Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000153

Physical Location & Seq

Genomic Coordinates Forward (+)

44194731 .. 44196527

Gene Structure 1797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAAGTTGAAGATTCTTATGAAAGGAGATTACAACGTCAAAGGAAGTAGTCGCCGTTTTGCGAATTGGGTGATGCACTTTTGGGGAGTTATAGAGAATGGTGTGTTCCTTCCAAGTAAAGGTATCAATTCTGGCTGGCATTTGGAGGAGATGCTTGCTCTATGGTTAAAAAAGTTTGTTTTCATTGAATTCTCCTATGAGTACGCCGAACGGCGCGTGTTCCCTTTGGAGATTGCGGGTGGTGGCGAACTCTATCTAACCATTCGCCTAGATTTTATTTCATCTATAAGTGAGGATAAGGAGGCCTTGAATTTTCTTGCTATTGTTTATTCTCCCGACATAGTGATGAGGCGGTTTGGTTGTATTCAAGAGGTTCCTTCGTCTCCCCCTCGATCTCTTAACGCAAAGAATCGCTATCTTAGGGAAGTTGTTGATTTTGCTGGTAGAATTGCAGAACTTTGGTCTCAATTACCAGGAAACACCGTGAATGGTAATGTTTTCGATGCTTACGGTTTGTTATTAGAGAAGAGTGTTGTGCGAGGTTCAAGCTCTTTGTGGAAGCACAAAGGTTTTGAAGCTGGGAGCACGAAGAAAGAGGGAAAGAAGAACGGCAAGAAGGCAAGTGATAGGAGTATTGTGAGGAACACAACTCTCAAGAGCCTATTTGGCGCTTCAAGCCTAAAGTGGACTTTGATAAATCCATGCATACAACTCGTCATGAAGTCCAGGTACATTCTGTTTGTGAAGATAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006338 GO:0006355 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008283 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009736 GO:0009739 GO:0009755 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051239 GO:0051252 GO:0051253 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071840 GO:0080090 GO:0097159 GO:0099402 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905957 GO:1905958 GO:2000023 GO:2000026 GO:2000069 GO:2000112 GO:2000113 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

CHDCT2 Chromo DUF1086 DUF1087 Helicase_C PHD SNF2_N

Protein Analysis

251

Amino Acids

28.56

Weight (kDa)

9.78

Isoelectric Point (pI)

39.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000153)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis	RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata	RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora	Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii	Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa	Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha	Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana	Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	216
AciI	CCGC	2 cut(s)	236, 352
AcsI	RAATTY	2 cut(s)	188, 310
AfaI	GTAC	2 cut(s)	203, 731
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	7 cut(s)	10, 188, 310, 368, 546, 575, 675
AjnI	CCWGG	2 cut(s)	472, 725
AluBI	AGCT	2 cut(s)	549, 578
AluI	AGCT	2 cut(s)	549, 578
Alw21I	GWGCWC	1 cut(s)	587
Alw26I	GTCTC	2 cut(s)	387, 468
AoxI	GGCC	1 cut(s)	303
ApoI	RAATTY	2 cut(s)	188, 310
AspLEI	GCGC	2 cut(s)	216, 671
AsuHPI	GGTGA	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	713, 745
Bbv12I	GWGCWC	1 cut(s)	587
BceAI	ACGGC	3 cut(s)	39, 227, 625
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	2 cut(s)	474, 727
BcoDI	GTCTC	2 cut(s)	387, 468
BfaI	CTAG	1 cut(s)	269
BfoI	RGCGCY	1 cut(s)	672
BglI	GCCNNNNNGGC	1 cut(s)	666
Bme1390I	CCNGG	2 cut(s)	474, 727
BmiI	GGNNCC	1 cut(s)	375
BmrFI	CCNGG	2 cut(s)	474, 727
BmsI	GCATC	3 cut(s)	63, 141, 493
BpuEI	CTTGAG	1 cut(s)	638
BsaI	GGTCTC	1 cut(s)	468
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
BseBI	CCWGG	2 cut(s)	474, 727
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	161
BseYI	CCCAGC	1 cut(s)	578
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	305
BsiHKAI	GWGCWC	1 cut(s)	587
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	2 cut(s)	387, 468
BsmBI	CGTCTC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	587
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	2 cut(s)	236, 352
BspANI	GGCC	1 cut(s)	305
BspFNI	CGCG	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	717
BspLI	GGNNCC	1 cut(s)	375
BspTNI	GGTCTC	1 cut(s)	468
BssMI	GATC	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	474, 727
Bst4CI	ACNGT	2 cut(s)	484, 512
Bst6I	CTCTTC	1 cut(s)	521
BstC8I	GCNNGC	2 cut(s)	137, 156
BstDEI	CTNAG	1 cut(s)	419
BstFNI	CGCG	1 cut(s)	216
BstH2I	RGCGCY	1 cut(s)	672
BstHHI	GCGC	2 cut(s)	216, 671
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	2 cut(s)	387, 468
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	666, 675
BstNI	CCWGG	2 cut(s)	474, 727
BstSCI	CCNGG	2 cut(s)	472, 725
BstUI	CGCG	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	305
Cac8I	GCNNGC	2 cut(s)	137, 156
CciI	TCATGA	1 cut(s)	717
CfoI	GCGC	2 cut(s)	216, 671
Csp6I	GTAC	2 cut(s)	202, 730
CviAII	CATG	2 cut(s)	702, 718
CviJI	RGCY	6 cut(s)	135, 305, 549, 578, 660, 678
CviKI_1	RGCY	6 cut(s)	135, 305, 549, 578, 660, 678
CviQI	GTAC	2 cut(s)	202, 730
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
Eam1104I	CTCTTC	1 cut(s)	521
EarI	CTCTTC	1 cut(s)	521
Eco147I	AGGCCT	1 cut(s)	305
Eco31I	GGTCTC	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	472, 725
EcoT22I	ATGCAT	1 cut(s)	707
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	2 cut(s)	705, 721
FaiI	YATR	9 cut(s)	20, 92, 163, 198, 287, 341, 703, 707, 719
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	701, 717
FauI	CCCGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	269
GlaI	GCGC	2 cut(s)	215, 670
GsaI	CCCAGC	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	672
HaeIII	GGCC	1 cut(s)	305
HhaI	GCGC	2 cut(s)	216, 671
Hin1II	CATG	2 cut(s)	705, 721
Hin6I	GCGC	2 cut(s)	214, 669
HinP1I	GCGC	2 cut(s)	214, 669
HinfI	GANTC	2 cut(s)	13, 409
HphI	GGTGA	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	687
Hpy188III	TCNNGA	4 cut(s)	335, 368, 655, 718
Hpy8I	GTNNAC	1 cut(s)	687
HpyAV	CCTTC	3 cut(s)	119, 387, 610
HpyCH4III	ACNGT	2 cut(s)	484, 512
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	3 cut(s)	76, 452, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	666, 675
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	705, 721
HspAI	GCGC	2 cut(s)	214, 669
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	1 cut(s)	582
LpnPI	CCDG	8 cut(s)	117, 121, 426, 459, 486, 564, 712, 739
LweI	GCATC	3 cut(s)	63, 141, 493
MaeI	CTAG	1 cut(s)	269
MaeII	ACGT	1 cut(s)	36
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	4 cut(s)	22, 538, 601, 616
MhlI	GDGCHC	1 cut(s)	587
MluCI	AATT	7 cut(s)	64, 127, 188, 310, 447, 467, 750
MnlI	CCTC	9 cut(s)	139, 286, 295, 342, 364, 399, 533, 589, 633
Mph1103I	ATGCAT	1 cut(s)	707
MseI	TTAA	2 cut(s)	167, 399
MslI	CAYNNNNRTG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	474, 727
MvaI	CCWGG	2 cut(s)	474, 727
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	666, 675
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	2 cut(s)	705, 721
NlaIV	GGNNCC	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	707
PagI	TCATGA	1 cut(s)	717
PceI	AGGCCT	1 cut(s)	305
PfeI	GAWTC	2 cut(s)	13, 409
Psp6I	CCWGG	2 cut(s)	472, 725
PspFI	CCCAGC	1 cut(s)	578
PspGI	CCWGG	2 cut(s)	472, 725
PspN4I	GGNNCC	1 cut(s)	375
RsaI	GTAC	2 cut(s)	203, 731
RsaNI	GTAC	2 cut(s)	202, 730
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	167, 399
Sau3AI	GATC	1 cut(s)	392
ScrFI	CCNGG	2 cut(s)	474, 727
SduI	GDGCHC	1 cut(s)	587
SetI	ASST	8 cut(s)	39, 124, 375, 544, 551, 571, 580, 731
SfaNI	GCATC	3 cut(s)	63, 141, 493
SmiMI	CAYNNNNRTG	1 cut(s)	344
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
Sse9I	AATT	7 cut(s)	64, 127, 188, 310, 447, 467, 750
SseBI	AGGCCT	1 cut(s)	305
SsiI	CCGC	2 cut(s)	236, 352
SspMI	CTAG	1 cut(s)	269
StuI	AGGCCT	1 cut(s)	305
StyD4I	CCNGG	2 cut(s)	472, 725
TaaI	ACNGT	2 cut(s)	484, 512
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	2 cut(s)	391, 501
TasI	AATT	7 cut(s)	64, 127, 188, 310, 447, 467, 750
TfiI	GAWTC	2 cut(s)	13, 409
Tru1I	TTAA	2 cut(s)	167, 399
Tru9I	TTAA	2 cut(s)	167, 399
TspDTI	ATGAA	5 cut(s)	17, 35, 172, 270, 734
XapI	RAATTY	2 cut(s)	188, 310
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.