Rmu_sc0005039.1_g000012

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005039.1
OG0000153
Physical Location & Seq
Reverse (-)
49826 .. 54984
5159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005039.1_g000012.1.cds

Sequence Viewer

Length: 2256 bp
atgcgataccaggttacaggtgcgattgcctattgctggtttcccataaactttgagtatccctgtggtttagttacgggatggccacaatgggttgactatgaactaggagatgaggctgcaagaatcagactttcagaagctgctgttctttcttccgtattcatctctgctcgttgtgatatcaacagggatgtggagtctctccgtcatgtagttcgaaggtggaatcctcatacacatacctttgtttgcgagtggggagagtttacccctaccttggaggatgtcttgaacattatgaggcttcccattactggttccgtcaatcctcttggctttgattttgactcagaaaagttgcaagttcttatagaaggggcttccagtattaaaggaagtaagcgccgtttctcgaattgggacgttccctcacctccacctcgctctcttaactctaagatcacaagcttttctcatatggagcgcagatgcgtacttgacttttctagcagaattgcagacttcccatcccagctgccagggaatgtcgcgaatgctaacgcctcccctgcttatagttgttattggaggggagtgttgtgcaggttcaggctttttgtggaagccggtggtcctcagctacagttgggacctattaccagcagcagattggctagccccaaggctgttctgacttataccgaagtgtacagtgatggcaccagaaaggttgtcggctatttgaagggttttgaagctaagagggtgaagggagagggaaagaagtgcgataagaaaataggtgataaaggtgatgcaagggagcatgacactcagaagcctgttcggcgtttcaagcccaaggtgaattttgacaagtttatgcatacgacccaacacggagtcaaactgatgatccccccaagcatgccgcttcaaaataacaaggaagtcaagaagaaaaggtcttcaacaccccgagcaggtggtacctcccaaacaaagcaagtgaatgctaccaatttcgaagtgaagaaaaggatgaagagggaggttggtgtagattttgacgtccctcttcgtcgaagcaaccgtgtgaaatccaagagttcccctttgcctcgtggtcctccagcttatattgagttatctgattctgatggagggggttctcaagggggtccagctgattcttctaaagaagttcatgctactccttcaaaaggggcttccgatcatctgcctgaagtgcttcccatggttagccaagatagtgacaaccaggttaacgaagatgaaggcatgagtgatggtgataaggccgtcacagatgatggcacgagcgatggtgacaagatgaccgaagatgaaggcatgagtgatggtgacaaggtggccgaagatgaaggcacgagtgataagcaagccttgaaaaacggcggtgtgagcaatggcaatcaggagcaggggcatccttcagaagttgataagagtactgacggggttggtcatgacacggtggtacacgccttagtcgagtctgataagcacattccaggatttggtaaggtgactgtcattcaaactcaaagtcttggcccaagcttgcctgccaaagggtcaactagtgagtgggcgacctatatggacaatttcatgattcgatttgcttctaaagaggagtccgctttaagcatggctgatgttacaccagtgttgagtggagacatcgctgtttttgctggtatgaaaattccttcagagttggtgagtcccttgactagatttgctgagagatatagcggtggagatatctttagtttgattgatcgagattatacttcaaggaagaagtgcgagttgattaaggaacttggcatgatgttgttcagcatggaagtctgccagataaaagatggagaagtattcctcatttggagagacacctgtcgtgatttcatgggggcaggtcttaacattggcttcatgttagattccttaaaacaaggtgcaaagaatttctttggttatatgatgaggtctaaaggatcagagaaccagtatgttaaagttcaaggcctgcaggagatggtttcgcaaaccaagaaggagcttgcacgtcttgagggagagttgcgtaaggctcaagatgatctgagttccagtctgcgtgacatttctgttcctgccatggagtgcgtactagaatcttcttggaaggatggtagttgcttttcttattatttgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

751

Amino Acids

83.1

Weight (kDa)

6.41

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 977
AatII GACGTC 1 cut(s) 1077
Acc36I ACCTGC 3 cut(s) 597, 977, 1961
Acc65I GGTACC 1 cut(s) 992
AccB1I GGYRCC 2 cut(s) 722, 992
AccB7I CCANNNNNTGG 1 cut(s) 1565
AccII CGCG 1 cut(s) 554
AciI CCGC 4 cut(s) 935, 1443, 1689, 1806
AclWI GGATC 2 cut(s) 913, 2059
AcoI YGGCCR 2 cut(s) 83, 1398
AcsI RAATTY 3 cut(s) 871, 1755, 2020
AcuI CTGAAG 3 cut(s) 1269, 1464, 1746
AcyI GRCGYC 1 cut(s) 1074
AfaI GTAC 6 cut(s) 498, 713, 994, 1498, 1527, 2205
AfiI CCNNNNNNNGG 7 cut(s) 36, 280, 317, 986, 1226, 1565, 1619
AhlI ACTAGT 1 cut(s) 1628
AjiI CACGTC 1 cut(s) 2123
AjnI CCWGG 4 cut(s) 9, 541, 1284, 1558
AluBI AGCT 9 cut(s) 143, 471, 538, 643, 761, 1139, 1190, 1608, 2116
AluI AGCT 9 cut(s) 143, 471, 538, 643, 761, 1139, 1190, 1608, 2116
Alw26I GTCTC 3 cut(s) 207, 1722, 1938
AlwI GGATC 2 cut(s) 913, 2059
AlwNI CAGNNNCTG 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 981
AoxI GGCC 5 cut(s) 83, 1323, 1398, 1600, 2080
ApeKI GCWGC 4 cut(s) 119, 143, 538, 666
ApoI RAATTY 3 cut(s) 871, 1755, 2020
ArsI GACNNNNNNTTYG 2 cut(s) 1579, 1611
Asp700I GAANNNNTTC 1 cut(s) 1254
Asp718I GGTACC 1 cut(s) 992
AspLEI GCGC 2 cut(s) 408, 489
AspS9I GGNCC 5 cut(s) 635, 653, 1130, 1184, 1601
AsuII TTCGAA 2 cut(s) 220, 1029
AsuNHI GCTAGC 1 cut(s) 677
AvaI CYCGRG 1 cut(s) 981
AvaII GGWCC 4 cut(s) 635, 653, 1130, 1184
BalI TGGCCA 1 cut(s) 85
BanI GGYRCC 2 cut(s) 722, 992
BauI CACGAG 3 cut(s) 1125, 1342, 1414
BbsI GAAGAC 1 cut(s) 963
BbvCI CCTCAGC 1 cut(s) 639
BbvI GCAGC 4 cut(s) 106, 130, 525, 678
BceAI ACGGC 3 cut(s) 393, 1310, 1456
BciT130I CCWGG 4 cut(s) 11, 543, 1286, 1560
BciVI GTATCC 1 cut(s) 69
BcoDI GTCTC 3 cut(s) 207, 1722, 1938
BcuI ACTAGT 1 cut(s) 1628
BfaI CTAG 6 cut(s) 107, 510, 678, 1629, 1785, 2207
BfmI CTRYAG 2 cut(s) 644, 2084
BfoI RGCGCY 1 cut(s) 409
BfuAI ACCTGC 3 cut(s) 597, 977, 1961
BfuI GTATCC 1 cut(s) 69
BglI GCCNNNNNGGC 1 cut(s) 850
BisI GCNGC 5 cut(s) 120, 144, 539, 667, 935
BlsI GCNGC 5 cut(s) 121, 145, 540, 668, 936
BmcAI AGTACT 1 cut(s) 1498
Bme1390I CCNGG 4 cut(s) 11, 543, 1286, 1560
Bme18I GGWCC 4 cut(s) 635, 653, 1130, 1184
BmeT110I CYCGRG 1 cut(s) 981
BmgBI CACGTC 1 cut(s) 2123
BmgT120I GGNCC 5 cut(s) 635, 653, 1130, 1184, 1601
BmiI GGNNCC 5 cut(s) 322, 654, 724, 994, 1185
BmrFI CCNGG 4 cut(s) 11, 543, 1286, 1560
BmsI GCATC 3 cut(s) 482, 808, 1483
BmtI GCTAGC 1 cut(s) 681
BoxI GACNNNNGTC 1 cut(s) 1950
BpiI GAAGAC 1 cut(s) 963
BpmI CTGGAG 1 cut(s) 1119
Bpu10I CCTNAGC 1 cut(s) 639
Bpu14I TTCGAA 2 cut(s) 220, 1029
BpuEI CTTGAG 3 cut(s) 1161, 2133, 2147
BsaHI GRCGYC 1 cut(s) 1074
BsaJI CCNNGG 6 cut(s) 279, 542, 684, 864, 1260, 2193
Bsc4I CCNNNNNNNGG 7 cut(s) 36, 280, 317, 986, 1226, 1565, 1619
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 5 cut(s) 322, 387, 1715, 2062, 2166
Bse3DI GCAATG 1 cut(s) 1459
BseBI CCWGG 4 cut(s) 11, 543, 1286, 1560
BseDI CCNNGG 6 cut(s) 279, 542, 684, 864, 1260, 2193
BseGI GGATG 7 cut(s) 86, 199, 292, 530, 1050, 1474, 2230
BseLI CCNNNNNNNGG 7 cut(s) 36, 280, 317, 986, 1226, 1565, 1619
BseMI GCAATG 1 cut(s) 1459
BseMII CTCAG 5 cut(s) 366, 653, 851, 1785, 2150
BseNI ACTGG 5 cut(s) 322, 387, 1715, 2062, 2166
BseRI GAGGAG 1 cut(s) 1697
BseXI GCAGC 4 cut(s) 106, 130, 525, 678
BseYI CCCAGC 1 cut(s) 534
BsgI GTGCAG 1 cut(s) 625
Bsh1236I CGCG 1 cut(s) 554
BshFI GGCC 5 cut(s) 85, 1325, 1400, 1602, 2082
BshNI GGYRCC 2 cut(s) 722, 992
BsiHKCI CYCGRG 1 cut(s) 981
BsiSI CCGG 1 cut(s) 630
BslFI GGGAC 4 cut(s) 437, 666, 1061, 1761
BslI CCNNNNNNNGG 7 cut(s) 36, 280, 317, 986, 1226, 1565, 1619
BsmAI GTCTC 3 cut(s) 207, 1722, 1938
BsmFI GGGAC 4 cut(s) 437, 666, 1061, 1761
BsmI GAATGC 2 cut(s) 562, 1021
BsnI GGCC 5 cut(s) 85, 1325, 1400, 1602, 2082
BsoBI CYCGRG 1 cut(s) 981
Bsp119I TTCGAA 2 cut(s) 220, 1029
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
Bsp19I CCATGG 2 cut(s) 1260, 2193
Bsp68I TCGCGA 1 cut(s) 554
BspACI CCGC 4 cut(s) 935, 1443, 1689, 1806
BspANI GGCC 5 cut(s) 85, 1325, 1400, 1602, 2082
BspCNI CTCAG 5 cut(s) 365, 652, 850, 1786, 2151
BspFNI CGCG 1 cut(s) 554
BspHI TCATGA 2 cut(s) 1513, 1659
BspLI GGNNCC 5 cut(s) 322, 654, 724, 994, 1185
BspMAI CTGCAG 1 cut(s) 2088
BspMI ACCTGC 3 cut(s) 597, 977, 1961
BspOI GCTAGC 1 cut(s) 681
BspPI GGATC 2 cut(s) 913, 2059
BspT104I TTCGAA 2 cut(s) 220, 1029
BspT107I GGYRCC 2 cut(s) 722, 992
BsrDI GCAATG 1 cut(s) 1459
BsrFI RCCGGY 1 cut(s) 629
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 5 cut(s) 322, 387, 1715, 2062, 2166
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 6 cut(s) 279, 542, 684, 864, 1260, 2193
BssMI GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
BssNI GRCGYC 1 cut(s) 1074
BssSI CACGAG 3 cut(s) 1125, 1342, 1414
BssT1I CCWWGG 5 cut(s) 279, 684, 864, 1260, 2193
Bst2BI CACGAG 3 cut(s) 1125, 1342, 1414
Bst2UI CCWGG 4 cut(s) 11, 543, 1286, 1560
Bst4CI ACNGT 5 cut(s) 648, 716, 1097, 1522, 1579
Bst6I CTCTTC 2 cut(s) 1043, 1086
BstACI GRCGYC 1 cut(s) 1074
BstAUI TGTACA 1 cut(s) 711
BstBI TTCGAA 2 cut(s) 220, 1029
BstC8I GCNNGC 7 cut(s) 679, 932, 1428, 1610, 1614, 2084, 2118
BstDEI CTNAG 8 cut(s) 352, 459, 639, 762, 837, 1534, 1794, 2159
BstDSI CCRYGG 2 cut(s) 1260, 2193
BstENI CCTNNNNNAGG 2 cut(s) 1224, 1617
BstF5I GGATG 7 cut(s) 86, 199, 292, 530, 1050, 1474, 2230
BstFNI CGCG 1 cut(s) 554
BstH2I RGCGCY 1 cut(s) 409
BstHHI GCGC 2 cut(s) 408, 489
BstKTI GATC 6 cut(s) 465, 921, 1240, 1834, 2054, 2158
BstMAI GTCTC 3 cut(s) 207, 1722, 1938
BstMBI GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
BstMWI GCNNNNNNNGC 6 cut(s) 572, 850, 859, 1252, 1449, 1742
BstNI CCWGG 4 cut(s) 11, 543, 1286, 1560
BstNSI RCATGY 1 cut(s) 934
BstPAI GACNNNNGTC 1 cut(s) 1950
BstSCI CCNGG 4 cut(s) 9, 541, 1284, 1558
BstSFI CTRYAG 2 cut(s) 644, 2084
BstUI CGCG 1 cut(s) 554
BstV1I GCAGC 4 cut(s) 106, 130, 525, 678
BstV2I GAAGAC 1 cut(s) 963
BsuI GTATCC 1 cut(s) 69
BsuRI GGCC 5 cut(s) 85, 1325, 1400, 1602, 2082
BtgI CCRYGG 2 cut(s) 1260, 2193
BtgZI GCGATG 2 cut(s) 1362, 1717
BtrI CACGTC 1 cut(s) 2123
BtsCI GGATG 7 cut(s) 86, 199, 292, 530, 1050, 1474, 2230
BtsIMutI CAGTG 2 cut(s) 721, 1722
BtuMI TCGCGA 1 cut(s) 554
BveI ACCTGC 3 cut(s) 597, 977, 1961
Cac8I GCNNGC 7 cut(s) 679, 932, 1428, 1610, 1614, 2084, 2118
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 2 cut(s) 1513, 1659
CfoI GCGC 2 cut(s) 408, 489
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 5 cut(s) 635, 653, 1130, 1184, 1601
CsiI ACCWGGT 2 cut(s) 9, 1284
Csp6I GTAC 6 cut(s) 497, 712, 993, 1497, 1526, 2204
CviQI GTAC 6 cut(s) 497, 712, 993, 1497, 1526, 2204
DdeI CTNAG 8 cut(s) 352, 459, 639, 762, 837, 1534, 1794, 2159
DpnI GATC 6 cut(s) 464, 920, 1239, 1833, 2053, 2157
DpnII GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
EaeI YGGCCR 2 cut(s) 83, 1398
Eam1104I CTCTTC 2 cut(s) 1043, 1086
EarI CTCTTC 2 cut(s) 1043, 1086
Eco130I CCWWGG 5 cut(s) 279, 684, 864, 1260, 2193
Eco147I AGGCCT 1 cut(s) 2082
Eco32I GATATC 2 cut(s) 184, 1816
Eco47I GGWCC 4 cut(s) 635, 653, 1130, 1184
Eco57I CTGAAG 3 cut(s) 1269, 1464, 1746
Eco88I CYCGRG 1 cut(s) 981
EcoNI CCTNNNNNAGG 2 cut(s) 1224, 1617
EcoO109I RGGNCCY 1 cut(s) 653
EcoRII CCWGG 4 cut(s) 9, 541, 1284, 1558
EcoRV GATATC 2 cut(s) 184, 1816
EcoT14I CCWWGG 5 cut(s) 279, 684, 864, 1260, 2193
EcoT22I ATGCAT 1 cut(s) 891
ErhI CCWWGG 5 cut(s) 279, 684, 864, 1260, 2193
FalI AAGNNNNNCTT 4 cut(s) 1415, 1447, 2009, 2041
FaqI GGGAC 4 cut(s) 437, 666, 1061, 1761
FauNDI CATATG 1 cut(s) 480
Fnu4HI GCNGC 5 cut(s) 120, 144, 539, 667, 935
FokI GGATG 7 cut(s) 93, 206, 299, 517, 1057, 1461, 2237
Fsp4HI GCNGC 5 cut(s) 120, 144, 539, 667, 935
FspBI CTAG 6 cut(s) 107, 510, 678, 1629, 1785, 2207
GlaI GCGC 2 cut(s) 407, 488
GluI GCNGC 5 cut(s) 120, 144, 539, 667, 935
GsaI CCCAGC 1 cut(s) 538
GsuI CTGGAG 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 409
HaeIII GGCC 5 cut(s) 85, 1325, 1400, 1602, 2082
HapII CCGG 1 cut(s) 630
HhaI GCGC 2 cut(s) 408, 489
Hin1I GRCGYC 1 cut(s) 1074
Hin6I GCGC 2 cut(s) 406, 487
HinP1I GCGC 2 cut(s) 406, 487
HincII GTYRAC 3 cut(s) 97, 1291, 1626
HindII GTYRAC 3 cut(s) 97, 1291, 1626
HindIII AAGCTT 2 cut(s) 469, 1606
HpaI GTTAAC 1 cut(s) 1291
HpaII CCGG 1 cut(s) 630
Hpy166II GTNNAC 6 cut(s) 97, 270, 712, 1291, 1528, 1626
Hpy8I GTNNAC 6 cut(s) 97, 270, 712, 1291, 1528, 1626
Hpy99I CGWCG 1 cut(s) 1089
HpyCH4III ACNGT 5 cut(s) 648, 716, 1097, 1522, 1579
HpyCH4IV ACGT 3 cut(s) 426, 1074, 2122
HpyCH4V TGCA 9 cut(s) 122, 364, 521, 606, 821, 889, 2015, 2086, 2120
HpyF10VI GCNNNNNNNGC 6 cut(s) 572, 850, 859, 1252, 1449, 1742
HpyF3I CTNAG 8 cut(s) 352, 459, 639, 762, 837, 1534, 1794, 2159
HpySE526I ACGT 3 cut(s) 426, 1074, 2122
Hsp92I GRCGYC 1 cut(s) 1074
HspAI GCGC 2 cut(s) 406, 487
KpnI GGTACC 1 cut(s) 996
KspAI GTTAAC 1 cut(s) 1291
Kzo9I GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
LmnI GCTCC 4 cut(s) 484, 826, 1465, 2113
Lsp1109I GCAGC 4 cut(s) 106, 130, 525, 678
LweI GCATC 3 cut(s) 482, 808, 1483
MabI ACCWGGT 2 cut(s) 9, 1284
MaeI CTAG 6 cut(s) 107, 510, 678, 1629, 1785, 2207
MaeII ACGT 3 cut(s) 426, 1074, 2122
MaeIII GTNAC 9 cut(s) 13, 73, 1277, 1327, 1352, 1388, 1573, 1708, 2174
MalI GATC 6 cut(s) 464, 920, 1239, 1833, 2053, 2157
MboI GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
MlsI TGGCCA 1 cut(s) 85
MluCI AATT 7 cut(s) 418, 516, 871, 1024, 1654, 1755, 2020
MluNI TGGCCA 1 cut(s) 85
MlyI GAGTC 6 cut(s) 209, 344, 915, 1550, 1694, 1783
Mox20I TGGCCA 1 cut(s) 85
Mph1103I ATGCAT 1 cut(s) 891
MroXI GAANNNNTTC 1 cut(s) 1254
MscI TGGCCA 1 cut(s) 85
MseI TTAA 8 cut(s) 393, 453, 1290, 1694, 1869, 1977, 2003, 2070
Msp20I TGGCCA 1 cut(s) 85
MspA1I CMGCKG 2 cut(s) 538, 1190
MspI CCGG 1 cut(s) 630
MspR9I CCNGG 4 cut(s) 11, 543, 1286, 1560
Mva1269I GAATGC 2 cut(s) 562, 1021
MvaI CCWGG 4 cut(s) 11, 543, 1286, 1560
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 6 cut(s) 572, 850, 859, 1252, 1449, 1742
NcoI CCATGG 2 cut(s) 1260, 2193
NdeI CATATG 1 cut(s) 480
NdeII GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
NheI GCTAGC 1 cut(s) 677
NlaIV GGNNCC 5 cut(s) 322, 654, 724, 994, 1185
NmuCI GTSAC 6 cut(s) 1277, 1327, 1352, 1388, 1573, 2174
NruI TCGCGA 1 cut(s) 554
NsiI ATGCAT 1 cut(s) 891
NspI RCATGY 1 cut(s) 934
NspV TTCGAA 2 cut(s) 220, 1029
PaeI GCATGC 1 cut(s) 934
PagI TCATGA 2 cut(s) 1513, 1659
PaqCI CACCTGC 1 cut(s) 977
PceI AGGCCT 1 cut(s) 2082
PcsI WCGNNNNNNNCGW 2 cut(s) 1093, 1536
PctI GAATGC 2 cut(s) 562, 1021
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 7 cut(s) 126, 229, 1157, 1193, 1663, 1997, 2210
PflMI CCANNNNNTGG 1 cut(s) 1565
PfoI TCCNGGA 1 cut(s) 1558
PkrI GCNGC 5 cut(s) 121, 145, 540, 668, 936
PleI GAGTC 6 cut(s) 208, 344, 914, 1549, 1693, 1782
PpsI GAGTC 6 cut(s) 208, 344, 914, 1549, 1693, 1782
PpuMI RGGWCCY 1 cut(s) 653
PshAI GACNNNNGTC 1 cut(s) 1950
Psp5II RGGWCCY 1 cut(s) 653
Psp6I CCWGG 4 cut(s) 9, 541, 1284, 1558
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 4 cut(s) 9, 541, 1284, 1558
PspN4I GGNNCC 5 cut(s) 322, 654, 724, 994, 1185
PspPI GGNCC 5 cut(s) 635, 653, 1130, 1184, 1601
PspPPI RGGWCCY 1 cut(s) 653
PstI CTGCAG 1 cut(s) 2088
PstNI CAGNNNCTG 1 cut(s) 143
PvuII CAGCTG 2 cut(s) 538, 1190
RruI TCGCGA 1 cut(s) 554
RsaI GTAC 6 cut(s) 498, 713, 994, 1498, 1527, 2205
RsaNI GTAC 6 cut(s) 497, 712, 993, 1497, 1526, 2204
SaqAI TTAA 8 cut(s) 393, 453, 1290, 1694, 1869, 1977, 2003, 2070
SatI GCNGC 5 cut(s) 120, 144, 539, 667, 935
Sau3AI GATC 6 cut(s) 462, 918, 1237, 1831, 2051, 2155
Sau96I GGNCC 5 cut(s) 635, 653, 1130, 1184, 1601
SbfI CCTGCAGG 1 cut(s) 2088
ScaI AGTACT 1 cut(s) 1498
SchI GAGTC 6 cut(s) 209, 344, 915, 1550, 1694, 1783
ScrFI CCNGG 4 cut(s) 11, 543, 1286, 1560
SdaI CCTGCAGG 1 cut(s) 2088
SexAI ACCWGGT 2 cut(s) 9, 1284
SfaNI GCATC 3 cut(s) 482, 808, 1483
SfcI CTRYAG 2 cut(s) 644, 2084
SfuI TTCGAA 2 cut(s) 220, 1029
SinI GGWCC 4 cut(s) 635, 653, 1130, 1184
SmlI CTYRAG 3 cut(s) 1176, 2126, 2148
SmoI CTYRAG 3 cut(s) 1176, 2126, 2148
SpeI ACTAGT 1 cut(s) 1628
SphI GCATGC 1 cut(s) 934
Sse8387I CCTGCAGG 1 cut(s) 2088
Sse9I AATT 7 cut(s) 418, 516, 871, 1024, 1654, 1755, 2020
SseBI AGGCCT 1 cut(s) 2082
SsiI CCGC 4 cut(s) 935, 1443, 1689, 1806
SspMI CTAG 6 cut(s) 107, 510, 678, 1629, 1785, 2207
StuI AGGCCT 1 cut(s) 2082
StyD4I CCNGG 4 cut(s) 9, 541, 1284, 1558
StyI CCWWGG 5 cut(s) 279, 684, 864, 1260, 2193
TaaI ACNGT 5 cut(s) 648, 716, 1097, 1522, 1579
TaiI ACGT 3 cut(s) 429, 1077, 2125
TaqI TCGA 7 cut(s) 220, 416, 1029, 1087, 1539, 1666, 1834
TaqII GACCGA 1 cut(s) 1379
TasI AATT 7 cut(s) 418, 516, 871, 1024, 1654, 1755, 2020
TatI WGTACW 2 cut(s) 711, 1496
TauI GCSGC 1 cut(s) 937
TfiI GAWTC 7 cut(s) 126, 229, 1157, 1193, 1663, 1997, 2210
Tru1I TTAA 8 cut(s) 393, 453, 1290, 1694, 1869, 1977, 2003, 2070
Tru9I TTAA 8 cut(s) 393, 453, 1290, 1694, 1869, 1977, 2003, 2070
TscAI CASTG 2 cut(s) 721, 1722
TseFI GTSAC 6 cut(s) 1277, 1327, 1352, 1388, 1573, 2174
TseI GCWGC 4 cut(s) 119, 143, 538, 666
Tsp45I GTSAC 6 cut(s) 1277, 1327, 1352, 1388, 1573, 2174
TspGWI ACGGA 4 cut(s) 148, 197, 313, 918
TspRI CASTG 2 cut(s) 721, 1722
Van91I CCANNNNNTGG 1 cut(s) 1565
VpaK11BI GGWCC 4 cut(s) 635, 653, 1130, 1184
XagI CCTNNNNNAGG 2 cut(s) 1224, 1617
XapI RAATTY 3 cut(s) 871, 1755, 2020
XceI RCATGY 1 cut(s) 934
XcmI CCANNNNNNNNNTGG 2 cut(s) 670, 1916
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 6 cut(s) 107, 510, 678, 1629, 1785, 2207
ZraI GACGTC 1 cut(s) 1075
ZrmI AGTACT 1 cut(s) 1498
Zsp2I ATGCAT 1 cut(s) 891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.