Rmu_sc0021286.1_g000001

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021286.1
OG0000153
Physical Location & Seq
Reverse (-)
2 .. 510
509 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021286.1_g000001.1.cds

Sequence Viewer

Length: 509 bp
atgtgcaggtccccgtattcttctaatctcatcatggctcccgaggtgtgtagtttagttgatcaccatttcgtgctcgaggatggtcttaagaaggattttagaggcaattatgagacttccagagacgtcagtcttgcgaagatttcaaggctactgattgagagatgggattacccggcagttcccataaactttgagtatccctgtggcttagttacgggatggccacaatgggttgactatgaactaggagatgaggctgtgagaatcagtctttccgaagctgctgttctttcttccgtattcatctctgcccgttgtgatatcaacagggatgtagagtctctccgtcatgtagttcgaaggtggaatcctcatacgcatacctttgtttgcgattggggagagtttacccctaccttggaagatgtcttgaacattatgaggcttcccattactggttccgtcaaccctcttggctttgattttgactcagagaagttgca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

169

Amino Acids

19.36

Weight (kDa)

4.94

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 132
AcoI YGGCCR 1 cut(s) 227
AcyI GRCGYC 1 cut(s) 129
AfiI CCNNNNNNNGG 2 cut(s) 424, 461
AflII CTTAAG 1 cut(s) 89
AgsI TTSAA 2 cut(s) 150, 439
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 3 cut(s) 110, 120, 351
Ama87I CYCGRG 2 cut(s) 41, 77
AoxI GGCC 1 cut(s) 227
ApeKI GCWGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 56
AsuII TTCGAA 1 cut(s) 364
AvaI CYCGRG 2 cut(s) 41, 77
AvaII GGWCC 1 cut(s) 9
BalI TGGCCA 1 cut(s) 229
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 274
BccI CCATC 3 cut(s) 77, 162, 219
BciVI GTATCC 1 cut(s) 213
BclI TGATCA 1 cut(s) 61
BcnI CCSGG 1 cut(s) 179
BcoDI GTCTC 3 cut(s) 110, 120, 351
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 213
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 9
BmeT110I CYCGRG 2 cut(s) 41, 77
BmgT120I GGNCC 1 cut(s) 9
BmiI GGNNCC 3 cut(s) 11, 39, 466
BmrFI CCNGG 1 cut(s) 179
BoxI GACNNNNGTC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 364
BpuMI CCSGG 1 cut(s) 179
BsaHI GRCGYC 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 42, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 424, 461
Bse1I ACTGG 1 cut(s) 466
BseDI CCNNGG 2 cut(s) 42, 423
BseGI GGATG 3 cut(s) 88, 230, 343
BseLI CCNNNNNNNGG 2 cut(s) 424, 461
BseNI ACTGG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 25
BshFI GGCC 1 cut(s) 229
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 2 cut(s) 41, 77
BsiSI CCGG 1 cut(s) 179
BslI CCNNNNNNNGG 2 cut(s) 424, 461
BsmAI GTCTC 3 cut(s) 110, 120, 351
BsmBI CGTCTC 1 cut(s) 120
BsnI GGCC 1 cut(s) 229
BsoBI CYCGRG 2 cut(s) 41, 77
Bsp119I TTCGAA 1 cut(s) 364
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 61
BspANI GGCC 1 cut(s) 229
BspCNI CTCAG 1 cut(s) 509
BspLI GGNNCC 3 cut(s) 11, 39, 466
BspT104I TTCGAA 1 cut(s) 364
BspTI CTTAAG 1 cut(s) 89
BsrI ACTGG 1 cut(s) 466
BssECI CCNNGG 2 cut(s) 42, 423
BssMI GATC 1 cut(s) 61
BssNI GRCGYC 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 423
BstACI GRCGYC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 364
BstDEI CTNAG 2 cut(s) 214, 496
BstF5I GGATG 3 cut(s) 88, 230, 343
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 3 cut(s) 110, 120, 351
BstMBI GATC 1 cut(s) 61
BstPAI GACNNNNGTC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 274
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 1 cut(s) 229
BtsCI GGATG 3 cut(s) 88, 230, 343
Cfr13I GGNCC 1 cut(s) 9
CviAII CATG 2 cut(s) 34, 356
CviJI RGCY 8 cut(s) 38, 154, 213, 229, 263, 287, 451, 483
CviKI_1 RGCY 8 cut(s) 38, 154, 213, 229, 263, 287, 451, 483
DdeI CTNAG 2 cut(s) 214, 496
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 423
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 9
Eco88I CYCGRG 2 cut(s) 41, 77
EcoO109I RGGNCCY 1 cut(s) 9
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 1 cut(s) 423
ErhI CCWWGG 1 cut(s) 423
Esp3I CGTCTC 1 cut(s) 120
FaeI CATG 2 cut(s) 37, 359
FaiI YATR 8 cut(s) 35, 114, 191, 246, 357, 381, 387, 446
FatI CATG 2 cut(s) 33, 355
FbaI TGATCA 1 cut(s) 61
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 3 cut(s) 95, 237, 350
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 229
HapII CCGG 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 129
Hin1II CATG 2 cut(s) 37, 359
HincII GTYRAC 2 cut(s) 241, 472
HindII GTYRAC 2 cut(s) 241, 472
HinfI GANTC 4 cut(s) 270, 344, 373, 494
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 56
Hpy166II GTNNAC 3 cut(s) 241, 414, 472
Hpy188I TCNGA 2 cut(s) 283, 499
Hpy188III TCNNGA 3 cut(s) 41, 123, 436
Hpy8I GTNNAC 3 cut(s) 241, 414, 472
HpyAV CCTTC 2 cut(s) 88, 360
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 2 cut(s) 6, 508
HpyF3I CTNAG 2 cut(s) 214, 496
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 129
Hsp92II CATG 2 cut(s) 37, 359
Ksp22I TGATCA 1 cut(s) 61
Kzo9I GATC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 5 cut(s) 136, 192, 220, 319, 447
Lsp1109I GCAGC 1 cut(s) 274
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 4 cut(s) 12, 154, 291, 440
MhlI GDGCHC 1 cut(s) 78
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 1 cut(s) 109
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 2 cut(s) 353, 488
MnlI CCTC 7 cut(s) 37, 73, 98, 253, 387, 441, 486
Mox20I TGGCCA 1 cut(s) 229
MscI TGGCCA 1 cut(s) 229
MseI TTAA 1 cut(s) 90
Msp20I TGGCCA 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 179
NciI CCSGG 1 cut(s) 179
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 37, 359
NlaIV GGNNCC 3 cut(s) 11, 39, 466
NspV TTCGAA 1 cut(s) 364
PaeR7I CTCGAG 1 cut(s) 77
PfeI GAWTC 2 cut(s) 270, 373
PkrI GCNGC 1 cut(s) 289
PleI GAGTC 2 cut(s) 352, 488
PpsI GAGTC 2 cut(s) 352, 488
PpuMI RGGWCCY 1 cut(s) 9
PshAI GACNNNNGTC 1 cut(s) 132
Psp5II RGGWCCY 1 cut(s) 9
PspN4I GGNNCC 3 cut(s) 11, 39, 466
PspPI GGNCC 1 cut(s) 9
PspPPI RGGWCCY 1 cut(s) 9
PspXI VCTCGAGB 1 cut(s) 77
SaqAI TTAA 1 cut(s) 90
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 9
SchI GAGTC 2 cut(s) 353, 488
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 1 cut(s) 78
SetI ASST 7 cut(s) 11, 48, 132, 289, 371, 392, 425
Sfr274I CTCGAG 1 cut(s) 77
SfuI TTCGAA 1 cut(s) 364
SinI GGWCC 1 cut(s) 9
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 77, 89
SmoI CTYRAG 2 cut(s) 77, 89
Sse9I AATT 1 cut(s) 109
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 423
TaiI ACGT 1 cut(s) 132
TaqI TCGA 2 cut(s) 78, 364
TasI AATT 1 cut(s) 109
TfiI GAWTC 2 cut(s) 270, 373
Tru1I TTAA 1 cut(s) 90
Tru9I TTAA 1 cut(s) 90
TseI GCWGC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 261, 298
TspGWI ACGGA 3 cut(s) 292, 341, 457
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 9
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 1 cut(s) 251
ZraI GACGTC 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.