Rmu_sc0000796.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000796.1
OG0000153
Physical Location & Seq
Forward (+)
69413 .. 70021
609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000796.1_g000017.1.cds

Sequence Viewer

Length: 510 bp
atgaacaacttcataattcgatttgcttctaaagaggagtcggctctaagcatggctgacgttgcgccagcattaaatggagacactgctgattttgcgggcatgaaaattccttcagagttagcgggtcccttggctagatttgctgagagatatagtgggggagatatatttaacttaattgatcgagacgatacttcaagaaaaaagtgtgagttggttaaggaacttggcatgatgttgtacaacatgaaattaaaacaaggtgcacaacacttctttggttatacgataaggcctgaaggatcaaagaaccagtgtgttaaaattcgtggtccgcaggagatggtttcacaaaccaagaaggagcttgcacgtcttgagagagagttgcgcaaggctcaagatgatttgaatttcagtttgcgtgatgttcccatgcttgctatggagtatgtactggaatcttcttggcatgatgatagttgcttctttcattatctgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.35

Weight (kDa)

5.96

Isoelectric Point (pI)

27.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 395
AciI CCGC 3 cut(s) 98, 125, 338
AclWI GGATC 1 cut(s) 313
AcsI RAATTY 3 cut(s) 108, 327, 415
AcuI CTGAAG 2 cut(s) 99, 321
AfaI GTAC 3 cut(s) 245, 459, 506
AgsI TTSAA 2 cut(s) 201, 415
AjiI CACGTC 1 cut(s) 377
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 75, 183
Alw44I GTGCAC 1 cut(s) 267
AlwI GGATC 1 cut(s) 313
AoxI GGCC 1 cut(s) 296
ApaLI GTGCAC 1 cut(s) 267
ApoI RAATTY 3 cut(s) 108, 327, 415
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 67, 396
AspS9I GGNCC 2 cut(s) 128, 335
AvaII GGWCC 2 cut(s) 128, 335
BaeGI GKGCMC 1 cut(s) 271
Bbv12I GWGCWC 1 cut(s) 271
BccI CCATC 1 cut(s) 340
BcoDI GTCTC 2 cut(s) 75, 183
BfaI CTAG 2 cut(s) 138, 508
Bme18I GGWCC 2 cut(s) 128, 335
BmgBI CACGTC 1 cut(s) 377
BmgT120I GGNCC 2 cut(s) 128, 335
BmiI GGNNCC 2 cut(s) 129, 130
BpuEI CTTGAG 2 cut(s) 387, 401
BsaJI CCNNGG 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 316, 465
BseDI CCNNGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 316, 465
BseRI GAGGAG 1 cut(s) 50
BseSI GKGCMC 1 cut(s) 271
BshFI GGCC 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 271
BslFI GGGAC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 75, 183
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 1 cut(s) 298
Bsp1286I GDGCHC 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 243
Bsp143I GATC 2 cut(s) 184, 305
BspACI CCGC 3 cut(s) 98, 125, 338
BspANI GGCC 1 cut(s) 298
BspCNI CTCAG 1 cut(s) 139
BspLI GGNNCC 2 cut(s) 129, 130
BspPI GGATC 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 243
BsrI ACTGG 2 cut(s) 316, 465
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 2 cut(s) 184, 305
BssT1I CCWWGG 1 cut(s) 132
BstAUI TGTACA 1 cut(s) 243
BstC8I GCNNGC 4 cut(s) 69, 100, 372, 444
BstDEI CTNAG 2 cut(s) 47, 147
BstHHI GCGC 2 cut(s) 67, 396
BstKTI GATC 2 cut(s) 187, 308
BstMAI GTCTC 2 cut(s) 75, 183
BstMBI GATC 2 cut(s) 184, 305
BstMWI GCNNNNNNNGC 3 cut(s) 62, 95, 143
BstSLI GKGCMC 1 cut(s) 271
BsuRI GGCC 1 cut(s) 298
BtrI CACGTC 1 cut(s) 377
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 2 cut(s) 84, 323
Cac8I GCNNGC 4 cut(s) 69, 100, 372, 444
CfoI GCGC 2 cut(s) 67, 396
Cfr13I GGNCC 2 cut(s) 128, 335
Csp6I GTAC 3 cut(s) 244, 458, 505
CviAII CATG 6 cut(s) 52, 103, 235, 250, 439, 476
CviJI RGCY 6 cut(s) 44, 56, 137, 298, 370, 401
CviKI_1 RGCY 6 cut(s) 44, 56, 137, 298, 370, 401
CviQI GTAC 3 cut(s) 244, 458, 505
DdeI CTNAG 2 cut(s) 47, 147
DpnI GATC 2 cut(s) 186, 307
DpnII GATC 2 cut(s) 184, 305
Eco130I CCWWGG 1 cut(s) 132
Eco147I AGGCCT 1 cut(s) 298
Eco47I GGWCC 2 cut(s) 128, 335
Eco57I CTGAAG 2 cut(s) 99, 321
EcoO109I RGGNCCY 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 6 cut(s) 55, 106, 238, 253, 442, 479
FaqI GGGAC 1 cut(s) 114
FatI CATG 6 cut(s) 51, 102, 234, 249, 438, 475
FauI CCCGC 2 cut(s) 91, 118
FspBI CTAG 2 cut(s) 138, 508
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 2 cut(s) 66, 395
HaeIII GGCC 1 cut(s) 298
HhaI GCGC 2 cut(s) 67, 396
Hin1II CATG 6 cut(s) 55, 106, 238, 253, 442, 479
Hin6I GCGC 2 cut(s) 65, 394
HinP1I GCGC 2 cut(s) 65, 394
HinfI GANTC 2 cut(s) 38, 464
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 1 cut(s) 118
Hpy188III TCNNGA 4 cut(s) 188, 201, 380, 404
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 3 cut(s) 123, 296, 358
HpyCH4IV ACGT 2 cut(s) 60, 376
HpyCH4V TGCA 2 cut(s) 269, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 62, 95, 143
HpyF3I CTNAG 2 cut(s) 47, 147
HpySE526I ACGT 2 cut(s) 60, 376
Hsp92II CATG 6 cut(s) 55, 106, 238, 253, 442, 479
HspAI GCGC 2 cut(s) 65, 394
KflI GGGWCCC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 184, 305
LmnI GCTCC 1 cut(s) 367
LpnPI CCDG 5 cut(s) 81, 312, 326, 329, 446
MaeI CTAG 2 cut(s) 138, 508
MaeII ACGT 2 cut(s) 60, 376
MalI GATC 2 cut(s) 186, 307
MboI GATC 2 cut(s) 184, 305
MboII GAAGA 1 cut(s) 459
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 6 cut(s) 15, 108, 180, 254, 327, 415
MlyI GAGTC 1 cut(s) 47
MnlI CCTC 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 6 cut(s) 74, 174, 179, 222, 257, 324
MwoI GCNNNNNNNGC 3 cut(s) 62, 95, 143
NdeII GATC 2 cut(s) 184, 305
NlaIII CATG 6 cut(s) 55, 106, 238, 253, 442, 479
NlaIV GGNNCC 2 cut(s) 129, 130
NsbI TGCGCA 1 cut(s) 395
PceI AGGCCT 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 464
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
PspN4I GGNNCC 2 cut(s) 129, 130
PspPI GGNCC 2 cut(s) 128, 335
PspPPI RGGWCCY 1 cut(s) 128
RsaI GTAC 3 cut(s) 245, 459, 506
RsaNI GTAC 3 cut(s) 244, 458, 505
SaqAI TTAA 6 cut(s) 74, 174, 179, 222, 257, 324
Sau3AI GATC 2 cut(s) 184, 305
Sau96I GGNCC 2 cut(s) 128, 335
SchI GAGTC 1 cut(s) 47
SduI GDGCHC 1 cut(s) 271
SetI ASST 4 cut(s) 63, 268, 372, 379
SinI GGWCC 2 cut(s) 128, 335
SmlI CTYRAG 2 cut(s) 380, 402
SmoI CTYRAG 2 cut(s) 380, 402
Sse9I AATT 6 cut(s) 15, 108, 180, 254, 327, 415
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 3 cut(s) 98, 125, 338
SspMI CTAG 2 cut(s) 138, 508
StuI AGGCCT 1 cut(s) 298
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 2 cut(s) 63, 379
TaqI TCGA 2 cut(s) 19, 187
TasI AATT 6 cut(s) 15, 108, 180, 254, 327, 415
TatI WGTACW 3 cut(s) 243, 457, 504
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 6 cut(s) 74, 174, 179, 222, 257, 324
Tru9I TTAA 6 cut(s) 74, 174, 179, 222, 257, 324
TscAI CASTG 2 cut(s) 91, 323
TspDTI ATGAA 4 cut(s) 17, 119, 266, 485
TspRI CASTG 2 cut(s) 91, 323
VneI GTGCAC 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 128, 335
XapI RAATTY 3 cut(s) 108, 327, 415
XcmI CCANNNNNNNNNTGG 1 cut(s) 445
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 138, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.