Rmu_sc0000830.1_g000059

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000830.1
OG0000153
Physical Location & Seq
Reverse (-)
246200 .. 247239
1040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000830.1_g000059.1.cds

Sequence Viewer

Length: 801 bp
atgggccggcacgagcccgacacgataataaatgggccggcccaagcactgcacgaagcacgactaggcctgcttaaaatgagttgggccgggccggcccgtttgccacatctaccagccgccataaagcagaatcatccttcggatgtcgatgagagtaatgacggggttggtcatgacacattgatacgtgctttattagttaagtctgataagcatgctccagaggttgataagatgactatcattgagactcaaggccttgacccaagcttgcctgctaaaggattaactagtgagtgggcgacccatatgaacaacttcatggttcgatttgcttctaaagaggagtccgctataagcatggctgacattgcaccagcattgaacggagacactgctgattttgcaggcctgaaaattccttcagagttagcgggtcatttggctagatttgctgagagatatagtgggggagatatctttaacttaattgatcgagactatacttcaagaaagaagtgcgagttgattaaggaacttggcatgatgttgtacaacatggaagtttgtcagataaaagatggaaaaatgttccttatttggagagatgcttgccgtgatttcatgggggagatggttttacaaaccaagaaggagcttgcacatcttgagggagaattgcgcaaggctcaggatgatttgaattctagtttgcgcgatgttcctattcctgctatgaagtgcgtactagagtcttcttggaaggatgacggttgcttctttcattatttgtactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

266

Amino Acids

29.73

Weight (kDa)

5.58

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 686
AccII CGCG 1 cut(s) 720
AciI CCGC 3 cut(s) 120, 354, 437
AcsI RAATTY 2 cut(s) 420, 706
AcuI CTGAAG 1 cut(s) 411
AfaI GTAC 3 cut(s) 557, 750, 797
AfiI CCNNNNNNNGG 1 cut(s) 284
AgsI TTSAA 3 cut(s) 388, 513, 706
AhlI ACTAGT 1 cut(s) 293
AluBI AGCT 2 cut(s) 273, 661
AluI AGCT 2 cut(s) 273, 661
Alw26I GTCTC 3 cut(s) 245, 387, 495
AoxI GGCC 9 cut(s) 4, 35, 39, 67, 87, 92, 96, 259, 412
ApoI RAATTY 2 cut(s) 420, 706
Asp700I GAANNNNTTC 1 cut(s) 320
AspLEI GCGC 2 cut(s) 687, 720
AspS9I GGNCC 6 cut(s) 4, 35, 40, 87, 92, 97
AsuC2I CCSGG 1 cut(s) 91
BanII GRGCYC 1 cut(s) 18
BauI CACGAG 1 cut(s) 11
BbsI GAAGAC 1 cut(s) 750
BccI CCATC 2 cut(s) 578, 631
BceAI ACGGC 1 cut(s) 603
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 3 cut(s) 245, 387, 495
BcuI ACTAGT 1 cut(s) 293
BfaI CTAG 6 cut(s) 65, 294, 450, 711, 752, 799
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 6 cut(s) 4, 35, 40, 87, 92, 97
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 601
BpiI GAAGAC 1 cut(s) 750
BpmI CTGGAG 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 693
BpuEI CTTGAG 2 cut(s) 240, 692
BpuMI CCSGG 1 cut(s) 91
BsaAI YACGTR 1 cut(s) 191
BsaBI GATNNNNATC 1 cut(s) 242
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse118I RCCGGY 3 cut(s) 6, 37, 94
Bse3DI GCAATG 1 cut(s) 372
Bse8I GATNNNNATC 1 cut(s) 242
BseGI GGATG 4 cut(s) 136, 151, 703, 775
BseJI GATNNNNATC 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 2 cut(s) 450, 707
BseRI GAGGAG 1 cut(s) 362
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 720
BshFI GGCC 9 cut(s) 6, 37, 41, 69, 89, 94, 98, 261, 414
BsiSI CCGG 4 cut(s) 7, 38, 90, 95
BslI CCNNNNNNNGG 1 cut(s) 284
BsmAI GTCTC 3 cut(s) 245, 387, 495
BsnI GGCC 9 cut(s) 6, 37, 41, 69, 89, 94, 98, 261, 414
Bsp1286I GDGCHC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 555
Bsp143I GATC 1 cut(s) 496
BspACI CCGC 3 cut(s) 120, 354, 437
BspANI GGCC 9 cut(s) 6, 37, 41, 69, 89, 94, 98, 261, 414
BspCNI CTCAG 2 cut(s) 451, 706
BspFNI CGCG 1 cut(s) 720
BspHI TCATGA 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 372
BsrFI RCCGGY 3 cut(s) 6, 37, 94
BsrGI TGTACA 1 cut(s) 555
BssAI RCCGGY 3 cut(s) 6, 37, 94
BssMI GATC 1 cut(s) 496
BssSI CACGAG 1 cut(s) 11
Bst2BI CACGAG 1 cut(s) 11
Bst4CI ACNGT 1 cut(s) 776
BstAUI TGTACA 1 cut(s) 555
BstBAI YACGTR 1 cut(s) 191
BstDEI CTNAG 2 cut(s) 459, 693
BstENI CCTNNNNNAGG 1 cut(s) 282
BstF5I GGATG 4 cut(s) 136, 151, 703, 775
BstFNI CGCG 1 cut(s) 720
BstHHI GCGC 2 cut(s) 687, 720
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 3 cut(s) 245, 387, 495
BstMBI GATC 1 cut(s) 496
BstMWI GCNNNNNNNGC 4 cut(s) 95, 374, 407, 455
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 1 cut(s) 720
BstV2I GAAGAC 1 cut(s) 750
BsuRI GGCC 9 cut(s) 6, 37, 41, 69, 89, 94, 98, 261, 414
BtgZI GCGATG 1 cut(s) 735
BtsCI GGATG 4 cut(s) 136, 151, 703, 775
BtsI GCAGTG 2 cut(s) 47, 396
BtsIMutI CAGTG 2 cut(s) 47, 396
CciI TCATGA 1 cut(s) 175
CfoI GCGC 2 cut(s) 687, 720
Cfr10I RCCGGY 3 cut(s) 6, 37, 94
Cfr13I GGNCC 6 cut(s) 4, 35, 40, 87, 92, 97
Csp6I GTAC 3 cut(s) 556, 749, 796
CviAII CATG 7 cut(s) 176, 218, 325, 364, 547, 562, 628
CviQI GTAC 3 cut(s) 556, 749, 796
DdeI CTNAG 2 cut(s) 459, 693
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
Eco147I AGGCCT 3 cut(s) 69, 261, 414
Eco24I GRGCYC 1 cut(s) 18
Eco32I GATATC 1 cut(s) 481
Eco57I CTGAAG 1 cut(s) 411
EcoNI CCTNNNNNAGG 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 706
EcoRV GATATC 1 cut(s) 481
EcoT38I GRGCYC 1 cut(s) 18
FaeI CATG 7 cut(s) 179, 221, 328, 367, 550, 565, 631
FatI CATG 7 cut(s) 175, 217, 324, 363, 546, 561, 627
FauI CCCGC 1 cut(s) 430
FauNDI CATATG 1 cut(s) 312
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 4 cut(s) 123, 158, 710, 782
FriOI GRGCYC 1 cut(s) 18
FseI GGCCGGCC 2 cut(s) 41, 98
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 6 cut(s) 65, 294, 450, 711, 752, 799
FspI TGCGCA 1 cut(s) 686
GlaI GCGC 2 cut(s) 686, 719
GluI GCNGC 1 cut(s) 120
GsuI CTGGAG 1 cut(s) 207
HaeIII GGCC 9 cut(s) 6, 37, 41, 69, 89, 94, 98, 261, 414
HapII CCGG 4 cut(s) 7, 38, 90, 95
HhaI GCGC 2 cut(s) 687, 720
Hin1II CATG 7 cut(s) 179, 221, 328, 367, 550, 565, 631
Hin6I GCGC 2 cut(s) 685, 718
HinP1I GCGC 2 cut(s) 685, 718
HindIII AAGCTT 1 cut(s) 271
HinfI GANTC 4 cut(s) 133, 253, 350, 755
HpaII CCGG 4 cut(s) 7, 38, 90, 95
Hpy188I TCNGA 4 cut(s) 145, 211, 430, 576
Hpy188III TCNNGA 6 cut(s) 176, 224, 500, 513, 671, 695
HpyAV CCTTC 4 cut(s) 150, 435, 649, 760
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4IV ACGT 1 cut(s) 190
HpyCH4V TGCA 4 cut(s) 52, 377, 410, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 374, 407, 455
HpyF3I CTNAG 2 cut(s) 459, 693
HpySE526I ACGT 1 cut(s) 190
Hsp92II CATG 7 cut(s) 179, 221, 328, 367, 550, 565, 631
HspAI GCGC 2 cut(s) 685, 718
KroI GCCGGC 3 cut(s) 6, 37, 94
KroNI GCCGGC 3 cut(s) 8, 39, 96
Kzo9I GATC 1 cut(s) 496
LmnI GCTCC 2 cut(s) 226, 658
LweI GCATC 1 cut(s) 601
MaeI CTAG 6 cut(s) 65, 294, 450, 711, 752, 799
MaeII ACGT 1 cut(s) 190
MalI GATC 1 cut(s) 498
MboI GATC 1 cut(s) 496
MboII GAAGA 1 cut(s) 750
MhlI GDGCHC 1 cut(s) 18
MluCI AATT 4 cut(s) 420, 492, 680, 706
MlyI GAGTC 3 cut(s) 247, 359, 764
MnlI CCTC 3 cut(s) 220, 340, 667
MroNI GCCGGC 3 cut(s) 6, 37, 94
MroXI GAANNNNTTC 1 cut(s) 320
MseI TTAA 6 cut(s) 75, 204, 290, 486, 491, 534
MspI CCGG 4 cut(s) 7, 38, 90, 95
MspR9I CCNGG 1 cut(s) 91
MvnI CGCG 1 cut(s) 720
MwoI GCNNNNNNNGC 4 cut(s) 95, 374, 407, 455
NaeI GCCGGC 3 cut(s) 8, 39, 96
NciI CCSGG 1 cut(s) 91
NdeI CATATG 1 cut(s) 312
NdeII GATC 1 cut(s) 496
NgoMIV GCCGGC 3 cut(s) 6, 37, 94
NlaIII CATG 7 cut(s) 179, 221, 328, 367, 550, 565, 631
NsbI TGCGCA 1 cut(s) 686
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PagI TCATGA 1 cut(s) 175
PceI AGGCCT 3 cut(s) 69, 261, 414
PdiI GCCGGC 3 cut(s) 8, 39, 96
PdmI GAANNNNTTC 1 cut(s) 320
PfeI GAWTC 1 cut(s) 133
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 3 cut(s) 247, 358, 763
PpsI GAGTC 3 cut(s) 247, 358, 763
Ppu21I YACGTR 1 cut(s) 191
PspPI GGNCC 6 cut(s) 4, 35, 40, 87, 92, 97
RigI GGCCGGCC 2 cut(s) 41, 98
RsaI GTAC 3 cut(s) 557, 750, 797
RsaNI GTAC 3 cut(s) 556, 749, 796
SaqAI TTAA 6 cut(s) 75, 204, 290, 486, 491, 534
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 6 cut(s) 4, 35, 40, 87, 92, 97
SchI GAGTC 3 cut(s) 247, 359, 764
ScrFI CCNGG 1 cut(s) 91
SduI GDGCHC 1 cut(s) 18
SetI ASST 4 cut(s) 193, 231, 275, 663
SfaNI GCATC 1 cut(s) 601
SfiI GGCCNNNNNGGCC 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 255, 671
SmoI CTYRAG 2 cut(s) 255, 671
SpeI ACTAGT 1 cut(s) 293
SphI GCATGC 1 cut(s) 221
Sse9I AATT 4 cut(s) 420, 492, 680, 706
SseBI AGGCCT 3 cut(s) 69, 261, 414
SsiI CCGC 3 cut(s) 120, 354, 437
SspMI CTAG 6 cut(s) 65, 294, 450, 711, 752, 799
StuI AGGCCT 3 cut(s) 69, 261, 414
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 776
TaiI ACGT 1 cut(s) 193
TaqI TCGA 3 cut(s) 150, 331, 499
TasI AATT 4 cut(s) 420, 492, 680, 706
TatI WGTACW 2 cut(s) 555, 795
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 133
Tru1I TTAA 6 cut(s) 75, 204, 290, 486, 491, 534
Tru9I TTAA 6 cut(s) 75, 204, 290, 486, 491, 534
TscAI CASTG 2 cut(s) 54, 403
TspDTI ATGAA 5 cut(s) 313, 329, 616, 755, 776
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 2 cut(s) 54, 403
XagI CCTNNNNNAGG 1 cut(s) 282
XapI RAATTY 2 cut(s) 420, 706
XceI RCATGY 1 cut(s) 221
XmnI GAANNNNTTC 1 cut(s) 320
XspI CTAG 6 cut(s) 65, 294, 450, 711, 752, 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.