FvH4_2g16130

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000153
Physical Location & Seq
Reverse (-)
14056877 .. 14057686
810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16130.t1

Sequence Viewer

Length: 810 bp
ATGGCTCCGAAGATTAAAGCTTCTCAACCTGCTGAGCTTCGCAACCATTATTTCTCGCTGGAAGATGGTCTTAAAGTTGCACCTATGGCGGTAAATGGTGAAGGCAATTCAGGGGGGACATCTCATGAGTTTGCGGCTCATTTTGTTCCCCCAAATTCTATTTCCAGGCTATTGATTGAACGAGGGGATTACCCAGCAGCGCCTATTTGCTTTAAGTACTCTTCAAAGCCTGTCACGGGTTGGTCAGATTGGATATGTCATGAGATGGAGCAGGAGGAGTACGGAGAAGCCATCAACGAGGCAGAGGTGAAAATTTCTCTATTCATTTCTGGTTTCTGTGAAGTTTATAAAGACGACATCTGCCTCCGCCATGTTGTACGAAGATGGAGTCCTTTTACTCACACATTTATCTGCTCTTGGGGGGAGTTCACTCCTACCTTGGAGGATGTAAACAACATCATGAGGCTCCCATCGACTGGAGATGCTGACCCTTTCAGCATAGTGCTGGATCAGGATGAGAAGGAAAAACTAGCGATCTTAGAGTTATGCGCCTGCTTTTCTAAGGAGAGGTTCCGATTTTGCCATTGGGTGCGGCACTTCTGGGGTTCAGTTGATGGGGAAGGTGTTGGTTTTGCTTCTGGTTGCCGCCTGGCAGCCATGTTTGCCTATTGGTTGAGTAGATTCTTATTTCCTGATTTTCCTTACAAGAATGTCCAACGATTCTTCCTTCTTGCCATCAAGCTAGCAGACGGTGTCCGTTTTCCGTTGGCCCCTCTATTCCTCAGCCATCAGTATCGGATGCTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

270

Amino Acids

30.73

Weight (kDa)

5.74

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 110 - 268 1.7e-21 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 476
AciI CCGC 5 cut(s) 89, 134, 367, 592, 646
AclWI GGATC 1 cut(s) 516
AcsI RAATTY 2 cut(s) 154, 312
AfaI GTAC 3 cut(s) 218, 281, 378
AfiI CCNNNNNNNGG 2 cut(s) 236, 476
AgsI TTSAA 2 cut(s) 179, 225
AjnI CCWGG 2 cut(s) 164, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 3 cut(s) 20, 37, 742
AluI AGCT 3 cut(s) 20, 37, 742
AlwI GGATC 1 cut(s) 516
AoxI GGCC 1 cut(s) 768
ApeKI GCWGC 2 cut(s) 197, 653
ApoI RAATTY 2 cut(s) 154, 312
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AspLEI GCGC 2 cut(s) 202, 551
AspS9I GGNCC 1 cut(s) 769
AsuHPI GGTGA 2 cut(s) 110, 319
AsuNHI GCTAGC 1 cut(s) 742
BbvCI CCTCAGC 1 cut(s) 782
BbvI GCAGC 2 cut(s) 209, 665
BccI CCATC 8 cut(s) 59, 259, 299, 378, 478, 608, 743, 795
BciT130I CCWGG 2 cut(s) 166, 650
BfaI CTAG 2 cut(s) 530, 743
BfoI RGCGCY 1 cut(s) 203
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 5 cut(s) 135, 198, 593, 646, 654
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 5 cut(s) 136, 199, 594, 647, 655
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 166, 650
BmgT120I GGNCC 1 cut(s) 769
BmiI GGNNCC 4 cut(s) 6, 467, 572, 771
BmrFI CCNGG 2 cut(s) 166, 650
BmsI GCATC 2 cut(s) 472, 789
BmtI GCTAGC 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 782
Bpu1102I GCTNAGC 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 438
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 476
Bse1I ACTGG 1 cut(s) 481
BseBI CCWGG 2 cut(s) 166, 650
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 3 cut(s) 451, 520, 804
BseLI CCNNNNNNNGG 2 cut(s) 236, 476
BseMII CTCAG 2 cut(s) 24, 796
BseNI ACTGG 1 cut(s) 481
BseRI GAGGAG 1 cut(s) 290
BseXI GCAGC 2 cut(s) 209, 665
BseYI CCCAGC 1 cut(s) 193
BshFI GGCC 1 cut(s) 770
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 236, 476
BsmFI GGGAC 1 cut(s) 130
BsnI GGCC 1 cut(s) 770
Bsp143I GATC 2 cut(s) 508, 534
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 5 cut(s) 89, 134, 367, 592, 646
BspANI GGCC 1 cut(s) 770
BspCNI CTCAG 2 cut(s) 25, 795
BspHI TCATGA 3 cut(s) 124, 259, 459
BspLI GGNNCC 4 cut(s) 6, 467, 572, 771
BspMI ACCTGC 1 cut(s) 37
BspOI GCTAGC 1 cut(s) 746
BspPI GGATC 1 cut(s) 516
BsrI ACTGG 1 cut(s) 481
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 2 cut(s) 508, 534
BssT1I CCWWGG 1 cut(s) 438
Bst2UI CCWGG 2 cut(s) 166, 650
Bst4CI ACNGT 1 cut(s) 752
Bst6I CTCTTC 1 cut(s) 226
BstC8I GCNNGC 2 cut(s) 553, 744
BstDEI CTNAG 4 cut(s) 33, 538, 561, 782
BstF5I GGATG 3 cut(s) 451, 520, 804
BstH2I RGCGCY 1 cut(s) 203
BstHHI GCGC 2 cut(s) 202, 551
BstKTI GATC 2 cut(s) 511, 537
BstMBI GATC 2 cut(s) 508, 534
BstMWI GCNNNNNNNGC 2 cut(s) 86, 662
BstNI CCWGG 2 cut(s) 166, 650
BstSCI CCNGG 2 cut(s) 164, 648
BstV1I GCAGC 2 cut(s) 209, 665
BsuRI GGCC 1 cut(s) 770
BtsCI GGATG 3 cut(s) 451, 520, 804
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 553, 744
CciI TCATGA 3 cut(s) 124, 259, 459
CfoI GCGC 2 cut(s) 202, 551
Cfr13I GGNCC 1 cut(s) 769
Csp6I GTAC 3 cut(s) 217, 280, 377
CviAII CATG 5 cut(s) 125, 260, 371, 460, 658
CviQI GTAC 3 cut(s) 217, 280, 377
DdeI CTNAG 4 cut(s) 33, 538, 561, 782
DpnI GATC 2 cut(s) 510, 536
DpnII GATC 2 cut(s) 508, 534
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
EciI GGCGGA 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 438
EcoRII CCWGG 2 cut(s) 164, 648
EcoT14I CCWWGG 1 cut(s) 438
ErhI CCWWGG 1 cut(s) 438
FaeI CATG 5 cut(s) 128, 263, 374, 463, 661
FalI AAGNNNNNCTT 2 cut(s) 54, 86
FaqI GGGAC 1 cut(s) 130
FatI CATG 5 cut(s) 124, 259, 370, 459, 657
Fnu4HI GCNGC 5 cut(s) 135, 198, 593, 646, 654
FokI GGATG 2 cut(s) 458, 527
Fsp4HI GCNGC 5 cut(s) 135, 198, 593, 646, 654
FspBI CTAG 2 cut(s) 530, 743
GlaI GCGC 2 cut(s) 201, 550
GluI GCNGC 5 cut(s) 135, 198, 593, 646, 654
GsaI CCCAGC 1 cut(s) 197
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 203
HaeIII GGCC 1 cut(s) 770
HhaI GCGC 2 cut(s) 202, 551
Hin1II CATG 5 cut(s) 128, 263, 374, 463, 661
Hin6I GCGC 2 cut(s) 200, 549
HinP1I GCGC 2 cut(s) 200, 549
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 3 cut(s) 388, 681, 720
HphI GGTGA 2 cut(s) 110, 319
Hpy166II GTNNAC 2 cut(s) 429, 451
Hpy188I TCNGA 4 cut(s) 9, 247, 575, 798
Hpy188III TCNNGA 5 cut(s) 125, 260, 460, 512, 692
Hpy8I GTNNAC 2 cut(s) 429, 451
HpyAV CCTTC 4 cut(s) 95, 514, 614, 737
HpyCH4III ACNGT 1 cut(s) 752
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 662
HpyF3I CTNAG 4 cut(s) 33, 538, 561, 782
Hsp92II CATG 5 cut(s) 128, 263, 374, 463, 661
HspAI GCGC 2 cut(s) 200, 549
Kzo9I GATC 2 cut(s) 508, 534
LmnI GCTCC 3 cut(s) 10, 268, 471
Lsp1109I GCAGC 2 cut(s) 209, 665
LweI GCATC 2 cut(s) 472, 789
MaeI CTAG 2 cut(s) 530, 743
MaeIII GTNAC 1 cut(s) 232
MalI GATC 2 cut(s) 510, 536
MboI GATC 2 cut(s) 508, 534
MboII GAAGA 5 cut(s) 22, 74, 213, 393, 715
MluCI AATT 3 cut(s) 106, 154, 312
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 1 cut(s) 739
MseI TTAA 3 cut(s) 15, 72, 213
MspR9I CCNGG 2 cut(s) 166, 650
MvaI CCWGG 2 cut(s) 166, 650
MwoI GCNNNNNNNGC 2 cut(s) 86, 662
NdeII GATC 2 cut(s) 508, 534
NheI GCTAGC 1 cut(s) 742
NlaIII CATG 5 cut(s) 128, 263, 374, 463, 661
NlaIV GGNNCC 4 cut(s) 6, 467, 572, 771
NmuCI GTSAC 1 cut(s) 232
PagI TCATGA 3 cut(s) 124, 259, 459
PfeI GAWTC 2 cut(s) 681, 720
PflFI GACNNNGTC 1 cut(s) 752
PflMI CCANNNNNTGG 1 cut(s) 476
PkrI GCNGC 5 cut(s) 136, 199, 594, 647, 655
PleI GAGTC 1 cut(s) 396
PpsI GAGTC 1 cut(s) 396
PsiI TTATAA 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 164, 648
PspFI CCCAGC 1 cut(s) 193
PspGI CCWGG 2 cut(s) 164, 648
PspN4I GGNNCC 4 cut(s) 6, 467, 572, 771
PspPI GGNCC 1 cut(s) 769
PsyI GACNNNGTC 1 cut(s) 752
RsaI GTAC 3 cut(s) 218, 281, 378
RsaNI GTAC 3 cut(s) 217, 280, 377
SaqAI TTAA 3 cut(s) 15, 72, 213
SatI GCNGC 5 cut(s) 135, 198, 593, 646, 654
Sau3AI GATC 2 cut(s) 508, 534
Sau96I GGNCC 1 cut(s) 769
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 2 cut(s) 166, 650
SetI ASST 9 cut(s) 22, 31, 39, 85, 309, 440, 572, 625, 744
SfaNI GCATC 2 cut(s) 472, 789
Sse9I AATT 3 cut(s) 106, 154, 312
SsiI CCGC 5 cut(s) 89, 134, 367, 592, 646
SspMI CTAG 2 cut(s) 530, 743
StyD4I CCNGG 2 cut(s) 164, 648
StyI CCWWGG 1 cut(s) 438
TaaI ACNGT 1 cut(s) 752
TaqI TCGA 1 cut(s) 473
TasI AATT 3 cut(s) 106, 154, 312
TatI WGTACW 1 cut(s) 216
TauI GCSGC 3 cut(s) 137, 595, 648
TfiI GAWTC 2 cut(s) 681, 720
Tru1I TTAA 3 cut(s) 15, 72, 213
Tru9I TTAA 3 cut(s) 15, 72, 213
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 2 cut(s) 197, 653
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 1 cut(s) 313
TspGWI ACGGA 3 cut(s) 297, 746, 753
Tth111I GACNNNGTC 1 cut(s) 752
Van91I CCANNNNNTGG 1 cut(s) 476
XapI RAATTY 2 cut(s) 154, 312
XspI CTAG 2 cut(s) 530, 743
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.