGCTT 2 cut(s) 3437, 3491
HpaII CCGG 6 cut(s) 565, 1009, 1116, 1520, 2025, 2840
HphI GGTGA 9 cut(s) 80, 952, 1497, 1580, 2191, 2369, 2519, 2558, 3509
Hpy166II GTNNAC 7 cut(s) 116, 1667, 1942, 2336, 2342, 2395, 3307
Hpy8I GTNNAC 7 cut(s) 116, 1667, 1942, 2336, 2342, 2395, 3307
Hpy99I CGWCG 2 cut(s) 2350, 2399
HpyCH4III ACNGT 9 cut(s) 211, 672, 1214, 1509, 1889, 1897, 2346, 2836, 3128
HpyCH4IV ACGT 3 cut(s) 723, 755, 2338
HpyF10VI GCNNNNNNNGC 9 cut(s) 48, 60, 529, 1025, 1525, 2279, 2288, 3516, 3525
HpySE526I ACGT 3 cut(s) 723, 755, 2338
HspAI GCGC 5 cut(s) 40, 1547, 3035, 3037, 3470
Ksp22I TGATCA 1 cut(s) 1171
KspI CCGCGG 1 cut(s) 441
LguI GCTCTTC 1 cut(s) 621
LmnI GCTCC 6 cut(s) 108, 650, 1141, 2236, 2558, 3103
LweI GCATC 8 cut(s) 1638, 1660, 1692, 2218, 2269, 2955, 3259, 3454
MaeII ACGT 3 cut(s) 723, 755, 2338
MaeIII GTNAC 8 cut(s) 68, 932, 1496, 1970, 2125, 2585, 2854, 3278
MbiI CCGCTC 2 cut(s) 532, 2773
MflI RGATCY 5 cut(s) 297, 1763, 3056, 3396, 3536
MhlI GDGCHC 6 cut(s) 275, 959, 2051, 2563, 2820, 3172
MlsI TGGCCA 2 cut(s) 1100, 2318
MluCI AATT 8 cut(s) 776, 1430, 1435, 1622, 2686, 3110, 3185, 3258
MluNI TGGCCA 2 cut(s) 1100, 2318
MlyI GAGTC 9 cut(s) 14, 238, 362, 574, 748, 1095, 1310, 2441, 2489
MmeI TCCRAC 4 cut(s) 221, 1741, 2537, 2779
Mox20I TGGCCA 2 cut(s) 1100, 2318
Mph1103I ATGCAT 1 cut(s) 3274
MscI TGGCCA 2 cut(s) 1100, 2318
MslI CAYNNNNRTG 2 cut(s) 1898, 2568
Msp20I TGGCCA 2 cut(s) 1100, 2318
MspA1I CMGCKG 4 cut(s) 167, 440, 1804, 2021
MspCI CTTAAG 3 cut(s) 230, 3010, 3299
MspI CCGG 6 cut(s) 565, 1009, 1116, 1520, 2025, 2840
MspR9I CCNGG 5 cut(s) 517, 1010, 1637, 2474, 2841
Mva1269I GAATGC 1 cut(s) 1397
MvaI CCWGG 3 cut(s) 517, 1637, 2474
MvnI CGCG 6 cut(s) 277, 440, 1084, 2313, 3037, 3472
MwoI GCNNNNNNNGC 9 cut(s) 48, 60, 529, 1025, 1525, 2279, 2288, 3516, 3525
NciI CCSGG 2 cut(s) 1010, 2841
NdeI CATATG 1 cut(s) 3357
NheI GCTAGC 1 cut(s) 1108
NlaIV GGNNCC 5 cut(s) 445, 1287, 1765, 3099, 3205
NmuCI GTSAC 2 cut(s) 68, 3278
NsbI TGCGCA 2 cut(s) 41, 1548
NsiI ATGCAT 1 cut(s) 3274
NspI RCATGY 3 cut(s) 1566, 2633, 3276
NspV TTCGAA 1 cut(s) 1269
PaeI GCATGC 1 cut(s) 3276
PagI TCATGA 3 cut(s) 391, 475, 1686
PauI GCGCGC 1 cut(s) 3035
PceI AGGCCT 2 cut(s) 1405, 2622
PciSI GCTCTTC 1 cut(s) 621
PctI GAATGC 1 cut(s) 1397
PflMI CCANNNNNTGG 1 cut(s) 3047
PleI GAGTC 9 cut(s) 13, 238, 362, 574, 747, 1094, 1309, 2440, 2488
PmaCI CACGTG 1 cut(s) 724
PmlI CACGTG 1 cut(s) 724
PpsI GAGTC 9 cut(s) 13, 238, 362, 574, 747, 1094, 1309, 2440, 2488
Ppu21I YACGTR 1 cut(s) 724
PsiI TTATAA 1 cut(s) 699
Psp124BI GAGCTC 2 cut(s) 275, 2563
Psp6I CCWGG 3 cut(s) 515, 1635, 2472
PspCI CACGTG 1 cut(s) 724
PspEI GGTNACC 2 cut(s) 1970, 2125
PspGI CCWGG 3 cut(s) 515, 1635, 2472
PspN4I GGNNCC 5 cut(s) 445, 1287, 1765, 3099, 3205
PspPI GGNCC 5 cut(s) 333, 444, 640, 2384, 2672
PstI CTGCAG 3 cut(s) 53, 550, 885
PstNI CAGNNNCTG 1 cut(s) 889
PsuI RGATCY 5 cut(s) 297, 1763, 3056, 3396, 3536
PteI GCGCGC 1 cut(s) 3035
PvuII CAGCTG 2 cut(s) 167, 2021
RsaI GTAC 8 cut(s) 542, 618, 1120, 1211, 1598, 2641, 2838, 3125
RsaNI GTAC 8 cut(s) 541, 617, 1119, 1210, 1597, 2640, 2837, 3124
RseI CAYNNNNRTG 2 cut(s) 1898, 2568
SacI GAGCTC 2 cut(s) 275, 2563
SacII CCGCGG 1 cut(s) 441
SalI GTCGAC 2 cut(s) 2393, 3305
SapI GCTCTTC 1 cut(s) 621
Sau96I GGNCC 5 cut(s) 333, 444, 640, 2384, 2672
ScaI AGTACT 1 cut(s) 1598
SchI GAGTC 9 cut(s) 14, 238, 362, 574, 748, 1095, 1310, 2441, 2489
ScrFI CCNGG 5 cut(s) 517, 1010, 1637, 2474, 2841
SduI GDGCHC 6 cut(s) 275, 959, 2051, 2563, 2820, 3172
SfaNI GCATC 8 cut(s) 1638, 1660, 1692, 2218, 2269, 2955, 3259, 3454
SfcI CTRYAG 6 cut(s) 49, 381, 546, 881, 1717, 2517
Sfr303I CCGCGG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 1269
SgrBI CCGCGG 1 cut(s) 441
SmiMI CAYNNNNRTG 2 cut(s) 1898, 2568
SmlI CTYRAG 5 cut(s) 230, 1783, 1976, 3010, 3299
SmoI CTYRAG 5 cut(s) 230, 1783, 1976, 3010, 3299
SpeI ACTAGT 2 cut(s) 1541, 1862
SphI GCATGC 1 cut(s) 3276
Sse9I AATT 8 cut(s) 776, 1430, 1435, 1622, 2686, 3110, 3185, 3258
SseBI AGGCCT 2 cut(s) 1405, 2622
SspI AATATT 1 cut(s) 808
SstI GAGCTC 2 cut(s) 275, 2563
StuI AGGCCT 2 cut(s) 1405, 2622
StyD4I CCNGG 5 cut(s) 515, 1008, 1635, 2472, 2839
StyI CCWWGG 4 cut(s) 1147, 2352, 2554, 3460
TaaI ACNGT 9 cut(s) 211, 672, 1214, 1509, 1889, 1897, 2346, 2836, 3128
TaiI ACGT 3 cut(s) 726, 758, 2341
TaqII GACCGA 1 cut(s) 2631
TasI AATT 8 cut(s) 776, 1430, 1435, 1622, 2686, 3110, 3185, 3258
TatI WGTACW 1 cut(s) 1596
TauI GCSGC 1 cut(s) 1084
TscAI CASTG 5 cut(s) 414, 555, 675, 1900, 3376
TseFI GTSAC 2 cut(s) 68, 3278
Tsp45I GTSAC 2 cut(s) 68, 3278
TspDTI ATGAA 7 cut(s) 380, 464, 890, 1036, 2339, 2865, 3301
TspGWI ACGGA 3 cut(s) 914, 981, 3196
TspRI CASTG 5 cut(s) 414, 555, 675, 1900, 3376
Van91I CCANNNNNTGG 1 cut(s) 3047
Vha464I CTTAAG 3 cut(s) 230, 3010, 3299
XagI CCTNNNNNAGG 1 cut(s) 3464
XapI RAATTY 3 cut(s) 776, 1430, 3110
XbaI TCTAGA 1 cut(s) 1913
XceI RCATGY 3 cut(s) 1566, 2633, 3276
XmaJI CCTAGG 1 cut(s) 3460
XmiI GTMKAC 3 cut(s) 1941, 2394, 3306
ZrmI AGTACT 1 cut(s) 1598
Zsp2I ATGCAT 1 cut(s) 3274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.