Rmu_ssc0000388.1_g000018

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
OG0000153
Physical Location & Seq
Reverse (-)
76520 .. 78407
1888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000388.1_g000018.1.cds

Sequence Viewer

Length: 726 bp
atgtctagacttaaccttccctatactgaggtatatttgaatggcatgaagtgtgtggttggtcatctcaagggtggcaaagatggaggtgattccaaagtagagttgccagctgctagaatggagaagggtggcaagagcgtggcaaaggatcgcatccctcctccagtaatcaagagtgcctttggtgtcaaagtgatactgccatcgagtttggctggtgaaaaagggaagaagaggaaagctgcttctaccttgagacggcgtggggttactaagagaaaggttacagatgatgcctcacctgctgtcctcaggcagagctctcgcgttgctaacatgagtttttctaaacctaaactgtcgtctaaggtcgctgctcatgttgatcgtagtgacgcgccaagtgacgacatcgaaggtagcccccttagtgataatgtcagtacacatgaggagaatgaatctgatacttatgagggagagacatgcgatgatattggagggacatcatttgagccccatctccctgagacagcactgggggacgaaggcgttactgctgcaatcttggtcagtatagggattccgctgaagtttattgcttactttgacaatgaggatcgcttgagtatcactattgatgatattgcacgcccattgagcggtatccgatcttcatttgagggtgggaaagttccttcagttcgtggttccactcactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

25.68

Weight (kDa)

8.43

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 666
AccII CGCG 2 cut(s) 330, 401
AciI CCGC 2 cut(s) 590, 666
AclWI GGATC 2 cut(s) 159, 630
AcuI CTGAAG 2 cut(s) 614, 687
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 2 cut(s) 261, 665
AgsI TTSAA 1 cut(s) 40
AluBI AGCT 3 cut(s) 113, 245, 324
AluI AGCT 3 cut(s) 113, 245, 324
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 3 cut(s) 253, 479, 527
AlwI GGATC 2 cut(s) 159, 630
ApeKI GCWGC 4 cut(s) 113, 245, 377, 563
AspLEI GCGC 1 cut(s) 403
AsuHPI GGTGA 3 cut(s) 101, 233, 294
AxyI CCTNAGG 1 cut(s) 314
BanII GRGCYC 2 cut(s) 326, 522
BarI GAAGNNNNNNTAC 2 cut(s) 661, 693
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 4 cut(s) 100, 232, 364, 550
BccI CCATC 3 cut(s) 77, 214, 531
BceAI ACGGC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciVI GTATCC 1 cut(s) 680
BcoDI GTCTC 3 cut(s) 253, 479, 527
BfaI CTAG 2 cut(s) 6, 117
BfuAI ACCTGC 1 cut(s) 313
BfuI GTATCC 1 cut(s) 680
BisI GCNGC 4 cut(s) 114, 246, 378, 564
BlsI GCNGC 4 cut(s) 115, 247, 379, 565
BmiI GGNNCC 1 cut(s) 715
BmrI ACTGGG 1 cut(s) 551
BmsI GCATC 2 cut(s) 165, 286
BmuI ACTGGG 1 cut(s) 551
BpmI CTGGAG 1 cut(s) 150
BpuEI CTTGAG 3 cut(s) 53, 277, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 665
Bse1I ACTGG 2 cut(s) 167, 546
Bse21I CCTNAGG 1 cut(s) 314
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 261, 665
BseMII CTCAG 3 cut(s) 18, 328, 522
BseNI ACTGG 2 cut(s) 167, 546
BseRI GAGGAG 2 cut(s) 153, 470
BseXI GCAGC 4 cut(s) 100, 232, 364, 550
Bsh1236I CGCG 2 cut(s) 330, 401
BsiHKAI GWGCWC 1 cut(s) 326
BslFI GGGAC 2 cut(s) 520, 560
BslI CCNNNNNNNGG 2 cut(s) 261, 665
BsmAI GTCTC 3 cut(s) 253, 479, 527
BsmBI CGTCTC 1 cut(s) 253
BsmFI GGGAC 2 cut(s) 520, 560
Bsp1286I GDGCHC 2 cut(s) 326, 522
Bsp143I GATC 4 cut(s) 151, 388, 622, 674
BspACI CCGC 2 cut(s) 590, 666
BspCNI CTCAG 3 cut(s) 19, 327, 523
BspFNI CGCG 2 cut(s) 330, 401
BspLI GGNNCC 1 cut(s) 715
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 2 cut(s) 159, 630
BsrBI CCGCTC 1 cut(s) 666
BsrI ACTGG 2 cut(s) 167, 546
BssMI GATC 4 cut(s) 151, 388, 622, 674
Bst4CI ACNGT 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 230
BstC8I GCNNGC 2 cut(s) 111, 655
BstDEI CTNAG 6 cut(s) 27, 276, 314, 369, 431, 531
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 2 cut(s) 330, 401
BstHHI GCGC 1 cut(s) 403
BstKTI GATC 4 cut(s) 154, 391, 625, 677
BstMAI GTCTC 3 cut(s) 253, 479, 527
BstMBI GATC 4 cut(s) 151, 388, 622, 674
BstMWI GCNNNNNNNGC 2 cut(s) 305, 663
BstNSI RCATGY 1 cut(s) 492
BstUI CGCG 2 cut(s) 330, 401
BstV1I GCAGC 4 cut(s) 100, 232, 364, 550
Bsu36I CCTNAGG 1 cut(s) 314
BsuI GTATCC 1 cut(s) 680
BtgZI GCGATG 1 cut(s) 507
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 539
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 2 cut(s) 111, 655
CfoI GCGC 1 cut(s) 403
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 447
CviAII CATG 5 cut(s) 46, 340, 383, 452, 489
CviJI RGCY 6 cut(s) 113, 218, 245, 324, 426, 520
CviKI_1 RGCY 6 cut(s) 113, 218, 245, 324, 426, 520
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 6 cut(s) 27, 276, 314, 369, 431, 531
DpnI GATC 4 cut(s) 153, 390, 624, 676
DpnII GATC 4 cut(s) 151, 388, 622, 674
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 324
Eco24I GRGCYC 2 cut(s) 326, 522
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 2 cut(s) 614, 687
Eco81I CCTNAGG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 324
EcoT38I GRGCYC 2 cut(s) 326, 522
Esp3I CGTCTC 1 cut(s) 253
FaeI CATG 5 cut(s) 49, 343, 386, 455, 492
FaiI YATR 9 cut(s) 24, 34, 47, 341, 384, 453, 477, 490, 581
FalI AAGNNNNNCTT 2 cut(s) 167, 199
FaqI GGGAC 2 cut(s) 520, 560
FatI CATG 5 cut(s) 45, 339, 382, 451, 488
Fnu4HI GCNGC 4 cut(s) 114, 246, 378, 564
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 2 cut(s) 326, 522
Fsp4HI GCNGC 4 cut(s) 114, 246, 378, 564
FspBI CTAG 2 cut(s) 6, 117
GlaI GCGC 1 cut(s) 402
GluI GCNGC 4 cut(s) 114, 246, 378, 564
GsuI CTGGAG 1 cut(s) 150
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 403
Hin1II CATG 5 cut(s) 49, 343, 386, 455, 492
Hin6I GCGC 1 cut(s) 401
HinP1I GCGC 1 cut(s) 401
HinfI GANTC 3 cut(s) 92, 464, 586
HphI GGTGA 3 cut(s) 101, 233, 294
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 469, 674
Hpy188III TCNNGA 2 cut(s) 6, 175
Hpy8I GTNNAC 1 cut(s) 449
HpyAV CCTTC 5 cut(s) 26, 121, 413, 545, 711
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 566, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 305, 663
HpyF3I CTNAG 6 cut(s) 27, 276, 314, 369, 431, 531
Hsp92II CATG 5 cut(s) 49, 343, 386, 455, 492
HspAI GCGC 1 cut(s) 401
Kzo9I GATC 4 cut(s) 151, 388, 622, 674
LpnPI CCDG 7 cut(s) 123, 180, 204, 301, 318, 527, 543
Lsp1109I GCAGC 4 cut(s) 100, 232, 364, 550
LweI GCATC 2 cut(s) 165, 286
MaeI CTAG 2 cut(s) 6, 117
MaeIII GTNAC 5 cut(s) 271, 286, 395, 407, 556
MalI GATC 4 cut(s) 153, 390, 624, 676
MbiI CCGCTC 1 cut(s) 666
MboI GATC 4 cut(s) 151, 388, 622, 674
MboII GAAGA 3 cut(s) 244, 247, 669
MhlI GDGCHC 2 cut(s) 326, 522
MseI TTAA 1 cut(s) 12
MspA1I CMGCKG 2 cut(s) 113, 592
MvnI CGCG 2 cut(s) 330, 401
MwoI GCNNNNNNNGC 2 cut(s) 305, 663
NdeII GATC 4 cut(s) 151, 388, 622, 674
NlaIII CATG 5 cut(s) 49, 343, 386, 455, 492
NlaIV GGNNCC 1 cut(s) 715
NmuCI GTSAC 2 cut(s) 395, 407
NspI RCATGY 1 cut(s) 492
PaqCI CACCTGC 1 cut(s) 313
PfeI GAWTC 3 cut(s) 92, 464, 586
PkrI GCNGC 4 cut(s) 115, 247, 379, 565
Psp124BI GAGCTC 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 715
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
SacI GAGCTC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 4 cut(s) 114, 246, 378, 564
Sau3AI GATC 4 cut(s) 151, 388, 622, 674
SduI GDGCHC 2 cut(s) 326, 522
SfaNI GCATC 2 cut(s) 165, 286
SmlI CTYRAG 3 cut(s) 68, 256, 628
SmoI CTYRAG 3 cut(s) 68, 256, 628
SsiI CCGC 2 cut(s) 590, 666
SspMI CTAG 2 cut(s) 6, 117
SstI GAGCTC 1 cut(s) 326
TaaI ACNGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 209, 417
TatI WGTACW 1 cut(s) 446
TfiI GAWTC 3 cut(s) 92, 464, 586
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 2 cut(s) 395, 407
TseI GCWGC 4 cut(s) 113, 245, 377, 563
Tsp45I GTSAC 2 cut(s) 395, 407
TspDTI ATGAA 3 cut(s) 62, 477, 669
TspRI CASTG 1 cut(s) 546
XbaI TCTAGA 1 cut(s) 5
XceI RCATGY 1 cut(s) 492
XspI CTAG 2 cut(s) 6, 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.