Rroxscaffold_5G00341080

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000153
Physical Location & Seq
Forward (+)
9580094 .. 9581796
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00341080.1

Sequence Viewer

Length: 900 bp
ATGGCTCAAGCGTACGAGTCTTCTCAACCTATTGAAATTCGTGACCACCACTTCTCTCTTGAGGATGGTCTCGTTCCTACTTCCACCACGAGGAATTGTGAAGGTAGCTCGGAGGAGGCATCTCGTGAATTTTCTGGGCACTTTGTTTCTCCCAAGTTCATATTCAGATGGAGTCTTGAAACTCACACATTCATCTGCTCTTGGGGGGAATTTACTCCTTCTCTAGAAGATGTTTGCAATATTATGAGAATCCCGATTGTTGGAGATGCAGCAAGTCTTCCCACCGACCATTATGCTAGCAGCCGACACTTGTTTCTGCTTGCTCCTCTCTTCCTCGATCACCTATATAGGAAGCTTGATAAGATTTCGAAGGATGATAAAGAAGATGCGGGGCGATGGTTCAGAAGGAAGGCCAAGAAGGGTGCATTTAGGCCTGCTGTTTTGGATGACATTAGGCAATTCAATTTCAGACCATATTTTACTGCTCACGGCTTCCGGACATTCCCTTTCTTTTATCCGGAGGGTAACTCATCACCGTTCTTGGAATCGGTTGAGCTACTTCTAACCACTAGTGCGATATGCCATCGCATCTATCTTACGGTGGACATCTTGGGGATTGCATCATGGGTTTCACTCGGACGGACGGTATTTCTTGCGGGGGGAGGTTTATTCGGGCTGGTGGGACTAGGTTATGTCCAAAAGCCAATAGCGAGAACAAGAGATCGCTCCGCGATAGCCTTTGTCATGGGTGTCATGTCTAGACTTAACCTTCCCTATACCGAGGTATACTCGAATGGTATAAAGCGTGTGGTTGGTCACCTCGAGGGTGGCAAAGGTAGAGATGATTCCCTAGTGGAGTCCCCAAAAATGTGGGGTTCTTTTCGAACTAAGCAAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

299

Amino Acids

33.8

Weight (kDa)

8.3

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 54 - 95 1.9e-07 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 821
AccI GTMKAC 1 cut(s) 786
AccII CGCG 1 cut(s) 731
AccIII TCCGGA 2 cut(s) 495, 517
AciI CCGC 3 cut(s) 389, 656, 729
AcsI RAATTY 3 cut(s) 36, 128, 209
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 90, 260
AgsI TTSAA 3 cut(s) 35, 179, 463
AhlI ACTAGT 1 cut(s) 569
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 3 cut(s) 108, 355, 556
AluI AGCT 3 cut(s) 108, 355, 556
Alw26I GTCTC 1 cut(s) 74
Ama87I CYCGRG 1 cut(s) 821
Aor13HI TCCGGA 2 cut(s) 495, 517
AoxI GGCC 2 cut(s) 411, 431
ApeKI GCWGC 2 cut(s) 269, 300
ApoI RAATTY 3 cut(s) 36, 128, 209
AsuHPI GGTGA 3 cut(s) 332, 525, 809
AsuII TTCGAA 2 cut(s) 368, 883
AsuNHI GCTAGC 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 821
BaeGI GKGCMC 1 cut(s) 141
BauI CACGAG 2 cut(s) 88, 123
BbsI GAAGAC 2 cut(s) 12, 269
BbvI GCAGC 2 cut(s) 281, 312
BccI CCATC 4 cut(s) 59, 162, 390, 591
BceAI ACGGC 1 cut(s) 505
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BcoDI GTCTC 1 cut(s) 74
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 7 cut(s) 224, 297, 570, 686, 759, 851, 898
BisI GCNGC 2 cut(s) 270, 301
BlsI GCNGC 2 cut(s) 271, 302
BmeT110I CYCGRG 1 cut(s) 821
BmsI GCATC 5 cut(s) 128, 256, 376, 597, 629
BmtI GCTAGC 1 cut(s) 300
BpiI GAAGAC 2 cut(s) 12, 269
BplI GAGNNNNNCTC 4 cut(s) 512, 544, 773, 805
Bpu14I TTCGAA 2 cut(s) 368, 883
BpuEI CTTGAG 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 780
BsaWI WCCGGW 2 cut(s) 495, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 260
BseAI TCCGGA 2 cut(s) 495, 517
BseDI CCNNGG 1 cut(s) 780
BseGI GGATG 3 cut(s) 70, 379, 451
BseLI CCNNNNNNNGG 2 cut(s) 90, 260
BseRI GAGGAG 2 cut(s) 128, 315
BseSI GKGCMC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 281, 312
Bsh1236I CGCG 1 cut(s) 731
BshFI GGCC 2 cut(s) 413, 433
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 2 cut(s) 496, 518
BsiWI CGTACG 1 cut(s) 12
BslFI GGGAC 2 cut(s) 696, 844
BslI CCNNNNNNNGG 2 cut(s) 90, 260
BsmAI GTCTC 1 cut(s) 74
BsmFI GGGAC 2 cut(s) 696, 844
BsnI GGCC 2 cut(s) 413, 433
Bso31I GGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 821
Bsp119I TTCGAA 2 cut(s) 368, 883
Bsp1286I GDGCHC 1 cut(s) 141
Bsp13I TCCGGA 2 cut(s) 495, 517
Bsp143I GATC 2 cut(s) 337, 721
BspACI CCGC 3 cut(s) 389, 656, 729
BspANI GGCC 2 cut(s) 413, 433
BspEI TCCGGA 2 cut(s) 495, 517
BspFNI CGCG 1 cut(s) 731
BspOI GCTAGC 1 cut(s) 300
BspT104I TTCGAA 2 cut(s) 368, 883
BspTNI GGTCTC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 2 cut(s) 337, 721
BssNAI GTATAC 1 cut(s) 787
BssSI CACGAG 2 cut(s) 88, 123
Bst1107I GTATAC 1 cut(s) 787
Bst2BI CACGAG 2 cut(s) 88, 123
Bst4CI ACNGT 3 cut(s) 537, 601, 646
Bst6I CTCTTC 1 cut(s) 335
BstBI TTCGAA 2 cut(s) 368, 883
BstC8I GCNNGC 3 cut(s) 298, 321, 435
BstDEI CTNAG 1 cut(s) 888
BstEII GGTNACC 1 cut(s) 815
BstF5I GGATG 3 cut(s) 70, 379, 451
BstFNI CGCG 1 cut(s) 731
BstKTI GATC 2 cut(s) 340, 724
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 337, 721
BstPI GGTNACC 1 cut(s) 815
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 1 cut(s) 731
BstV1I GCAGC 2 cut(s) 281, 312
BstV2I GAAGAC 2 cut(s) 12, 269
BstXI CCANNNNNNTGG 1 cut(s) 870
BstZ17I GTATAC 1 cut(s) 787
BsuRI GGCC 2 cut(s) 413, 433
BtgZI GCGATG 2 cut(s) 409, 569
BtsCI GGATG 3 cut(s) 70, 379, 451
Cac8I GCNNGC 3 cut(s) 298, 321, 435
Csp6I GTAC 1 cut(s) 13
CviAII CATG 3 cut(s) 624, 745, 754
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 888
DpnI GATC 2 cut(s) 339, 723
DpnII GATC 2 cut(s) 337, 721
Eam1104I CTCTTC 1 cut(s) 335
EarI CTCTTC 1 cut(s) 335
Eco147I AGGCCT 1 cut(s) 433
Eco31I GGTCTC 1 cut(s) 74
Eco88I CYCGRG 1 cut(s) 821
Eco91I GGTNACC 1 cut(s) 815
EcoO65I GGTNACC 1 cut(s) 815
FaeI CATG 3 cut(s) 627, 748, 757
FaqI GGGAC 2 cut(s) 696, 844
FatI CATG 3 cut(s) 623, 744, 753
FauI CCCGC 2 cut(s) 382, 649
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 2 cut(s) 270, 301
FokI GGATG 3 cut(s) 77, 386, 458
Fsp4HI GCNGC 2 cut(s) 270, 301
FspBI CTAG 7 cut(s) 224, 297, 570, 686, 759, 851, 898
GluI GCNGC 2 cut(s) 270, 301
HaeIII GGCC 2 cut(s) 413, 433
HapII CCGG 2 cut(s) 496, 518
Hin1II CATG 3 cut(s) 627, 748, 757
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 6 cut(s) 17, 172, 249, 545, 845, 857
HpaII CCGG 2 cut(s) 496, 518
HphI GGTGA 3 cut(s) 332, 525, 809
Hpy166II GTNNAC 2 cut(s) 604, 787
Hpy188I TCNGA 5 cut(s) 112, 167, 404, 470, 638
Hpy188III TCNNGA 9 cut(s) 41, 59, 125, 176, 224, 253, 496, 518, 759
Hpy8I GTNNAC 2 cut(s) 604, 787
HpyAV CCTTC 7 cut(s) 95, 228, 364, 399, 403, 412, 779
HpyCH4III ACNGT 3 cut(s) 537, 601, 646
HpyCH4V TGCA 4 cut(s) 237, 269, 425, 620
HpyF3I CTNAG 1 cut(s) 888
Hsp92II CATG 3 cut(s) 627, 748, 757
Kpn2I TCCGGA 2 cut(s) 495, 517
Kzo9I GATC 2 cut(s) 337, 721
LmnI GCTCC 2 cut(s) 328, 731
LpnPI CCDG 5 cut(s) 120, 447, 509, 531, 662
Lsp1109I GCAGC 2 cut(s) 281, 312
LweI GCATC 5 cut(s) 128, 256, 376, 597, 629
MaeI CTAG 7 cut(s) 224, 297, 570, 686, 759, 851, 898
MaeIII GTNAC 3 cut(s) 41, 524, 815
MalI GATC 2 cut(s) 339, 723
MboI GATC 2 cut(s) 337, 721
MboII GAAGA 5 cut(s) 12, 239, 269, 322, 395
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 6 cut(s) 36, 94, 128, 209, 458, 463
MlyI GAGTC 3 cut(s) 26, 181, 866
MmeI TCCRAC 1 cut(s) 241
MroI TCCGGA 2 cut(s) 495, 517
MseI TTAA 1 cut(s) 765
MspI CCGG 2 cut(s) 496, 518
MvnI CGCG 1 cut(s) 731
NdeII GATC 2 cut(s) 337, 721
NheI GCTAGC 1 cut(s) 296
NlaIII CATG 3 cut(s) 627, 748, 757
NmuCI GTSAC 2 cut(s) 41, 815
NspV TTCGAA 2 cut(s) 368, 883
PaeR7I CTCGAG 1 cut(s) 821
PceI AGGCCT 1 cut(s) 433
PfeI GAWTC 3 cut(s) 249, 545, 845
Pfl23II CGTACG 1 cut(s) 12
PkrI GCNGC 2 cut(s) 271, 302
PleI GAGTC 3 cut(s) 25, 180, 865
PpsI GAGTC 3 cut(s) 25, 180, 865
PspEI GGTNACC 1 cut(s) 815
PspLI CGTACG 1 cut(s) 12
PspXI VCTCGAGB 1 cut(s) 821
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 2 cut(s) 270, 301
Sau3AI GATC 2 cut(s) 337, 721
SchI GAGTC 3 cut(s) 26, 181, 866
SduI GDGCHC 1 cut(s) 141
SfaNI GCATC 5 cut(s) 128, 256, 376, 597, 629
Sfr274I CTCGAG 1 cut(s) 821
SfuI TTCGAA 2 cut(s) 368, 883
SlaI CTCGAG 1 cut(s) 821
SmlI CTYRAG 3 cut(s) 6, 59, 821
SmoI CTYRAG 3 cut(s) 6, 59, 821
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 6 cut(s) 36, 94, 128, 209, 458, 463
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 3 cut(s) 389, 656, 729
SspI AATATT 1 cut(s) 241
SspMI CTAG 7 cut(s) 224, 297, 570, 686, 759, 851, 898
StuI AGGCCT 1 cut(s) 433
TaaI ACNGT 3 cut(s) 537, 601, 646
TaqI TCGA 5 cut(s) 336, 368, 791, 822, 883
TasI AATT 6 cut(s) 36, 94, 128, 209, 458, 463
TfiI GAWTC 3 cut(s) 249, 545, 845
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TseFI GTSAC 2 cut(s) 41, 815
TseI GCWGC 2 cut(s) 269, 300
Tsp45I GTSAC 2 cut(s) 41, 815
TspDTI ATGAA 2 cut(s) 148, 181
TspGWI ACGGA 1 cut(s) 655
XapI RAATTY 3 cut(s) 36, 128, 209
XbaI TCTAGA 2 cut(s) 223, 758
XhoI CTCGAG 1 cut(s) 821
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 7 cut(s) 224, 297, 570, 686, 759, 851, 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.