Rmu_sc0004229.1_g000011

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004229.1
OG0000153
Physical Location & Seq
Forward (+)
53628 .. 60176
6549 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004229.1_g000011.1.cds

Sequence Viewer

Length: 2370 bp
atgaactcgccttttatagtggagatagacggggaggatttgtgccaagaaccagaggctttgaaagggtatttttggtgggatcattctaaatctttcagcttttgttttccccatgaaaccaaaagagtgaaagcttgctttggctatgagggtgaagatcaatggcacagattcctgtatcttcctaatcacatcatggctcctgaggtatgtagtctagtcgatcatcattttgtgcttgaggatggccttaaaaaggagtttagaggcaattttgaagcctctagagatgtcagccttgagcagatttccaggctattgattgagaggagggattatccggcagtccccataaactttgagtatccttgtggtttagttacagggtggccacaatgggttgacaatgagcaaaaagacgaggccacgagaactagactttcagaggctgctgtcctttcttctgtattcatctctgctcactgtgatattaacaaggatgtggaatctcttcgtcatgtagttcgaaggtggaatcctcacacgcatacctttgtttgcgagtggggaaagtttacccctactttggaggatgtcttcaacattatgaggcttcccattaccgattcagtcaacccccttggtaaaggcttcaattctggttgctgtctggaagcaatgctatctctgtggctaacgaaatttgtttcctttggtcatgtctatcgtttgcttgactacatagttgttgacgagttggagagtgttggtcggtttggagttactacattggtttctaccacctttctgcaagtatttatctgggaacggttcaaaggactaaaggtggagcccttgaccatgagtctatccttagaattgtacaacaatgacaaggaaggcagcaagcaagcacagactgaatatttgccgctggtacttcctctgctgtgtcgctggttcaaaaggagacaagataagatagtgttttccttgagcatgttggatgatgtaaataatttcatctggcagccctatctccagccttctgagtttgagaccttttcattttctggtagagaagagcagtgtgctatagctctcagtcgggttgagctctacttgactatttgcccaaattttatcccatccatcagtgaggataaggaagacttggatattttccctgtcgtttattctcctgatagagtgatgcggcaacttggttgccttcaagatgctccctcgcctccacctcgctctcttaactctaagatcagaaatttttctcatatggagcgtagatgtgtacttgatttctctggcagaattgcggacttcccatctcagttcaggctctttgtggaaatcggcagtcctcagctagagttaggacttattaccagcagtaggttggctagccccaaggctgtactaacttatgctgaaaagcataatctcacctatactgaagtgtacagcgatggtactagaaagattgtcggctatttaaagggttttgaagctaagagggcgaagggagagggaaggaagtgtgataagaaggcgggtgataagggtaatgcaaaggaacacaacactcagaagcctgttcggcgattcaagcccaaggtgtattttggtaagtttatgtatacgacccaatatagagtcaaattgacgatttccccaagcatgtcgcttcaaaagaacaaggaggtaaagaagaaaacatcctcaacctcccgagcaagtggtacttttcatgcaaagcaagcgaatgctacaagttttgaagtaaagaaaggggtgaagaggaaggctggtgtagattttgatgtccctcttcgtcgaagcaatcgtgtaaagtctatgagttctccttctcctcgtggtccttcagtttatcttgagttgtctgagtctgatcacggagaggattctcaagggggtccaactgattcttctaaagaggaccatactaatttttcaaaagaggccattgaaaacggcggtgtgagtaatgacaatcaggagcagaatcatcctttagatgttggtaagagtaatgacgggtttggtcatgacacggtagtacatgccttattggttgagtctgataagcatgctccagggattgataagatgaccatcattgagactcaaagccttgacccaagtttgcctggcatggctgatgttgcaccagtattgagcggagacactgctgattttgcgggtatgaaaattccttcagagttagcgggtcccttggctagatttgctgagagatatagtggtggagatatctttaacttaattgatcgagactatacttcaaggaagaagtgcgagttgattaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

789

Amino Acids

89.5

Weight (kDa)

6.52

Isoelectric Point (pI)

44.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 2220
AccI GTMKAC 1 cut(s) 1658
AciI CCGC 8 cut(s) 935, 1219, 1337, 1571, 2016, 2220, 2240, 2267
AclWI GGATC 1 cut(s) 90
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 4 cut(s) 704, 1141, 1285, 2250
AcuI CTGAAG 3 cut(s) 1494, 1887, 2241
AfaI GTAC 8 cut(s) 887, 942, 1314, 1437, 1481, 1492, 1762, 2100
AfiI CCNNNNNNNGG 3 cut(s) 259, 589, 1413
AhdI GACNNNNNGTC 1 cut(s) 867
AjnI CCWGG 3 cut(s) 314, 2134, 2188
AjuI GAANNNNNNNTTGG 2 cut(s) 1951, 1983
AluBI AGCT 6 cut(s) 102, 137, 1103, 1120, 1387, 1529
AluI AGCT 6 cut(s) 102, 137, 1103, 1120, 1387, 1529
Alw21I GWGCWC 1 cut(s) 1122
Alw26I GTCTC 5 cut(s) 967, 1055, 2156, 2217, 2325
AlwI GGATC 1 cut(s) 90
AlwNI CAGNNNCTG 1 cut(s) 452
Ama87I CYCGRG 1 cut(s) 1749
AoxI GGCC 4 cut(s) 250, 392, 426, 2001
ApeKI GCWGC 3 cut(s) 452, 906, 1033
ApoI RAATTY 4 cut(s) 704, 1141, 1285, 2250
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
Asp700I GAANNNNTTC 2 cut(s) 513, 1288
AspS9I GGNCC 4 cut(s) 1898, 1955, 1978, 2270
AsuHPI GGTGA 4 cut(s) 167, 1456, 1586, 1825
AsuII TTCGAA 1 cut(s) 529
AsuNHI GCTAGC 1 cut(s) 1421
AvaI CYCGRG 1 cut(s) 1749
AvaII GGWCC 4 cut(s) 1898, 1955, 1978, 2270
AxyI CCTNAGG 1 cut(s) 207
BalI TGGCCA 1 cut(s) 394
BanII GRGCYC 2 cut(s) 858, 1122
BauI CACGAG 2 cut(s) 430, 1893
BbsI GAAGAC 2 cut(s) 592, 1179
Bbv12I GWGCWC 1 cut(s) 1122
BbvCI CCTCAGC 1 cut(s) 1383
BbvI GCAGC 3 cut(s) 439, 918, 1045
BccI CCATC 6 cut(s) 242, 1159, 1163, 1354, 1481, 2162
BceAI ACGGC 1 cut(s) 2029
BciT130I CCWGG 3 cut(s) 316, 2136, 2190
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 1 cut(s) 1930
BcoDI GTCTC 5 cut(s) 967, 1055, 2156, 2217, 2325
BfaI CTAG 7 cut(s) 221, 288, 438, 1388, 1422, 1494, 2280
BfmI CTRYAG 1 cut(s) 1098
BfuI GTATCC 1 cut(s) 378
BglI GCCNNNNNGGC 1 cut(s) 1618
BisI GCNGC 5 cut(s) 453, 907, 935, 1034, 1220
BlsI GCNGC 5 cut(s) 454, 908, 936, 1035, 1221
Bme1390I CCNGG 3 cut(s) 316, 2136, 2190
Bme18I GGWCC 4 cut(s) 1898, 1955, 1978, 2270
BmeRI GACNNNNNGTC 1 cut(s) 867
BmeT110I CYCGRG 1 cut(s) 1749
BmgT120I GGNCC 4 cut(s) 1898, 1955, 1978, 2270
BmiI GGNNCC 5 cut(s) 204, 855, 1956, 2271, 2272
BmrFI CCNGG 3 cut(s) 316, 2136, 2190
BmsI GCATC 2 cut(s) 1206, 1231
BmtI GCTAGC 1 cut(s) 1425
BpiI GAAGAC 2 cut(s) 592, 1179
BpmI CTGGAG 2 cut(s) 1028, 2118
Bpu10I CCTNAGC 1 cut(s) 1383
Bpu14I TTCGAA 1 cut(s) 529
BpuEI CTTGAG 5 cut(s) 263, 323, 1018, 1932, 1934
BsaBI GATNNNNATC 1 cut(s) 2153
BsaI GGTCTC 1 cut(s) 1055
BsaJI CCNNGG 5 cut(s) 643, 1428, 1632, 2135, 2274
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 589, 1413
Bse1I ACTGG 1 cut(s) 2210
Bse21I CCTNAGG 1 cut(s) 207
Bse3DI GCAATG 1 cut(s) 687
Bse8I GATNNNNATC 1 cut(s) 2153
BseBI CCWGG 3 cut(s) 316, 2136, 2190
BseDI CCNNGG 5 cut(s) 643, 1428, 1632, 2135, 2274
BseGI GGATG 7 cut(s) 253, 508, 601, 1015, 1151, 1736, 2047
BseJI GATNNNNATC 1 cut(s) 2153
BseLI CCNNNNNNNGG 3 cut(s) 259, 589, 1413
BseMI GCAATG 1 cut(s) 687
BseMII CTCAG 8 cut(s) 198, 1044, 1120, 1364, 1397, 1619, 1914, 2280
BseNI ACTGG 1 cut(s) 2210
BseRI GAGGAG 2 cut(s) 346, 1881
BseXI GCAGC 3 cut(s) 439, 918, 1045
BshFI GGCC 4 cut(s) 252, 394, 428, 2003
BsiHKAI GWGCWC 1 cut(s) 1122
BsiHKCI CYCGRG 1 cut(s) 1749
BsiSI CCGG 1 cut(s) 344
BslFI GGGAC 3 cut(s) 335, 1829, 2256
BslI CCNNNNNNNGG 3 cut(s) 259, 589, 1413
BsmAI GTCTC 5 cut(s) 967, 1055, 2156, 2217, 2325
BsmFI GGGAC 3 cut(s) 335, 1829, 2256
BsmI GAATGC 1 cut(s) 1789
BsnI GGCC 4 cut(s) 252, 394, 428, 2003
Bso31I GGTCTC 1 cut(s) 1055
BsoBI CYCGRG 1 cut(s) 1749
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 2 cut(s) 858, 1122
Bsp1407I TGTACA 2 cut(s) 885, 1479
Bsp143I GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
BspACI CCGC 8 cut(s) 935, 1219, 1337, 1571, 2016, 2220, 2240, 2267
BspANI GGCC 4 cut(s) 252, 394, 428, 2003
BspCNI CTCAG 8 cut(s) 199, 1045, 1119, 1363, 1396, 1618, 1915, 2281
BspHI TCATGA 1 cut(s) 2086
BspLI GGNNCC 5 cut(s) 204, 855, 1956, 2271, 2272
BspOI GCTAGC 1 cut(s) 1425
BspPI GGATC 1 cut(s) 90
BspQI GCTCTTC 1 cut(s) 1080
BspT104I TTCGAA 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 1055
BsrBI CCGCTC 1 cut(s) 2220
BsrDI GCAATG 1 cut(s) 687
BsrGI TGTACA 2 cut(s) 885, 1479
BsrI ACTGG 1 cut(s) 2210
BssECI CCNNGG 5 cut(s) 643, 1428, 1632, 2135, 2274
BssMI GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
BssNAI GTATAC 1 cut(s) 1659
BssSI CACGAG 2 cut(s) 430, 1893
BssT1I CCWWGG 4 cut(s) 643, 1428, 1632, 2274
Bst1107I GTATAC 1 cut(s) 1659
Bst2BI CACGAG 2 cut(s) 430, 1893
Bst2UI CCWGG 3 cut(s) 316, 2136, 2190
Bst4CI ACNGT 3 cut(s) 488, 834, 2095
Bst6I CTCTTC 4 cut(s) 519, 1080, 1811, 1854
BstAUI TGTACA 2 cut(s) 885, 1479
BstBI TTCGAA 1 cut(s) 529
BstC8I GCNNGC 6 cut(s) 139, 911, 915, 1423, 1779, 2130
BstENI CCTNNNNNAGG 1 cut(s) 257
BstF5I GGATG 7 cut(s) 253, 508, 601, 1015, 1151, 1736, 2047
BstKTI GATC 6 cut(s) 85, 163, 229, 1281, 1933, 2329
BstMAI GTCTC 5 cut(s) 967, 1055, 2156, 2217, 2325
BstMBI GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
BstMWI GCNNNNNNNGC 7 cut(s) 1535, 1618, 1627, 1778, 2204, 2237, 2285
BstNI CCWGG 3 cut(s) 316, 2136, 2190
BstNSI RCATGY 4 cut(s) 1006, 1702, 2105, 2132
BstSCI CCNGG 3 cut(s) 314, 2134, 2188
BstSFI CTRYAG 1 cut(s) 1098
BstV1I GCAGC 3 cut(s) 439, 918, 1045
BstV2I GAAGAC 2 cut(s) 592, 1179
BstZ17I GTATAC 1 cut(s) 1659
Bsu36I CCTNAGG 1 cut(s) 207
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 4 cut(s) 252, 394, 428, 2003
BtgZI GCGATG 1 cut(s) 1500
BtsCI GGATG 7 cut(s) 253, 508, 601, 1015, 1151, 1736, 2047
BtsI GCAGTG 2 cut(s) 1097, 2226
BtsIMutI CAGTG 4 cut(s) 484, 1097, 1165, 2226
Cac8I GCNNGC 6 cut(s) 139, 911, 915, 1423, 1779, 2130
CaiI CAGNNNCTG 1 cut(s) 452
CciI TCATGA 1 cut(s) 2086
Cfr13I GGNCC 4 cut(s) 1898, 1955, 1978, 2270
Csp6I GTAC 8 cut(s) 886, 941, 1313, 1436, 1480, 1491, 1761, 2099
CviQI GTAC 8 cut(s) 886, 941, 1313, 1436, 1480, 1491, 1761, 2099
DpnI GATC 6 cut(s) 84, 162, 228, 1280, 1932, 2328
DpnII GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
DraI TTTAAA 1 cut(s) 1515
DriI GACNNNNNGTC 1 cut(s) 867
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 4 cut(s) 519, 1080, 1811, 1854
Eam1105I GACNNNNNGTC 1 cut(s) 867
EarI CTCTTC 4 cut(s) 519, 1080, 1811, 1854
Ecl136II GAGCTC 1 cut(s) 1120
Eco130I CCWWGG 4 cut(s) 643, 1428, 1632, 2274
Eco24I GRGCYC 2 cut(s) 858, 1122
Eco31I GGTCTC 1 cut(s) 1055
Eco32I GATATC 1 cut(s) 2311
Eco47I GGWCC 4 cut(s) 1898, 1955, 1978, 2270
Eco53kI GAGCTC 1 cut(s) 1120
Eco57I CTGAAG 3 cut(s) 1494, 1887, 2241
Eco81I CCTNAGG 1 cut(s) 207
Eco88I CYCGRG 1 cut(s) 1749
EcoICRI GAGCTC 1 cut(s) 1120
EcoNI CCTNNNNNAGG 1 cut(s) 257
EcoO109I RGGNCCY 1 cut(s) 2270
EcoRII CCWGG 3 cut(s) 314, 2134, 2188
EcoRV GATATC 1 cut(s) 2311
EcoT14I CCWWGG 4 cut(s) 643, 1428, 1632, 2274
EcoT38I GRGCYC 2 cut(s) 858, 1122
ErhI CCWWGG 4 cut(s) 643, 1428, 1632, 2274
FalI AAGNNNNNCTT 4 cut(s) 1160, 1192, 1747, 1779
FaqI GGGAC 3 cut(s) 335, 1829, 2256
FauI CCCGC 3 cut(s) 1564, 2233, 2260
FauNDI CATATG 1 cut(s) 1296
FbaI TGATCA 1 cut(s) 1930
FblI GTMKAC 1 cut(s) 1658
Fnu4HI GCNGC 5 cut(s) 453, 907, 935, 1034, 1220
FokI GGATG 7 cut(s) 260, 515, 608, 1022, 1138, 1723, 2034
FriOI GRGCYC 2 cut(s) 858, 1122
Fsp4HI GCNGC 5 cut(s) 453, 907, 935, 1034, 1220
FspBI CTAG 7 cut(s) 221, 288, 438, 1388, 1422, 1494, 2280
GluI GCNGC 5 cut(s) 453, 907, 935, 1034, 1220
GsuI CTGGAG 2 cut(s) 1028, 2118
HaeIII GGCC 4 cut(s) 252, 394, 428, 2003
HapII CCGG 1 cut(s) 344
HincII GTYRAC 3 cut(s) 406, 637, 754
HindII GTYRAC 3 cut(s) 406, 637, 754
HindIII AAGCTT 1 cut(s) 135
HpaII CCGG 1 cut(s) 344
HphI GGTGA 4 cut(s) 167, 1456, 1586, 1825
Hpy166II GTNNAC 7 cut(s) 406, 579, 637, 754, 1313, 1480, 1659
Hpy188I TCNGA 8 cut(s) 448, 1054, 1283, 1608, 1924, 1930, 2122, 2260
Hpy8I GTNNAC 7 cut(s) 406, 579, 637, 754, 1313, 1480, 1659
Hpy99I CGWCG 1 cut(s) 1857
HpyCH4III ACNGT 3 cut(s) 488, 834, 2095
HpyCH4V TGCA 4 cut(s) 814, 1589, 1772, 2207
HpyF10VI GCNNNNNNNGC 7 cut(s) 1535, 1618, 1627, 1778, 2204, 2237, 2285
KflI GGGWCCC 1 cut(s) 2270
Ksp22I TGATCA 1 cut(s) 1930
Kzo9I GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
LguI GCTCTTC 1 cut(s) 1080
LmnI GCTCC 6 cut(s) 208, 853, 1249, 1300, 2038, 2137
Lsp1109I GCAGC 3 cut(s) 439, 918, 1045
LweI GCATC 2 cut(s) 1206, 1231
MaeI CTAG 7 cut(s) 221, 288, 438, 1388, 1422, 1494, 2280
MaeIII GTNAC 2 cut(s) 382, 784
MalI GATC 6 cut(s) 84, 162, 228, 1280, 1932, 2328
MbiI CCGCTC 1 cut(s) 2220
MboI GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
MhlI GDGCHC 2 cut(s) 858, 1122
MlsI TGGCCA 1 cut(s) 394
MluNI TGGCCA 1 cut(s) 394
MlyI GAGTC 5 cut(s) 877, 1683, 1934, 2126, 2158
MmeI TCCRAC 3 cut(s) 741, 987, 1982
Mox20I TGGCCA 1 cut(s) 394
MroXI GAANNNNTTC 2 cut(s) 513, 1288
MscI TGGCCA 1 cut(s) 394
MseI TTAA 7 cut(s) 255, 495, 1269, 1514, 2316, 2321, 2364
Msp20I TGGCCA 1 cut(s) 394
MspA1I CMGCKG 1 cut(s) 937
MspI CCGG 1 cut(s) 344
MspR9I CCNGG 3 cut(s) 316, 2136, 2190
Mva1269I GAATGC 1 cut(s) 1789
MvaI CCWGG 3 cut(s) 316, 2136, 2190
MwoI GCNNNNNNNGC 7 cut(s) 1535, 1618, 1627, 1778, 2204, 2237, 2285
NdeI CATATG 1 cut(s) 1296
NdeII GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
NheI GCTAGC 1 cut(s) 1421
NlaIV GGNNCC 5 cut(s) 204, 855, 1956, 2271, 2272
NspI RCATGY 4 cut(s) 1006, 1702, 2105, 2132
NspV TTCGAA 1 cut(s) 529
PaeI GCATGC 1 cut(s) 2132
PagI TCATGA 1 cut(s) 2086
PciSI GCTCTTC 1 cut(s) 1080
PcsI WCGNNNNNNNCGW 1 cut(s) 1861
PctI GAATGC 1 cut(s) 1789
PdmI GAANNNNTTC 2 cut(s) 513, 1288
PfeI GAWTC 8 cut(s) 174, 509, 538, 629, 1623, 1943, 1964, 2044
PkrI GCNGC 5 cut(s) 454, 908, 936, 1035, 1221
PleI GAGTC 5 cut(s) 876, 1682, 1933, 2125, 2158
PpsI GAGTC 5 cut(s) 876, 1682, 1933, 2125, 2158
PpuMI RGGWCCY 1 cut(s) 2270
Psp124BI GAGCTC 1 cut(s) 1122
Psp5II RGGWCCY 1 cut(s) 2270
Psp6I CCWGG 3 cut(s) 314, 2134, 2188
PspGI CCWGG 3 cut(s) 314, 2134, 2188
PspN4I GGNNCC 5 cut(s) 204, 855, 1956, 2271, 2272
PspPI GGNCC 4 cut(s) 1898, 1955, 1978, 2270
PspPPI RGGWCCY 1 cut(s) 2270
PstNI CAGNNNCTG 1 cut(s) 452
RsaI GTAC 8 cut(s) 887, 942, 1314, 1437, 1481, 1492, 1762, 2100
RsaNI GTAC 8 cut(s) 886, 941, 1313, 1436, 1480, 1491, 1761, 2099
SacI GAGCTC 1 cut(s) 1122
SapI GCTCTTC 1 cut(s) 1080
SaqAI TTAA 7 cut(s) 255, 495, 1269, 1514, 2316, 2321, 2364
SatI GCNGC 5 cut(s) 453, 907, 935, 1034, 1220
Sau3AI GATC 6 cut(s) 82, 160, 226, 1278, 1930, 2326
Sau96I GGNCC 4 cut(s) 1898, 1955, 1978, 2270
SchI GAGTC 5 cut(s) 877, 1683, 1934, 2126, 2158
ScrFI CCNGG 3 cut(s) 316, 2136, 2190
SduI GDGCHC 2 cut(s) 858, 1122
SfaNI GCATC 2 cut(s) 1206, 1231
SfcI CTRYAG 1 cut(s) 1098
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 4 cut(s) 1898, 1955, 1978, 2270
SmlI CTYRAG 5 cut(s) 242, 302, 997, 1913, 1947
SmoI CTYRAG 5 cut(s) 242, 302, 997, 1913, 1947
SphI GCATGC 1 cut(s) 2132
SsiI CCGC 8 cut(s) 935, 1219, 1337, 1571, 2016, 2220, 2240, 2267
SspI AATATT 1 cut(s) 929
SspMI CTAG 7 cut(s) 221, 288, 438, 1388, 1422, 1494, 2280
SstI GAGCTC 1 cut(s) 1122
StyD4I CCNGG 3 cut(s) 314, 2134, 2188
StyI CCWWGG 4 cut(s) 643, 1428, 1632, 2274
TaaI ACNGT 3 cut(s) 488, 834, 2095
TaqI TCGA 4 cut(s) 225, 529, 1855, 2329
TatI WGTACW 5 cut(s) 885, 1312, 1435, 1479, 2098
TauI GCSGC 2 cut(s) 937, 1222
TfiI GAWTC 8 cut(s) 174, 509, 538, 629, 1623, 1943, 1964, 2044
Tru1I TTAA 7 cut(s) 255, 495, 1269, 1514, 2316, 2321, 2364
Tru9I TTAA 7 cut(s) 255, 495, 1269, 1514, 2316, 2321, 2364
TscAI CASTG 4 cut(s) 491, 1097, 1165, 2233
TseI GCWGC 3 cut(s) 452, 906, 1033
TspDTI ATGAA 7 cut(s) 17, 132, 463, 1015, 1059, 1757, 2261
TspGWI ACGGA 1 cut(s) 1950
TspRI CASTG 4 cut(s) 491, 1097, 1165, 2233
VpaK11BI GGWCC 4 cut(s) 1898, 1955, 1978, 2270
XagI CCTNNNNNAGG 1 cut(s) 257
XapI RAATTY 4 cut(s) 704, 1141, 1285, 2250
XbaI TCTAGA 1 cut(s) 287
XceI RCATGY 4 cut(s) 1006, 1702, 2105, 2132
XcmI CCANNNNNNNNNTGG 1 cut(s) 1414
XmiI GTMKAC 1 cut(s) 1658
XmnI GAANNNNTTC 2 cut(s) 513, 1288
XspI CTAG 7 cut(s) 221, 288, 438, 1388, 1422, 1494, 2280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.