Rroxscaffold_4G00332580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000153
Physical Location & Seq
Reverse (-)
66770441 .. 66772109
1669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00332580.1

Sequence Viewer

Length: 645 bp
ATGGGTTTCATATCTAGACTTAACCTTCCATATACCGAGGTATACTCGAATGGCATAGAACGTGTGGTTGGTCATCTTAAAGGTGGGGATGATTTAGAGCGGAGCTCTCGCGTTGCTAACATGAGTTTTTCTAAACCTAAACCGTCGTCTAAGGGCGCTGCTCATATTGATCTTAATGACACGCCAAGTGACAACATCGAAGGTAGCCACCCCTTAGTGATAATGAGGAAAATGAATTTGATACTTATGAGGGAGAGACTTGCGATGACGGTAGTTAGGCGGAATCCCTTGGAGATGAGGATGATCGATGAGTTTATATGCTTGGGAATTCTATGTAGCCGGTGCTCGTGCTCGATGAAGGAATCTGCTGCAAATGTCGGTCCTTGTGCGATAATCGTAACAAGCGGGTGTGCAAAGTTGGACGTTGGTATCGTTGACTCGGTGAAAGAATCTTCTGCGTACGATAGTCTTTGCGAGGATGACCATAATGAGCGGGGTGGATCATTTTTGTTGACAGTTGGAGGGGCATCATTTGAGCCCCATCTCCCCGAGACAAAGACCGGGGATGAAGGCGTTACTACCGCAATCTTGGAAAGTATAGGGGTTCCGCCGTGCGTTGCCTCCGCTTGTTCTCTTGCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

22.93

Weight (kDa)

5.4

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 100, 493
AccI GTMKAC 1 cut(s) 42
AccII CGCG 1 cut(s) 111
AciI CCGC 7 cut(s) 100, 280, 405, 493, 582, 608, 624
AclWI GGATC 1 cut(s) 508
AcsI RAATTY 2 cut(s) 235, 327
AfaI GTAC 1 cut(s) 461
AflIII ACRYGT 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
Alw21I GWGCWC 3 cut(s) 107, 347, 353
Alw26I GTCTC 2 cut(s) 250, 545
AlwI GGATC 1 cut(s) 508
Ama87I CYCGRG 1 cut(s) 548
ApeKI GCWGC 2 cut(s) 158, 368
ApoI RAATTY 2 cut(s) 235, 327
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 380
AsuC2I CCSGG 1 cut(s) 562
AsuHPI GGTGA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 1 cut(s) 380
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
BanII GRGCYC 2 cut(s) 107, 540
BauI CACGAG 1 cut(s) 346
Bbv12I GWGCWC 3 cut(s) 107, 347, 353
BbvI GCAGC 2 cut(s) 145, 355
BccI CCATC 1 cut(s) 549
BceAI ACGGC 1 cut(s) 595
BcnI CCSGG 1 cut(s) 562
BcoDI GTCTC 2 cut(s) 250, 545
BfaI CTAG 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 2 cut(s) 159, 369
BlsI GCNGC 2 cut(s) 160, 370
Bme1390I CCNGG 1 cut(s) 562
Bme18I GGWCC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 548
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 606
BmrFI CCNGG 1 cut(s) 562
BmsI GCATC 1 cut(s) 536
BplI GAGNNNNNCTC 4 cut(s) 29, 61, 89, 121
BpuMI CCSGG 1 cut(s) 562
Bsa29I ATCGAT 1 cut(s) 306
BsaJI CCNNGG 3 cut(s) 36, 288, 561
Bse118I RCCGGY 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 36, 288, 561
BseGI GGATG 4 cut(s) 94, 306, 484, 571
BseXI GCAGC 2 cut(s) 145, 355
Bsh1236I CGCG 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 306
BsiHKAI GWGCWC 3 cut(s) 107, 347, 353
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 2 cut(s) 340, 561
BsiWI CGTACG 1 cut(s) 459
BsmAI GTCTC 2 cut(s) 250, 545
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 4 cut(s) 107, 347, 353, 540
Bsp143I GATC 3 cut(s) 169, 303, 500
BspACI CCGC 7 cut(s) 100, 280, 405, 493, 582, 608, 624
BspDI ATCGAT 1 cut(s) 306
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 606
BspPI GGATC 1 cut(s) 508
BsrBI CCGCTC 2 cut(s) 100, 493
BsrFI RCCGGY 1 cut(s) 339
BssAI RCCGGY 1 cut(s) 339
BssECI CCNNGG 3 cut(s) 36, 288, 561
BssMI GATC 3 cut(s) 169, 303, 500
BssNAI GTATAC 1 cut(s) 43
BssSI CACGAG 1 cut(s) 346
BssT1I CCWWGG 1 cut(s) 288
Bst1107I GTATAC 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 346
Bst4CI ACNGT 3 cut(s) 144, 271, 517
BstDEI CTNAG 2 cut(s) 150, 214
BstF5I GGATG 4 cut(s) 94, 306, 484, 571
BstFNI CGCG 1 cut(s) 111
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstKTI GATC 3 cut(s) 172, 306, 503
BstMAI GTCTC 2 cut(s) 250, 545
BstMBI GATC 3 cut(s) 169, 303, 500
BstSCI CCNGG 1 cut(s) 560
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 145, 355
BstZ17I GTATAC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 306
BsuTUI ATCGAT 1 cut(s) 306
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 4 cut(s) 94, 306, 484, 571
CfoI GCGC 1 cut(s) 158
Cfr10I RCCGGY 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 380
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 1 cut(s) 460
CviAII CATG 1 cut(s) 121
CviJI RGCY 4 cut(s) 105, 207, 339, 538
CviKI_1 RGCY 4 cut(s) 105, 207, 339, 538
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 2 cut(s) 150, 214
DpnI GATC 3 cut(s) 171, 305, 502
DpnII GATC 3 cut(s) 169, 303, 500
EciI GGCGGA 2 cut(s) 295, 597
Ecl136II GAGCTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 2 cut(s) 107, 540
Eco47I GGWCC 1 cut(s) 380
Eco53kI GAGCTC 1 cut(s) 105
Eco88I CYCGRG 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 105
EcoRI GAATTC 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 2 cut(s) 107, 540
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 1 cut(s) 124
FatI CATG 1 cut(s) 120
FauI CCCGC 2 cut(s) 398, 486
FblI GTMKAC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 159, 369
FokI GGATG 4 cut(s) 101, 313, 491, 578
FriOI GRGCYC 2 cut(s) 107, 540
Fsp4HI GCNGC 2 cut(s) 159, 369
FspBI CTAG 1 cut(s) 15
GlaI GCGC 1 cut(s) 157
GluI GCNGC 2 cut(s) 159, 369
HaeII RGCGCY 1 cut(s) 159
HapII CCGG 2 cut(s) 340, 561
HhaI GCGC 1 cut(s) 158
Hin1II CATG 1 cut(s) 124
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HincII GTYRAC 2 cut(s) 436, 513
HindII GTYRAC 2 cut(s) 436, 513
HinfI GANTC 4 cut(s) 283, 362, 437, 449
HpaII CCGG 2 cut(s) 340, 561
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 3 cut(s) 43, 436, 513
Hpy188III TCNNGA 1 cut(s) 15
Hpy8I GTNNAC 3 cut(s) 43, 436, 513
Hpy99I CGWCG 1 cut(s) 148
HpyAV CCTTC 4 cut(s) 35, 194, 352, 563
HpyCH4III ACNGT 3 cut(s) 144, 271, 517
HpyCH4IV ACGT 2 cut(s) 61, 423
HpyCH4V TGCA 2 cut(s) 371, 413
HpyF3I CTNAG 2 cut(s) 150, 214
HpySE526I ACGT 2 cut(s) 61, 423
Hsp92II CATG 1 cut(s) 124
HspAI GCGC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 169, 303, 500
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 353, 574
Lsp1109I GCAGC 2 cut(s) 145, 355
LweI GCATC 1 cut(s) 536
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 61, 423
MaeIII GTNAC 3 cut(s) 188, 397, 574
MalI GATC 3 cut(s) 171, 305, 502
MbiI CCGCTC 2 cut(s) 100, 493
MboI GATC 3 cut(s) 169, 303, 500
MboII GAAGA 1 cut(s) 444
MhlI GDGCHC 4 cut(s) 107, 347, 353, 540
MluCI AATT 2 cut(s) 235, 327
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 2 cut(s) 399, 499
MnlI CCTC 7 cut(s) 31, 219, 243, 291, 469, 515, 631
MseI TTAA 3 cut(s) 21, 78, 174
MspI CCGG 2 cut(s) 340, 561
MspR9I CCNGG 1 cut(s) 562
MvnI CGCG 1 cut(s) 111
NciI CCSGG 1 cut(s) 562
NdeII GATC 3 cut(s) 169, 303, 500
NlaIII CATG 1 cut(s) 124
NlaIV GGNNCC 1 cut(s) 606
NmuCI GTSAC 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 3 cut(s) 283, 362, 449
Pfl23II CGTACG 1 cut(s) 459
PkrI GCNGC 2 cut(s) 160, 370
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Psp124BI GAGCTC 1 cut(s) 107
PspLI CGTACG 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 606
PspPI GGNCC 1 cut(s) 380
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SacI GAGCTC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 21, 78, 174
SatI GCNGC 2 cut(s) 159, 369
Sau3AI GATC 3 cut(s) 169, 303, 500
Sau96I GGNCC 1 cut(s) 380
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 562
SduI GDGCHC 4 cut(s) 107, 347, 353, 540
SetI ASST 8 cut(s) 27, 42, 64, 85, 107, 139, 205, 426
SfaNI GCATC 1 cut(s) 536
SinI GGWCC 1 cut(s) 380
Sse9I AATT 2 cut(s) 235, 327
SsiI CCGC 7 cut(s) 100, 280, 405, 493, 582, 608, 624
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 107
StyD4I CCNGG 1 cut(s) 560
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 3 cut(s) 144, 271, 517
TaiI ACGT 2 cut(s) 64, 426
TaqI TCGA 4 cut(s) 47, 198, 306, 353
TaqII GACCGA 1 cut(s) 368
TasI AATT 2 cut(s) 235, 327
TfiI GAWTC 3 cut(s) 283, 362, 449
Tru1I TTAA 3 cut(s) 21, 78, 174
Tru9I TTAA 3 cut(s) 21, 78, 174
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 158, 368
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 248, 371, 582
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 2 cut(s) 235, 327
XbaI TCTAGA 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 42
XspI CTAG 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.