Rmu_sc0001163.1_g000004

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001163.1
OG0000153
Physical Location & Seq
Reverse (-)
6732 .. 11260
4529 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001163.1_g000004.1.cds

Sequence Viewer

Length: 3348 bp
atgtgcaggtccctgtattcttctaatctcatcatggctcccgaggtgtgtagtttagttgatcaccatttcgtgcttgaggatggtcttaagaaggactttagaggcaattatgaaacttccagagatgttagtcttgagcagatttcaaggctactgattgagagaggggattatccggcagttcccataaactttgagtatccttgtggtttagttacgggatggccacaatgggttgactatgaactaggagatgaggctgcaagaatcagactttcagaagctgctgttctttcttccgtattcatctctgctcgttgtgatatcaacagggatgtggagtctctccgtcatgtagttcgaaggtggaatcctcatacacatacctttgtttgcgagtggggagagtttacccctaccttggaggatgtcttgaacattatgaggcttcccattactggttccgtcaatcctcttggctttgattttgactcaaaaaagttgcaagttcttatagaaggggcttccagtattaaaggaagtaagcgccgcttctcaaattgggtgaagcatttttggggtgttaccgaaaatggggtatttgtcccgggtaaaggctttgattctggctgtcgtctggaagcgatgctatccctgtggctgacgaagtttgtcttcattgagttttcttatgagtatgttgaagagcgcttatttcctttagcaattgcaatagcagccggcagtaggtttcctctgggaccaatgttccttggtcacgtttatcgtatgcttgaccatatagttgctgacgaattggagagcgttggtcggtgtggagtcactacattggtttctaccacctttctgcaggtattcatctgggaacggtttaaaggattaaagatggagcctctgaccatgagtctttctttggaattatataataatgacaaggaaggcagcaagcaagcacagactgagtatttgccgccggtacttcctctgttgtgccgttggttcaaaaggagacaagataagactgtgttcgctccgagcatgttagataatgtgaataatttcatctggcagccctatctccagtcttctgagtttgagactttttcgttttctggtaaagaagagcagtgtactacagctctaggtcgggttgaactgtacatgactgtttgcccaaacttcattccgtccatcagtgaggataaggaagacttggatatcttccctgttgtttattctcctgacagagtgatgcggcaacttggctgccttcaggacgttccctcacctccacctcgctctcttaactctaatatcacaagcttttctcatatggagcgtagatgcgtacttgacttttccggcagaattgcggacttcccatctcagctgccagggaatgccgcgaatgctaacgcttcccctgcctatagttgttattggaggggagtgttgtgccggttcaggctttttgtggaagctggtggtcctcagctacagttgggacctattaccagcagcagattggctagccccaaggccgtactgacttatgctgaaaagcataaccttacgtataccgaagtgtacagtgatggcaccagaagagttgttggctatttgaagggctttgaagctaagagggtgaagggagagggaaagaagtgcgataagaaaatgggtgataaaggtgatgcaagggagcacgacactcagaagcctgttcggcgtttcaagcccaagatggattttgacaagtttatgcatacgacccaacacggagtcaaactgatgatcccctcaagcatgccgcttcaaaaaaacaaggaggtcaagaagaaaaggtcttcaacaccccgagcaggtggtacttcccaaacaaagcaagcgaatgctaccaatttcgaagtgaagaaaagggtgaagagggaggtcggtgtagattttgatgtccctcttcgtcgaagcaaccgtgtgaaatccaagagttcccctttgcctcgtggtcctccagcttatcttgagttatctgattctgatcatggaggggggtctcaagggggtctagccgattcttctaaagaagatcatgctactccttcaaaaggggcttctgatcatctgcctgaagtacttcccatggttagccaagatagtgacaaccaggctatcgaagatgaaggcatgagtaatggcgataaggccgtagaagatgaaggcatgagtaacggtgataaggccgtcacagatgatggcacgagcgatggtgataagatggtcgaagatgaaggcacgagtgataagcaagctttggaaaacgacagtgtgagcaatgataatcaggttgatgcaggatctgagcctttgcaacatattccgggtgagagtgaggataatgatcaggtcgggagatcacttgtggtatgttgcattactcgcgtgtctgtgtttttgtctcgcttgcgaagtgtgcttgagtattttataatcatgcagcatgatattgaagtgtttatgcttttcccagttgctgagcaggggcatccttcagaagttgataagagtactgacggggttggtcatgacacggcggtacagtccctagttgagtttgataagcccatttcagggattgataaggtgaccgtcatccaaactcaaagccttggcccaagcttgcctgccaaagggtcaactagtgagtgggcgacccatatggacaatttcatggttcgatttgcttctaaagaggagtccgctttaagcatggctgatgttacaccagtgttgagcggagacatcgctgtttttgctggtatgaaaattccttcagagttggtgagccccttgactaggtttgctgagagatatagcggcggagatatctttagtttgattgatcgaaattatacttcaaggaagaagtgtgagttgattaaggaacttggcatgatgttatttagcatggaagtttgccagataaaagatggagaagtattcctcatttggagagacacctgtcgtgatttcatgggggcaggccttaacattggcttcctgttagattccttaaaacaaggtgcaaagaatttcttcggttacatgatgaggtctgaaagatcagagaaccagtatgtcaaagtccaaggcttgcaggagatggtttcgcaaaccaagaaggagcttgcacgtcttgagggagagttgcgtaaggctcaagatgatctgagttccagtctgcgtgatatttctgttcctgccatggagtgcgtactagaatcttcttggaaggatggcagttgcttttcttattatttgtattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

1115

Amino Acids

124.89

Weight (kDa)

5.56

Isoelectric Point (pI)

47.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2510
AarI CACCTGC 1 cut(s) 1877
Acc36I ACCTGC 2 cut(s) 865, 1877
AccB1I GGYRCC 1 cut(s) 1622
AccBSI CCGCTC 1 cut(s) 2817
AccI GTMKAC 1 cut(s) 1601
AccII CGCG 2 cut(s) 1430, 2463
AclWI GGATC 2 cut(s) 1813, 2386
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 2 cut(s) 2847, 3112
AcuI CTGAAG 4 cut(s) 1280, 2172, 2556, 2838
AfeI AGCGCT 1 cut(s) 713
AflII CTTAAG 1 cut(s) 89
AhdI GACNNNNNGTC 1 cut(s) 927
AhlI ACTAGT 1 cut(s) 2720
AjiI CACGTC 1 cut(s) 3215
AjnI CCWGG 2 cut(s) 1417, 2187
Alw21I GWGCWC 1 cut(s) 1731
Alw26I GTCTC 7 cut(s) 351, 1027, 1115, 2082, 2484, 2814, 3030
AlwI GGATC 2 cut(s) 1813, 2386
AlwNI CAGNNNCTG 3 cut(s) 287, 2381, 2555
Ama87I CYCGRG 3 cut(s) 41, 610, 1881
Aor51HI AGCGCT 1 cut(s) 713
AoxI GGCC 6 cut(s) 227, 1563, 2226, 2262, 2692, 3064
ApeKI GCWGC 9 cut(s) 263, 287, 740, 966, 1093, 1290, 1414, 1542, 2518
ApoI RAATTY 2 cut(s) 2847, 3112
ArsI GACNNNNNNTTYG 2 cut(s) 973, 1005
Asp700I GAANNNNTTC 3 cut(s) 1082, 2157, 3116
AspLEI GCGC 2 cut(s) 552, 714
AspS9I GGNCC 6 cut(s) 9, 764, 1511, 1529, 2030, 2693
AsuC2I CCSGG 3 cut(s) 611, 612, 2403
AsuII TTCGAA 2 cut(s) 364, 1929
AsuNHI GCTAGC 1 cut(s) 1553
AvaI CYCGRG 3 cut(s) 41, 610, 1881
AvaII GGWCC 5 cut(s) 9, 764, 1511, 1529, 2030
BalI TGGCCA 1 cut(s) 229
BanI GGYRCC 1 cut(s) 1622
BanII GRGCYC 1 cut(s) 2870
BauI CACGAG 3 cut(s) 2025, 2281, 2317
BbsI GAAGAC 4 cut(s) 670, 1101, 1239, 1863
Bbv12I GWGCWC 1 cut(s) 1731
BbvCI CCTCAGC 1 cut(s) 1515
BbvI GCAGC 9 cut(s) 250, 274, 752, 978, 1105, 1277, 1401, 1554, 2530
BceAI ACGGC 5 cut(s) 1002, 1550, 2213, 2249, 2628
BciT130I CCWGG 2 cut(s) 1419, 2189
BciVI GTATCC 1 cut(s) 213
BclI TGATCA 4 cut(s) 61, 2062, 2140, 2422
BcnI CCSGG 3 cut(s) 611, 612, 2403
BcoDI GTCTC 7 cut(s) 351, 1027, 1115, 2082, 2484, 2814, 3030
BcuI ACTAGT 1 cut(s) 2720
BfaI CTAG 8 cut(s) 251, 1166, 1554, 2090, 2627, 2721, 2877, 3299
BfmI CTRYAG 4 cut(s) 872, 1158, 1453, 1520
BfoI RGCGCY 2 cut(s) 553, 715
BfrI CTTAAG 1 cut(s) 89
BfuAI ACCTGC 2 cut(s) 865, 1877
BfuI GTATCC 1 cut(s) 213
BglI GCCNNNNNGGC 1 cut(s) 1750
BlpI GCTNAGC 1 cut(s) 2556
BmcAI AGTACT 2 cut(s) 2157, 2590
Bme1390I CCNGG 5 cut(s) 611, 612, 1419, 2189, 2403
Bme18I GGWCC 5 cut(s) 9, 764, 1511, 1529, 2030
BmeRI GACNNNNNGTC 1 cut(s) 927
BmeT110I CYCGRG 3 cut(s) 41, 610, 1881
BmgBI CACGTC 1 cut(s) 3215
BmgT120I GGNCC 6 cut(s) 9, 764, 1511, 1529, 2030, 2693
BmiI GGNNCC 7 cut(s) 11, 39, 466, 765, 915, 1530, 1624
BmrFI CCNGG 5 cut(s) 611, 612, 1419, 2189, 2403
BmrI ACTGGG 1 cut(s) 2543
BmsI GCATC 6 cut(s) 639, 1266, 1358, 1708, 2362, 2575
BmtI GCTAGC 1 cut(s) 1557
BmuI ACTGGG 1 cut(s) 2543
BoxI GACNNNNGTC 1 cut(s) 3042
BpiI GAAGAC 4 cut(s) 670, 1101, 1239, 1863
BpmI CTGGAG 2 cut(s) 1088, 2019
Bpu10I CCTNAGC 1 cut(s) 1515
Bpu1102I GCTNAGC 1 cut(s) 2556
Bpu14I TTCGAA 2 cut(s) 364, 1929
BpuEI CTTGAG 8 cut(s) 98, 158, 1810, 2064, 2066, 2519, 3225, 3239
BpuMI CCSGG 3 cut(s) 611, 612, 2403
BsaAI YACGTR 1 cut(s) 1599
BsaBI GATNNNNATC 2 cut(s) 2061, 2421
BsaI GGTCTC 1 cut(s) 2082
Bse118I RCCGGY 3 cut(s) 743, 997, 1482
Bse1I ACTGG 7 cut(s) 466, 531, 1105, 2549, 2807, 3154, 3258
Bse3DI GCAATG 1 cut(s) 2362
Bse8I GATNNNNATC 2 cut(s) 2061, 2421
BseBI CCWGG 2 cut(s) 1419, 2189
BseGI GGATG 7 cut(s) 88, 230, 343, 436, 2566, 2673, 3322
BseJI GATNNNNATC 2 cut(s) 2061, 2421
BseMI GCAATG 1 cut(s) 2362
BseMII CTCAG 9 cut(s) 975, 1104, 1424, 1529, 1751, 2373, 2547, 2877, 3242
BseNI ACTGG 7 cut(s) 466, 531, 1105, 2549, 2807, 3154, 3258
BseRI GAGGAG 1 cut(s) 2789
BseXI GCAGC 9 cut(s) 250, 274, 752, 978, 1105, 1277, 1401, 1554, 2530
BsgI GTGCAG 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 1430, 2463
BshFI GGCC 6 cut(s) 229, 1565, 2228, 2264, 2694, 3066
BshNI GGYRCC 1 cut(s) 1622
BsiHKAI GWGCWC 1 cut(s) 1731
BsiHKCI CYCGRG 3 cut(s) 41, 610, 1881
BsiSI CCGG 7 cut(s) 179, 611, 744, 998, 1386, 1483, 2402
BslFI GGGAC 5 cut(s) 593, 777, 1542, 1961, 2608
BsmAI GTCTC 7 cut(s) 351, 1027, 1115, 2082, 2484, 2814, 3030
BsmFI GGGAC 5 cut(s) 593, 777, 1542, 1961, 2608
BsmI GAATGC 3 cut(s) 1429, 1438, 1921
BsnI GGCC 6 cut(s) 229, 1565, 2228, 2264, 2694, 3066
Bso31I GGTCTC 1 cut(s) 2082
BsoBI CYCGRG 3 cut(s) 41, 610, 1881
Bsp119I TTCGAA 2 cut(s) 364, 1929
Bsp1286I GDGCHC 2 cut(s) 1731, 2870
Bsp1407I TGTACA 2 cut(s) 1182, 1611
Bsp1720I GCTNAGC 1 cut(s) 2556
Bsp19I CCATGG 2 cut(s) 2163, 3285
BspANI GGCC 6 cut(s) 229, 1565, 2228, 2264, 2694, 3066
BspCNI CTCAG 9 cut(s) 976, 1105, 1423, 1528, 1750, 2374, 2548, 2878, 3243
BspFNI CGCG 2 cut(s) 1430, 2463
BspHI TCATGA 1 cut(s) 2605
BspLI GGNNCC 7 cut(s) 11, 39, 466, 765, 915, 1530, 1624
BspMAI CTGCAG 1 cut(s) 876
BspMI ACCTGC 2 cut(s) 865, 1877
BspOI GCTAGC 1 cut(s) 1557
BspPI GGATC 2 cut(s) 1813, 2386
BspQI GCTCTTC 2 cut(s) 702, 1140
BspT104I TTCGAA 2 cut(s) 364, 1929
BspT107I GGYRCC 1 cut(s) 1622
BspTI CTTAAG 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 2082
BsrBI CCGCTC 1 cut(s) 2817
BsrDI GCAATG 1 cut(s) 2362
BsrFI RCCGGY 3 cut(s) 743, 997, 1482
BsrGI TGTACA 2 cut(s) 1182, 1611
BsrI ACTGG 7 cut(s) 466, 531, 1105, 2549, 2807, 3154, 3258
BssAI RCCGGY 3 cut(s) 743, 997, 1482
BssNAI GTATAC 1 cut(s) 1602
BssSI CACGAG 3 cut(s) 2025, 2281, 2317
BssT1I CCWWGG 7 cut(s) 423, 775, 1560, 2163, 2689, 3169, 3285
Bst1107I GTATAC 1 cut(s) 1602
Bst2BI CACGAG 3 cut(s) 2025, 2281, 2317
Bst2UI CCWGG 2 cut(s) 1419, 2189
Bst6I CTCTTC 5 cut(s) 702, 1140, 1624, 1943, 1986
BstAFI CTTAAG 1 cut(s) 89
BstAUI TGTACA 2 cut(s) 1182, 1611
BstBAI YACGTR 1 cut(s) 1599
BstBI TTCGAA 2 cut(s) 364, 1929
BstDSI CCRYGG 2 cut(s) 2163, 3285
BstEII GGTNACC 1 cut(s) 2665
BstENI CCTNNNNNAGG 3 cut(s) 2127, 2709, 2875
BstF5I GGATG 7 cut(s) 88, 230, 343, 436, 2566, 2673, 3322
BstFNI CGCG 2 cut(s) 1430, 2463
BstH2I RGCGCY 2 cut(s) 553, 715
BstHHI GCGC 2 cut(s) 552, 714
BstMAI GTCTC 7 cut(s) 351, 1027, 1115, 2082, 2484, 2814, 3030
BstMWI GCNNNNNNNGC 8 cut(s) 740, 1433, 1448, 1750, 1759, 2460, 2494, 2834
BstNI CCWGG 2 cut(s) 1419, 2189
BstNSI RCATGY 2 cut(s) 1066, 1834
BstPAI GACNNNNGTC 1 cut(s) 3042
BstPI GGTNACC 1 cut(s) 2665
BstSCI CCNGG 5 cut(s) 609, 610, 1417, 2187, 2401
BstSFI CTRYAG 4 cut(s) 872, 1158, 1453, 1520
BstSNI TACGTA 1 cut(s) 1599
BstUI CGCG 2 cut(s) 1430, 2463
BstV1I GCAGC 9 cut(s) 250, 274, 752, 978, 1105, 1277, 1401, 1554, 2530
BstV2I GAAGAC 4 cut(s) 670, 1101, 1239, 1863
BstX2I RGATCY 1 cut(s) 2378
BstYI RGATCY 1 cut(s) 2378
BstZ17I GTATAC 1 cut(s) 1602
BsuI GTATCC 1 cut(s) 213
BsuRI GGCC 6 cut(s) 229, 1565, 2228, 2264, 2694, 3066
BtgI CCRYGG 2 cut(s) 2163, 3285
BtgZI GCGATG 3 cut(s) 662, 2301, 2809
BtrI CACGTC 1 cut(s) 3215
BtsCI GGATG 7 cut(s) 88, 230, 343, 436, 2566, 2673, 3322
BtsI GCAGTG 1 cut(s) 1157
BtsIMutI CAGTG 5 cut(s) 1157, 1225, 1621, 2353, 2814
BveI ACCTGC 2 cut(s) 865, 1877
CaiI CAGNNNCTG 3 cut(s) 287, 2381, 2555
CciI TCATGA 1 cut(s) 2605
CfoI GCGC 2 cut(s) 552, 714
Cfr10I RCCGGY 3 cut(s) 743, 997, 1482
Cfr13I GGNCC 6 cut(s) 9, 764, 1511, 1529, 2030, 2693
Cfr9I CCCGGG 1 cut(s) 610
DraI TTTAAA 1 cut(s) 898
DriI GACNNNNNGTC 1 cut(s) 927
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 5 cut(s) 702, 1140, 1624, 1943, 1986
Eam1105I GACNNNNNGTC 1 cut(s) 927
EarI CTCTTC 5 cut(s) 702, 1140, 1624, 1943, 1986
EciI GGCGGA 1 cut(s) 2916
Eco105I TACGTA 1 cut(s) 1599
Eco130I CCWWGG 7 cut(s) 423, 775, 1560, 2163, 2689, 3169, 3285
Eco147I AGGCCT 1 cut(s) 3066
Eco24I GRGCYC 1 cut(s) 2870
Eco31I GGTCTC 1 cut(s) 2082
Eco32I GATATC 3 cut(s) 328, 1243, 2908
Eco47I GGWCC 5 cut(s) 9, 764, 1511, 1529, 2030
Eco47III AGCGCT 1 cut(s) 713
Eco57I CTGAAG 4 cut(s) 1280, 2172, 2556, 2838
Eco88I CYCGRG 3 cut(s) 41, 610, 1881
Eco91I GGTNACC 1 cut(s) 2665
EcoNI CCTNNNNNAGG 3 cut(s) 2127, 2709, 2875
EcoO109I RGGNCCY 2 cut(s) 9, 1529
EcoO65I GGTNACC 1 cut(s) 2665
EcoRII CCWGG 2 cut(s) 1417, 2187
EcoRV GATATC 3 cut(s) 328, 1243, 2908
EcoT14I CCWWGG 7 cut(s) 423, 775, 1560, 2163, 2689, 3169, 3285
EcoT22I ATGCAT 1 cut(s) 1791
EcoT38I GRGCYC 1 cut(s) 2870
ErhI CCWWGG 7 cut(s) 423, 775, 1560, 2163, 2689, 3169, 3285
FaqI GGGAC 5 cut(s) 593, 777, 1542, 1961, 2608
FauNDI CATATG 2 cut(s) 1356, 2739
FbaI TGATCA 4 cut(s) 61, 2062, 2140, 2422
FblI GTMKAC 1 cut(s) 1601
FokI GGATG 7 cut(s) 95, 237, 350, 443, 2553, 2660, 3329
FriOI GRGCYC 1 cut(s) 2870
FspBI CTAG 8 cut(s) 251, 1166, 1554, 2090, 2627, 2721, 2877, 3299
GlaI GCGC 2 cut(s) 551, 713
GsuI CTGGAG 2 cut(s) 1088, 2019
HaeII RGCGCY 2 cut(s) 553, 715
HaeIII GGCC 6 cut(s) 229, 1565, 2228, 2264, 2694, 3066
HapII CCGG 7 cut(s) 179, 611, 744, 998, 1386, 1483, 2402
HhaI GCGC 2 cut(s) 552, 714
Hin6I GCGC 2 cut(s) 550, 712
HinP1I GCGC 2 cut(s) 550, 712
HincII GTYRAC 2 cut(s) 241, 2718
HindII GTYRAC 2 cut(s) 241, 2718
HindIII AAGCTT 3 cut(s) 1345, 2331, 2698
HpaII CCGG 7 cut(s) 179, 611, 744, 998, 1386, 1483, 2402
Hpy166II GTNNAC 6 cut(s) 241, 414, 1155, 1602, 1612, 2718
Hpy8I GTNNAC 6 cut(s) 241, 414, 1155, 1602, 1612, 2718
Hpy99I CGWCG 1 cut(s) 1989
HpyCH4IV ACGT 4 cut(s) 783, 1302, 1598, 3214
HpyF10VI GCNNNNNNNGC 8 cut(s) 740, 1433, 1448, 1750, 1759, 2460, 2494, 2834
HpySE526I ACGT 4 cut(s) 783, 1302, 1598, 3214
HspAI GCGC 2 cut(s) 550, 712
KroI GCCGGC 1 cut(s) 743
KroNI GCCGGC 1 cut(s) 745
Ksp22I TGATCA 4 cut(s) 61, 2062, 2140, 2422
LguI GCTCTTC 2 cut(s) 702, 1140
LmnI GCTCC 6 cut(s) 43, 913, 1060, 1360, 1726, 3205
Lsp1109I GCAGC 9 cut(s) 250, 274, 752, 978, 1105, 1277, 1401, 1554, 2530
LweI GCATC 6 cut(s) 639, 1266, 1358, 1708, 2362, 2575
MaeI CTAG 8 cut(s) 251, 1166, 1554, 2090, 2627, 2721, 2877, 3299
MaeII ACGT 4 cut(s) 783, 1302, 1598, 3214
MbiI CCGCTC 1 cut(s) 2817
MfeI CAATTG 1 cut(s) 729
MflI RGATCY 1 cut(s) 2378
MhlI GDGCHC 2 cut(s) 1731, 2870
MlsI TGGCCA 1 cut(s) 229
MluNI TGGCCA 1 cut(s) 229
MlyI GAGTC 6 cut(s) 353, 488, 852, 937, 1815, 2786
Mox20I TGGCCA 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 1791
MroNI GCCGGC 1 cut(s) 743
MroXI GAANNNNTTC 3 cut(s) 1082, 2157, 3116
MscI TGGCCA 1 cut(s) 229
MseI TTAA 9 cut(s) 90, 537, 897, 905, 1329, 2786, 2961, 3069, 3095
Msp20I TGGCCA 1 cut(s) 229
MspA1I CMGCKG 1 cut(s) 1414
MspCI CTTAAG 1 cut(s) 89
MspI CCGG 7 cut(s) 179, 611, 744, 998, 1386, 1483, 2402
MspR9I CCNGG 5 cut(s) 611, 612, 1419, 2189, 2403
MunI CAATTG 1 cut(s) 729
Mva1269I GAATGC 3 cut(s) 1429, 1438, 1921
MvaI CCWGG 2 cut(s) 1419, 2189
MvnI CGCG 2 cut(s) 1430, 2463
MwoI GCNNNNNNNGC 8 cut(s) 740, 1433, 1448, 1750, 1759, 2460, 2494, 2834
NaeI GCCGGC 1 cut(s) 745
NciI CCSGG 3 cut(s) 611, 612, 2403
NcoI CCATGG 2 cut(s) 2163, 3285
NdeI CATATG 2 cut(s) 1356, 2739
NgoMIV GCCGGC 1 cut(s) 743
NheI GCTAGC 1 cut(s) 1553
NlaIV GGNNCC 7 cut(s) 11, 39, 466, 765, 915, 1530, 1624
NmuCI GTSAC 5 cut(s) 779, 844, 2180, 2266, 2665
NsiI ATGCAT 1 cut(s) 1791
NspI RCATGY 2 cut(s) 1066, 1834
NspV TTCGAA 2 cut(s) 364, 1929
PaeI GCATGC 1 cut(s) 1834
PagI TCATGA 1 cut(s) 2605
PaqCI CACCTGC 1 cut(s) 1877
PceI AGGCCT 1 cut(s) 3066
PciSI GCTCTTC 2 cut(s) 702, 1140
PcsI WCGNNNNNNNCGW 1 cut(s) 1993
PctI GAATGC 3 cut(s) 1429, 1438, 1921
PdiI GCCGGC 1 cut(s) 745
PdmI GAANNNNTTC 3 cut(s) 1082, 2157, 3116
PfeI GAWTC 7 cut(s) 270, 373, 626, 2057, 2096, 3089, 3302
PleI GAGTC 6 cut(s) 352, 488, 851, 936, 1814, 2785
PpsI GAGTC 6 cut(s) 352, 488, 851, 936, 1814, 2785
Ppu21I YACGTR 1 cut(s) 1599
PpuMI RGGWCCY 2 cut(s) 9, 1529
PshAI GACNNNNGTC 1 cut(s) 3042
PsiI TTATAA 1 cut(s) 2510
Psp5II RGGWCCY 2 cut(s) 9, 1529
Psp6I CCWGG 2 cut(s) 1417, 2187
PspEI GGTNACC 1 cut(s) 2665
PspGI CCWGG 2 cut(s) 1417, 2187
PspN4I GGNNCC 7 cut(s) 11, 39, 466, 765, 915, 1530, 1624
PspPI GGNCC 6 cut(s) 9, 764, 1511, 1529, 2030, 2693
PspPPI RGGWCCY 2 cut(s) 9, 1529
PstI CTGCAG 1 cut(s) 876
PstNI CAGNNNCTG 3 cut(s) 287, 2381, 2555
PsuI RGATCY 1 cut(s) 2378
PvuII CAGCTG 1 cut(s) 1414
SapI GCTCTTC 2 cut(s) 702, 1140
SaqAI TTAA 9 cut(s) 90, 537, 897, 905, 1329, 2786, 2961, 3069, 3095
Sau96I GGNCC 6 cut(s) 9, 764, 1511, 1529, 2030, 2693
ScaI AGTACT 2 cut(s) 2157, 2590
SchI GAGTC 6 cut(s) 353, 488, 852, 937, 1815, 2786
ScrFI CCNGG 5 cut(s) 611, 612, 1419, 2189, 2403
SduI GDGCHC 2 cut(s) 1731, 2870
SfaNI GCATC 6 cut(s) 639, 1266, 1358, 1708, 2362, 2575
SfcI CTRYAG 4 cut(s) 872, 1158, 1453, 1520
SfuI TTCGAA 2 cut(s) 364, 1929
SinI GGWCC 5 cut(s) 9, 764, 1511, 1529, 2030
SmaI CCCGGG 1 cut(s) 612
SmlI CTYRAG 9 cut(s) 77, 89, 137, 1825, 2045, 2079, 2498, 3218, 3240
SmoI CTYRAG 9 cut(s) 77, 89, 137, 1825, 2045, 2079, 2498, 3218, 3240
SnaBI TACGTA 1 cut(s) 1599
SpeI ACTAGT 1 cut(s) 2720
SphI GCATGC 1 cut(s) 1834
SseBI AGGCCT 1 cut(s) 3066
SspMI CTAG 8 cut(s) 251, 1166, 1554, 2090, 2627, 2721, 2877, 3299
StuI AGGCCT 1 cut(s) 3066
StyD4I CCNGG 5 cut(s) 609, 610, 1417, 2187, 2401
StyI CCWWGG 7 cut(s) 423, 775, 1560, 2163, 2689, 3169, 3285
TaiI ACGT 4 cut(s) 786, 1305, 1601, 3217
TaqI TCGA 7 cut(s) 364, 1929, 1987, 2196, 2304, 2758, 2926
TatI WGTACW 5 cut(s) 1154, 1182, 1611, 2155, 2588
TauI GCSGC 6 cut(s) 555, 997, 1282, 1430, 1837, 2901
TfiI GAWTC 7 cut(s) 270, 373, 626, 2057, 2096, 3089, 3302
Tru1I TTAA 9 cut(s) 90, 537, 897, 905, 1329, 2786, 2961, 3069, 3095
Tru9I TTAA 9 cut(s) 90, 537, 897, 905, 1329, 2786, 2961, 3069, 3095
TscAI CASTG 5 cut(s) 1157, 1225, 1621, 2353, 2814
TseFI GTSAC 5 cut(s) 779, 844, 2180, 2266, 2665
TseI GCWGC 9 cut(s) 263, 287, 740, 966, 1093, 1290, 1414, 1542, 2518
Tsp45I GTSAC 5 cut(s) 779, 844, 2180, 2266, 2665
TspGWI ACGGA 5 cut(s) 292, 341, 457, 1200, 1818
TspMI CCCGGG 1 cut(s) 610
TspRI CASTG 5 cut(s) 1157, 1225, 1621, 2353, 2814
Vha464I CTTAAG 1 cut(s) 89
VpaK11BI GGWCC 5 cut(s) 9, 764, 1511, 1529, 2030
XagI CCTNNNNNAGG 3 cut(s) 2127, 2709, 2875
XapI RAATTY 2 cut(s) 2847, 3112
XceI RCATGY 2 cut(s) 1066, 1834
XcmI CCANNNNNNNNNTGG 2 cut(s) 1546, 3008
XmaI CCCGGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 1601
XmnI GAANNNNTTC 3 cut(s) 1082, 2157, 3116
XspI CTAG 8 cut(s) 251, 1166, 1554, 2090, 2627, 2721, 2877, 3299
ZrmI AGTACT 2 cut(s) 2157, 2590
Zsp2I ATGCAT 1 cut(s) 1791
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.