Rmu_sc0014367.1_g000005

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014367.1
OG0000153
Physical Location & Seq
Reverse (-)
22651 .. 24129
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014367.1_g000005.1.cds

Sequence Viewer

Length: 756 bp
atggcacaagcatctgagtcttctcagcctactgaacttcatgaccaccacttctcactggaagatggtctcattcatgcttccaccacgggggcttgtaaaggtagctcagaggaggaatctcatgagttttctgggtgctttgtctctcccaagttcatatccaggttgcttattgagcggggagagtaccctgcagtgcctatatgtttcggtatcctgcgaggacccctgcgggttggcctgaatgggtcagcttcgagatggagtcctgaaactcacacgttcatctgttcttggggggaatttactccttctctggaagatgtttgcaataatatgcgaatcccgatcgttggggatggtaatcccttcaagatagagctaaataaagcgcagaagaagaagctgcagattctgaaaaggggtgcttatgattctaaagaagtgttccgtttttgctactggtccataatggcatgcggtgatttctttgaccccgtgatggagaagtattctcctcatagagttaacaggcaatttggcatcgaccaagatgtgccatcgcatctatcttacggtggacatcttggggattgcatcatgggtttcactcggacagatggtatttcctgcaggggtatgctctcctatagtctcgggaagaaaggttgtgttggatcccctacatcaacattcttgagattttgggagttgcagcggtgcgagtttaggaggtttatgttgtcaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

251

Amino Acids

28.23

Weight (kDa)

7.09

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 181
AciI CCGC 4 cut(s) 181, 235, 483, 721
AclWI GGATC 2 cut(s) 675, 688
AcsI RAATTY 1 cut(s) 305
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 3 cut(s) 90, 356, 505
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 1 cut(s) 376
AjnI CCWGG 1 cut(s) 164
AluBI AGCT 4 cut(s) 108, 257, 385, 409
AluI AGCT 4 cut(s) 108, 257, 385, 409
Alw26I GTCTC 3 cut(s) 74, 151, 662
AlwI GGATC 2 cut(s) 675, 688
AlwNI CAGNNNCTG 1 cut(s) 418
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 2 cut(s) 409, 718
ApoI RAATTY 1 cut(s) 305
AspLEI GCGC 1 cut(s) 397
AspS9I GGNCC 2 cut(s) 227, 468
AsuHPI GGTGA 1 cut(s) 497
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 2 cut(s) 227, 468
BamHI GGATCC 1 cut(s) 680
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 396, 730
BccI CCATC 6 cut(s) 59, 258, 356, 499, 571, 617
BciT130I CCWGG 1 cut(s) 166
BciVI GTATCC 1 cut(s) 227
BcoDI GTCTC 3 cut(s) 74, 151, 662
BfmI CTRYAG 4 cut(s) 195, 410, 634, 652
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 2 cut(s) 410, 719
BlsI GCNGC 2 cut(s) 411, 720
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 227, 468
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 227, 468
BmiI GGNNCC 2 cut(s) 229, 682
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 4 cut(s) 20, 555, 577, 609
BpiI GAAGAC 1 cut(s) 12
BpuEI CTTGAG 1 cut(s) 721
BsaBI GATNNNNATC 1 cut(s) 366
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 90, 356, 505
Bse1I ACTGG 2 cut(s) 63, 470
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 3 cut(s) 90, 356, 505
BseMII CTCAG 3 cut(s) 6, 38, 123
BseNI ACTGG 2 cut(s) 63, 470
BseRI GAGGAG 2 cut(s) 128, 510
BseXI GCAGC 2 cut(s) 396, 730
Bsh1285I CGRYCG 1 cut(s) 354
BshFI GGCC 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 659
BslI CCNNNNNNNGG 3 cut(s) 90, 356, 505
BsmAI GTCTC 3 cut(s) 74, 151, 662
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 659
Bsp143I GATC 2 cut(s) 351, 680
BspACI CCGC 4 cut(s) 181, 235, 483, 721
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 3 cut(s) 7, 37, 122
BspHI TCATGA 2 cut(s) 40, 124
BspLI GGNNCC 2 cut(s) 229, 682
BspMAI CTGCAG 3 cut(s) 199, 414, 638
BspPI GGATC 2 cut(s) 675, 688
BspTNI GGTCTC 1 cut(s) 74
BsrBI CCGCTC 1 cut(s) 181
BsrI ACTGG 2 cut(s) 63, 470
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 2 cut(s) 351, 680
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 581
BstC8I GCNNGC 1 cut(s) 481
BstDEI CTNAG 3 cut(s) 15, 24, 109
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 367
BstHHI GCGC 1 cut(s) 397
BstKTI GATC 2 cut(s) 354, 683
BstMAI GTCTC 3 cut(s) 74, 151, 662
BstMBI GATC 2 cut(s) 351, 680
BstMCI CGRYCG 1 cut(s) 354
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 1 cut(s) 164
BstSFI CTRYAG 4 cut(s) 195, 410, 634, 652
BstV1I GCAGC 2 cut(s) 396, 730
BstV2I GAAGAC 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 680
BstYI RGATCY 1 cut(s) 680
BsuI GTATCC 1 cut(s) 227
BsuRI GGCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 549
BtsCI GGATG 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 204
BtsIMutI CAGTG 2 cut(s) 56, 204
Cac8I GCNNGC 1 cut(s) 481
CaiI CAGNNNCTG 1 cut(s) 418
CciI TCATGA 2 cut(s) 40, 124
CfoI GCGC 1 cut(s) 397
Cfr13I GGNCC 2 cut(s) 227, 468
Csp6I GTAC 1 cut(s) 190
CviAII CATG 5 cut(s) 41, 77, 125, 480, 604
CviJI RGCY 7 cut(s) 28, 95, 108, 243, 257, 385, 409
CviKI_1 RGCY 7 cut(s) 28, 95, 108, 243, 257, 385, 409
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 3 cut(s) 15, 24, 109
DpnI GATC 2 cut(s) 353, 682
DpnII GATC 2 cut(s) 351, 680
Eco31I GGTCTC 1 cut(s) 74
Eco47I GGWCC 2 cut(s) 227, 468
Eco88I CYCGRG 1 cut(s) 659
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 164
FaeI CATG 5 cut(s) 44, 80, 128, 483, 607
FalI AAGNNNNNCTT 2 cut(s) 415, 447
FatI CATG 5 cut(s) 40, 76, 124, 479, 603
FauI CCCGC 2 cut(s) 174, 228
Fnu4HI GCNGC 2 cut(s) 410, 719
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 2 cut(s) 410, 719
GlaI GCGC 1 cut(s) 396
GluI GCNGC 2 cut(s) 410, 719
HaeIII GGCC 1 cut(s) 243
HhaI GCGC 1 cut(s) 397
Hin1II CATG 5 cut(s) 44, 80, 128, 483, 607
Hin6I GCGC 1 cut(s) 395
HinP1I GCGC 1 cut(s) 395
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HinfI GANTC 6 cut(s) 17, 119, 268, 345, 415, 437
HpaI GTTAAC 1 cut(s) 532
HphI GGTGA 1 cut(s) 497
Hpy166II GTNNAC 2 cut(s) 532, 584
Hpy188I TCNGA 4 cut(s) 16, 112, 420, 618
Hpy188III TCNNGA 9 cut(s) 41, 125, 261, 272, 320, 349, 376, 661, 700
Hpy8I GTNNAC 2 cut(s) 532, 584
HpyAV CCTTC 2 cut(s) 324, 382
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 6 cut(s) 197, 333, 412, 600, 636, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 15, 24, 109
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 5 cut(s) 44, 80, 128, 483, 607
HspAI GCGC 1 cut(s) 395
KspAI GTTAAC 1 cut(s) 532
Kzo9I GATC 2 cut(s) 351, 680
Lsp1109I GCAGC 2 cut(s) 396, 730
LweI GCATC 4 cut(s) 20, 555, 577, 609
MaeII ACGT 1 cut(s) 284
MalI GATC 2 cut(s) 353, 682
MbiI CCGCTC 1 cut(s) 181
MboI GATC 2 cut(s) 351, 680
MboII GAAGA 6 cut(s) 12, 74, 335, 412, 415, 676
MflI RGATCY 1 cut(s) 680
MluCI AATT 3 cut(s) 305, 539, 750
MlyI GAGTC 2 cut(s) 26, 277
MmeI TCCRAC 1 cut(s) 658
MnlI CCTC 5 cut(s) 106, 109, 218, 531, 729
MseI TTAA 2 cut(s) 531, 754
MspA1I CMGCKG 1 cut(s) 721
MspR9I CCNGG 1 cut(s) 166
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 351, 680
NlaIII CATG 5 cut(s) 44, 80, 128, 483, 607
NlaIV GGNNCC 2 cut(s) 229, 682
NspI RCATGY 1 cut(s) 483
PaeI GCATGC 1 cut(s) 483
PagI TCATGA 2 cut(s) 40, 124
PfeI GAWTC 4 cut(s) 119, 345, 415, 437
PkrI GCNGC 2 cut(s) 411, 720
Ple19I CGATCG 1 cut(s) 354
PleI GAGTC 2 cut(s) 25, 276
PpsI GAGTC 2 cut(s) 25, 276
PpuMI RGGWCCY 1 cut(s) 227
Psp5II RGGWCCY 1 cut(s) 227
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspN4I GGNNCC 2 cut(s) 229, 682
PspPI GGNCC 2 cut(s) 227, 468
PspPPI RGGWCCY 1 cut(s) 227
PstI CTGCAG 3 cut(s) 199, 414, 638
PstNI CAGNNNCTG 1 cut(s) 418
PsuI RGATCY 1 cut(s) 680
PvuI CGATCG 1 cut(s) 354
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
SaqAI TTAA 2 cut(s) 531, 754
SatI GCNGC 2 cut(s) 410, 719
Sau3AI GATC 2 cut(s) 351, 680
Sau96I GGNCC 2 cut(s) 227, 468
SbfI CCTGCAGG 1 cut(s) 638
SchI GAGTC 2 cut(s) 26, 277
ScrFI CCNGG 1 cut(s) 166
SdaI CCTGCAGG 1 cut(s) 638
SetI ASST 9 cut(s) 106, 110, 170, 259, 287, 387, 411, 673, 740
SfaNI GCATC 4 cut(s) 20, 555, 577, 609
SfcI CTRYAG 4 cut(s) 195, 410, 634, 652
SinI GGWCC 2 cut(s) 227, 468
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
SphI GCATGC 1 cut(s) 483
Sse8387I CCTGCAGG 1 cut(s) 638
Sse9I AATT 3 cut(s) 305, 539, 750
SsiI CCGC 4 cut(s) 181, 235, 483, 721
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 1 cut(s) 287
TaqI TCGA 2 cut(s) 260, 549
TasI AATT 3 cut(s) 305, 539, 750
TfiI GAWTC 4 cut(s) 119, 345, 415, 437
Tru1I TTAA 2 cut(s) 531, 754
Tru9I TTAA 2 cut(s) 531, 754
TscAI CASTG 2 cut(s) 63, 204
TseI GCWGC 2 cut(s) 409, 718
TspDTI ATGAA 4 cut(s) 29, 65, 148, 277
TspGWI ACGGA 1 cut(s) 443
TspRI CASTG 2 cut(s) 63, 204
VpaK11BI GGWCC 2 cut(s) 227, 468
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.