Rmu_sc0009858.1_g000011

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009858.1
OG0000153
Physical Location & Seq
Reverse (-)
41495 .. 42472
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009858.1_g000011.1.cds

Sequence Viewer

Length: 897 bp
atgtttacaatattatgcgaatccctatcgttggatggtaatcccttcaagatagagctaaataaagcgcagaagaagaagctgcagattctaaaaaggggtgcttatgattctaaagaagtgttctgtttctgttactgggtgagacacttttggggctcgatggacggaggcaagtttaagcatggtgcaggtttcgaatctggctgccgggtggaagccatgtttgcttactggttgagcaggttcattttcacagattttccctatgagaacatgcagccgaaacttgatcagatttcaaaggatgataaagaaggtgcggggcagtatggcattgactctctagtatctagttttttccttcaagtatttgtatgggagagattcgaaggtttggctgtggaacccgtaactcctgagtcccttcaccaccttgagggaggtaaaagggacttcaatctagtaggattcccattgtgttgtagatggttcagaaggaaggccaagaagggtgcatttaggcctgttgttttggacgacatcgggaagttcaatttcagaccatatttcactgctcatggcttccagacatttcctttcttttatccagagggtaactcatcacctttcctagagccggttgagctgcttctaaccactagtgcgcagtccataatagcatgtggtgatttctttgaccccgtgatggagaagtattctcctcatagagttaagaggcaatttggcatcgaccaggatgtgccatcgcatctatcttacggtggacatgttggggattgcatcatgggtttcactcggacatatggtatttcctgcaggggtatgctctccgatagtctcgggaagaaaggctgtgttggctcccttctttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

298

Amino Acids

33.93

Weight (kDa)

8.26

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 669
Acc36I ACCTGC 2 cut(s) 182, 234
AciI CCGC 1 cut(s) 323
AfiI CCNNNNNNNGG 4 cut(s) 31, 439, 640, 709
AflIII ACRYGT 1 cut(s) 790
AgsI TTSAA 5 cut(s) 49, 303, 368, 460, 556
AhlI ACTAGT 1 cut(s) 662
AjnI CCWGG 1 cut(s) 756
AluBI AGCT 3 cut(s) 58, 82, 649
AluI AGCT 3 cut(s) 58, 82, 649
Alw26I GTCTC 2 cut(s) 139, 866
Ama87I CYCGRG 1 cut(s) 863
AoxI GGCC 2 cut(s) 504, 524
ApeKI GCWGC 4 cut(s) 82, 207, 280, 649
AspLEI GCGC 2 cut(s) 70, 670
AsuC2I CCSGG 1 cut(s) 212
AsuHPI GGTGA 4 cut(s) 154, 422, 618, 701
AsuII TTCGAA 2 cut(s) 198, 390
AvaI CYCGRG 1 cut(s) 863
BanII GRGCYC 1 cut(s) 161
BbvI GCAGC 4 cut(s) 69, 194, 292, 636
BccI CCATC 5 cut(s) 29, 157, 483, 703, 775
BciT130I CCWGG 1 cut(s) 758
BclI TGATCA 1 cut(s) 292
BcnI CCSGG 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 139, 866
BcuI ACTAGT 1 cut(s) 662
BfaI CTAG 5 cut(s) 347, 354, 464, 635, 663
BfmI CTRYAG 2 cut(s) 83, 838
BfuAI ACCTGC 2 cut(s) 182, 234
BisI GCNGC 4 cut(s) 83, 208, 281, 650
BlsI GCNGC 4 cut(s) 84, 209, 282, 651
Bme1390I CCNGG 2 cut(s) 212, 758
BmeT110I CYCGRG 1 cut(s) 863
BmiI GGNNCC 2 cut(s) 408, 886
BmrFI CCNGG 2 cut(s) 212, 758
BmrI ACTGGG 1 cut(s) 148
BmsI GCATC 3 cut(s) 759, 781, 813
BmuI ACTGGG 1 cut(s) 148
BplI GAGNNNNNCTC 2 cut(s) 605, 637
Bpu14I TTCGAA 2 cut(s) 198, 390
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 39
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 439, 640, 709
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 2 cut(s) 143, 239
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 758
BseGI GGATG 3 cut(s) 40, 313, 766
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 4 cut(s) 31, 439, 640, 709
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 143, 239
BseRI GAGGAG 1 cut(s) 714
BseXI GCAGC 4 cut(s) 69, 194, 292, 636
BsgI GTGCAG 1 cut(s) 210
BshFI GGCC 2 cut(s) 506, 526
BsiHKCI CYCGRG 1 cut(s) 863
BsiSI CCGG 2 cut(s) 211, 641
BslFI GGGAC 2 cut(s) 409, 467
BslI CCNNNNNNNGG 4 cut(s) 31, 439, 640, 709
BsmAI GTCTC 2 cut(s) 139, 866
BsmFI GGGAC 2 cut(s) 409, 467
BsnI GGCC 2 cut(s) 506, 526
BsoBI CYCGRG 1 cut(s) 863
Bsp119I TTCGAA 2 cut(s) 198, 390
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 292
BspACI CCGC 1 cut(s) 323
BspANI GGCC 2 cut(s) 506, 526
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 408, 886
BspMAI CTGCAG 2 cut(s) 87, 842
BspMI ACCTGC 2 cut(s) 182, 234
BspT104I TTCGAA 2 cut(s) 198, 390
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 2 cut(s) 143, 239
BssAI RCCGGY 1 cut(s) 640
BssMI GATC 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 1 cut(s) 785
BstBI TTCGAA 2 cut(s) 198, 390
BstDEI CTNAG 1 cut(s) 420
BstF5I GGATG 3 cut(s) 40, 313, 766
BstHHI GCGC 2 cut(s) 70, 670
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 2 cut(s) 139, 866
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 3 cut(s) 227, 646, 882
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 3 cut(s) 280, 687, 794
BstSCI CCNGG 2 cut(s) 210, 756
BstSFI CTRYAG 2 cut(s) 83, 838
BstV1I GCAGC 4 cut(s) 69, 194, 292, 636
BsuRI GGCC 2 cut(s) 506, 526
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 3 cut(s) 40, 313, 766
BtsI GCAGTG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 573
BveI ACCTGC 2 cut(s) 182, 234
CfoI GCGC 2 cut(s) 70, 670
Cfr10I RCCGGY 1 cut(s) 640
CviAII CATG 7 cut(s) 185, 223, 277, 581, 684, 791, 808
DdeI CTNAG 1 cut(s) 420
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco147I AGGCCT 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 161
Eco88I CYCGRG 1 cut(s) 863
EcoRII CCWGG 1 cut(s) 756
EcoT38I GRGCYC 1 cut(s) 161
FaeI CATG 7 cut(s) 188, 226, 280, 584, 687, 794, 811
FalI AAGNNNNNCTT 2 cut(s) 88, 120
FaqI GGGAC 2 cut(s) 409, 467
FatI CATG 7 cut(s) 184, 222, 276, 580, 683, 790, 807
FauI CCCGC 1 cut(s) 316
FauNDI CATATG 1 cut(s) 826
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 4 cut(s) 83, 208, 281, 650
FokI GGATG 3 cut(s) 47, 320, 773
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 4 cut(s) 83, 208, 281, 650
FspBI CTAG 5 cut(s) 347, 354, 464, 635, 663
FspI TGCGCA 1 cut(s) 669
GlaI GCGC 2 cut(s) 69, 669
GluI GCNGC 4 cut(s) 83, 208, 281, 650
HaeIII GGCC 2 cut(s) 506, 526
HapII CCGG 2 cut(s) 211, 641
HhaI GCGC 2 cut(s) 70, 670
Hin1II CATG 7 cut(s) 188, 226, 280, 584, 687, 794, 811
Hin6I GCGC 2 cut(s) 68, 668
HinP1I GCGC 2 cut(s) 68, 668
HinfI GANTC 8 cut(s) 20, 88, 110, 200, 341, 387, 422, 471
HpaII CCGG 2 cut(s) 211, 641
HphI GGTGA 4 cut(s) 154, 422, 618, 701
Hpy166II GTNNAC 2 cut(s) 6, 788
Hpy188I TCNGA 5 cut(s) 297, 497, 563, 822, 856
Hpy188III TCNNGA 6 cut(s) 49, 419, 547, 589, 611, 865
Hpy8I GTNNAC 2 cut(s) 6, 788
HpyAV CCTTC 8 cut(s) 55, 311, 374, 386, 437, 492, 496, 505
HpyCH4III ACNGT 1 cut(s) 785
HpyCH4V TGCA 6 cut(s) 85, 191, 280, 518, 804, 840
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 646, 882
HpyF3I CTNAG 1 cut(s) 420
Hsp92II CATG 7 cut(s) 188, 226, 280, 584, 687, 794, 811
HspAI GCGC 2 cut(s) 68, 668
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 890
Lsp1109I GCAGC 4 cut(s) 69, 194, 292, 636
LweI GCATC 3 cut(s) 759, 781, 813
MaeI CTAG 5 cut(s) 347, 354, 464, 635, 663
MaeIII GTNAC 3 cut(s) 134, 412, 617
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 3 cut(s) 85, 88, 880
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 556, 743
MlyI GAGTC 2 cut(s) 335, 431
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 6 cut(s) 164, 433, 437, 607, 732, 735
MseI TTAA 2 cut(s) 180, 735
MspI CCGG 2 cut(s) 211, 641
MspR9I CCNGG 2 cut(s) 212, 758
MvaI CCWGG 1 cut(s) 758
MwoI GCNNNNNNNGC 3 cut(s) 227, 646, 882
NciI CCSGG 1 cut(s) 212
NdeI CATATG 1 cut(s) 826
NdeII GATC 1 cut(s) 292
NlaIII CATG 7 cut(s) 188, 226, 280, 584, 687, 794, 811
NlaIV GGNNCC 2 cut(s) 408, 886
NsbI TGCGCA 1 cut(s) 669
NspI RCATGY 3 cut(s) 280, 687, 794
NspV TTCGAA 2 cut(s) 198, 390
PceI AGGCCT 1 cut(s) 526
PciI ACATGT 1 cut(s) 790
PfeI GAWTC 6 cut(s) 20, 88, 110, 200, 387, 471
PkrI GCNGC 4 cut(s) 84, 209, 282, 651
PleI GAGTC 2 cut(s) 335, 430
PpsI GAGTC 2 cut(s) 335, 430
PscI ACATGT 1 cut(s) 790
Psp6I CCWGG 1 cut(s) 756
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 2 cut(s) 408, 886
PstI CTGCAG 2 cut(s) 87, 842
SaqAI TTAA 2 cut(s) 180, 735
SatI GCNGC 4 cut(s) 83, 208, 281, 650
Sau3AI GATC 1 cut(s) 292
SbfI CCTGCAGG 1 cut(s) 842
SchI GAGTC 2 cut(s) 335, 431
ScrFI CCNGG 2 cut(s) 212, 758
SdaI CCTGCAGG 1 cut(s) 842
SduI GDGCHC 1 cut(s) 161
SfaNI GCATC 3 cut(s) 759, 781, 813
SfcI CTRYAG 2 cut(s) 83, 838
SfuI TTCGAA 2 cut(s) 198, 390
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
SpeI ACTAGT 1 cut(s) 662
Sse8387I CCTGCAGG 1 cut(s) 842
Sse9I AATT 2 cut(s) 556, 743
SseBI AGGCCT 1 cut(s) 526
SsiI CCGC 1 cut(s) 323
SspI AATATT 1 cut(s) 12
SspMI CTAG 5 cut(s) 347, 354, 464, 635, 663
StuI AGGCCT 1 cut(s) 526
StyD4I CCNGG 2 cut(s) 210, 756
TaaI ACNGT 1 cut(s) 785
TaqI TCGA 4 cut(s) 161, 198, 390, 753
TasI AATT 2 cut(s) 556, 743
TfiI GAWTC 6 cut(s) 20, 88, 110, 200, 387, 471
Tru1I TTAA 2 cut(s) 180, 735
Tru9I TTAA 2 cut(s) 180, 735
TscAI CASTG 1 cut(s) 580
TseI GCWGC 4 cut(s) 82, 207, 280, 649
TspDTI ATGAA 1 cut(s) 238
TspGWI ACGGA 1 cut(s) 183
TspRI CASTG 1 cut(s) 580
XceI RCATGY 3 cut(s) 280, 687, 794
XspI CTAG 5 cut(s) 347, 354, 464, 635, 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.