Rroxscaffold_3G00226460

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000153
Physical Location & Seq
Forward (+)
9962012 .. 9967940
5929 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226460.1

Sequence Viewer

Length: 543 bp
ATGTTTCTTGGTCACGTCTATCGTACGCTTGACTACATCGTTGGTGACGAGTTGGAGAGCATTGGTCGGTGTGGAGTTACTACATTGGTTTCTACCACTTTTCTGCAAGTATTTATGCGGGAGCGGTTCAAAGGACTAAAGGTGGAGCCCACGACCATGAGTCTCTCTTTGGAATTGTACAACAACGACAAAGGAAGGCGACACAGCAAGCACGGATCGAATATTTGCCGCCGGTACTTCCTCTGCTGTGTCGTTGGTTTAAAAAGGAGAGAAGATAAGGCTGTGTTTGCCCCGAGCATGTTAGATGATGTAAATAATTTCATCCGGCAGCCCTATCTCCGACCTTCGAGTTTGAGACCTTTTCATTTTACGGTAGAGAAGAGCGCGGTGCTACGGCTCTTGCCATTGAAAACGGCGGGTGTGAGCAATGACAATCGAGAGAAGGATCATCCTTCGGATGTTGGTAAGAGTGATGACGGGGTTAGTCATGACACGGCGGTACATGCCTTAGTTGAGTCCGATAAGCATGCTCCGAGGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

180

Amino Acids

20.44

Weight (kDa)

8.91

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000153)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25700 FvH4_2g11190 FvH4_2g11201 FvH4_2g16130 FvH4_3g40630 FvH4_4g02210 FvH4_4g14564 FvH4_6g24041 FvH4_6g24050 FvH4_6g24050
rosa_chinensis RchiOBHm_Chr1g0348241 RchiOBHm_Chr2g0109211 RchiOBHm_Chr2g0144471 RchiOBHm_Chr2g0174771 RchiOBHm_Chr3g0495101 RchiOBHm_Chr5g0047301 RchiOBHm_Chr5g0062201
rosa_laevigata RLG00000000570 RLG00000000571 RLG00000008718 RLG00000008719 RLG00000008835 RLG00000019314 RLG00000019316 RLG00000020979
rosa_multiflora Rmu_co8024416.1_g000001 Rmu_co8152282.1_g000001 Rmu_sc0000103.1_g000058 Rmu_sc0000161.1_g000022 Rmu_sc0000517.1_g000009 Rmu_sc0000517.1_g000010 Rmu_sc0000571.1_g000024 Rmu_sc0000580.1_g000130 Rmu_sc0000744.1_g000130 Rmu_sc0000796.1_g000017 Rmu_sc0000800.1_g000021 Rmu_sc0000830.1_g000037 Rmu_sc0000830.1_g000038 Rmu_sc0000830.1_g000059 Rmu_sc0000958.1_g000012 Rmu_sc0001094.1_g000018 Rmu_sc0001163.1_g000004 Rmu_sc0001200.1_g000052 Rmu_sc0001339.1_g000005 Rmu_sc0001397.1_g000009 Rmu_sc0001563.1_g000043 Rmu_sc0001563.1_g000044 Rmu_sc0001570.1_g000001 Rmu_sc0001629.1_g000016 Rmu_sc0001763.1_g000006 Rmu_sc0002011.1_g000013 Rmu_sc0002012.1_g000012 Rmu_sc0002268.1_g000026 Rmu_sc0002268.1_g000027 Rmu_sc0002321.1_g000021 Rmu_sc0002722.1_g000002 Rmu_sc0003032.1_g000006 Rmu_sc0003185.1_g000008 Rmu_sc0003238.1_g000006 Rmu_sc0003275.1_g000037 Rmu_sc0003275.1_g000038 Rmu_sc0003441.1_g000042 Rmu_sc0003748.1_g000027 Rmu_sc0004229.1_g000011 Rmu_sc0004283.1_g000041 Rmu_sc0004283.1_g000042 Rmu_sc0004283.1_g000043 Rmu_sc0004841.1_g000026 Rmu_sc0004841.1_g000031 Rmu_sc0004877.1_g000001 Rmu_sc0005039.1_g000012 Rmu_sc0005584.1_g000019 Rmu_sc0005584.1_g000020 Rmu_sc0005584.1_g000021 Rmu_sc0005600.1_g000021 Rmu_sc0005914.1_g000004 Rmu_sc0006139.1_g000006 Rmu_sc0006638.1_g000001 Rmu_sc0007228.1_g000001 Rmu_sc0007300.1_g000008 Rmu_sc0007486.1_g000002 Rmu_sc0007737.1_g000007 Rmu_sc0008328.1_g000015 Rmu_sc0009064.1_g000002 Rmu_sc0009315.1_g000006 Rmu_sc0009472.1_g000009 Rmu_sc0009774.1_g000016 Rmu_sc0009858.1_g000010 Rmu_sc0009858.1_g000011 Rmu_sc0010489.1_g000001 Rmu_sc0010579.1_g000002 Rmu_sc0011511.1_g000002 Rmu_sc0013359.1_g000001 Rmu_sc0014367.1_g000005 Rmu_sc0015624.1_g000003 Rmu_sc0016756.1_g000001 Rmu_sc0021286.1_g000001 Rmu_sc0021693.1_g000001 Rmu_sc0022538.1_g000001 Rmu_sc0030983.1_g000001 Rmu_sc0037682.1_g000001 Rmu_sc0041059.1_g000001 Rmu_ssc0000003.1_g000013 Rmu_ssc0000003.1_g000015 Rmu_ssc0000388.1_g000018 Rmu_ssc0000409.1_g000013 Rmu_ssc0000409.1_g000015 Rmu_ssc0000476.1_g000003
rosa_roxburghii Rroxscaffold_1G00017510 Rroxscaffold_1G00017520 Rroxscaffold_1G00017530 Rroxscaffold_1G00017990 Rroxscaffold_1G00031430 Rroxscaffold_1G00045790 Rroxscaffold_2G00108360 Rroxscaffold_2G00127910 Rroxscaffold_3G00218970 Rroxscaffold_3G00218980 Rroxscaffold_3G00218990 Rroxscaffold_3G00226450 Rroxscaffold_3G00226460 Rroxscaffold_3G00230570 Rroxscaffold_3G00230920 Rroxscaffold_4G00284360 Rroxscaffold_4G00292370 Rroxscaffold_4G00307090 Rroxscaffold_4G00319260 Rroxscaffold_4G00332580 Rroxscaffold_5G00341080 Rroxscaffold_5G00344620 Rroxscaffold_5G00358950 Rroxscaffold_5G00368600 Rroxscaffold_5G00368610 Rroxscaffold_5G00378350 Rroxscaffold_6G00388550 Rroxscaffold_6G00398560 Rroxscaffold_6G00398570 Rroxscaffold_7G00194900 Rroxscaffold_7G00194910 Rroxscaffold_7G00194920
rosa_rugosa Rorug05G0347200 Rorug06G0064400 Rorug06G0064500 Rorug07G0190700 Rorug07G0190800 Rorug07G0276200 Rorug07G0344800 Rorug07G0344900
rosa_samantha Rh1AG138000 Rh1AG138100 Rh1DG079100 Rh1DG264500 Rh1DG264600 Rh1DG275600 Rh1DG275700 Rh2AG474800 Rh2AG474900 Rh2AG557100 Rh2AG557200 Rh2AG567400 Rh2AG568000 Rh2AG568100 Rh3CG345000 Rh3CG351000 Rh3CG364300 Rh4AG186000 Rh5AG278000 Rh5DG280000 Rh5DG281700 Rh5DG447800 Rh7AG499400 Rh7BG470300 Rh7BG470400 Rh7DG197800 Rh7DG197900 Rh7DG198000 Rh7DG284800 Rh7DG311600 Rh7DG311700 Rh7DG329300 Rh7DG393300 Rh7DG393500 Rh7DG483800 Rh7DG483900
rosa_wichuraiana Rw0G003510 Rw1G021670 Rw2G016920 Rw3G020700 Rw7G028090 Rw7G031160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 124
AccII CGCG 1 cut(s) 386
AciI CCGC 6 cut(s) 118, 124, 229, 386, 416, 497
AclWI GGATC 2 cut(s) 223, 453
AfaI GTAC 4 cut(s) 25, 179, 236, 501
AgsI TTSAA 2 cut(s) 130, 409
AhdI GACNNNNNGTC 1 cut(s) 159
AjiI CACGTC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 167, 349
AlwI GGATC 2 cut(s) 223, 453
Ama87I CYCGRG 1 cut(s) 292
ApeKI GCWGC 1 cut(s) 328
AspLEI GCGC 1 cut(s) 386
AsuHPI GGTGA 1 cut(s) 56
AvaI CYCGRG 1 cut(s) 292
BanII GRGCYC 1 cut(s) 150
BbvI GCAGC 1 cut(s) 340
BceAI ACGGC 3 cut(s) 410, 429, 510
BcgI CGANNNNNNTGC 2 cut(s) 509, 543
BcoDI GTCTC 2 cut(s) 167, 349
BisI GCNGC 2 cut(s) 229, 329
BlsI GCNGC 2 cut(s) 230, 330
BmeRI GACNNNNNGTC 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 292
BmgBI CACGTC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 1 cut(s) 533
Bse118I RCCGGY 1 cut(s) 231
Bse3DI GCAATG 1 cut(s) 433
BseDI CCNNGG 1 cut(s) 533
BseGI GGATG 3 cut(s) 321, 448, 463
BseMI GCAATG 1 cut(s) 433
BseXI GCAGC 1 cut(s) 340
Bsh1236I CGCG 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 2 cut(s) 232, 325
BsiWI CGTACG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 167, 349
Bso31I GGTCTC 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 292
Bsp1286I GDGCHC 1 cut(s) 150
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 2 cut(s) 215, 445
BspACI CCGC 6 cut(s) 118, 124, 229, 386, 416, 497
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 1 cut(s) 487
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 2 cut(s) 223, 453
BspQI GCTCTTC 1 cut(s) 374
BspTNI GGTCTC 1 cut(s) 349
BsrBI CCGCTC 1 cut(s) 124
BsrDI GCAATG 1 cut(s) 433
BsrFI RCCGGY 1 cut(s) 231
BsrGI TGTACA 1 cut(s) 177
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 533
BssMI GATC 2 cut(s) 215, 445
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 2 cut(s) 209, 528
BstDEI CTNAG 1 cut(s) 508
BstF5I GGATG 3 cut(s) 321, 448, 463
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 2 cut(s) 218, 448
BstMAI GTCTC 2 cut(s) 167, 349
BstMBI GATC 2 cut(s) 215, 445
BstMWI GCNNNNNNNGC 2 cut(s) 287, 503
BstNSI RCATGY 3 cut(s) 301, 506, 530
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 340
BtrI CACGTC 1 cut(s) 16
BtsCI GGATG 3 cut(s) 321, 448, 463
Cac8I GCNNGC 2 cut(s) 209, 528
CciI TCATGA 1 cut(s) 487
CfoI GCGC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 231
Csp6I GTAC 4 cut(s) 24, 178, 235, 500
CviAII CATG 5 cut(s) 157, 298, 488, 503, 527
CviJI RGCY 4 cut(s) 148, 281, 331, 397
CviKI_1 RGCY 4 cut(s) 148, 281, 331, 397
CviQI GTAC 4 cut(s) 24, 178, 235, 500
DdeI CTNAG 1 cut(s) 508
DpnI GATC 2 cut(s) 217, 447
DpnII GATC 2 cut(s) 215, 445
DraI TTTAAA 1 cut(s) 261
DriI GACNNNNNGTC 1 cut(s) 159
Eam1104I CTCTTC 1 cut(s) 374
Eam1105I GACNNNNNGTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 374
Eco24I GRGCYC 1 cut(s) 150
Eco31I GGTCTC 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 150
FaeI CATG 5 cut(s) 160, 301, 491, 506, 530
FaiI YATR 6 cut(s) 116, 158, 299, 489, 504, 528
FatI CATG 5 cut(s) 156, 297, 487, 502, 526
FauI CCCGC 2 cut(s) 111, 409
Fnu4HI GCNGC 2 cut(s) 229, 329
FokI GGATG 3 cut(s) 308, 435, 470
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 229, 329
GlaI GCGC 1 cut(s) 385
GluI GCNGC 2 cut(s) 229, 329
HapII CCGG 2 cut(s) 232, 325
HhaI GCGC 1 cut(s) 386
Hin1II CATG 5 cut(s) 160, 301, 491, 506, 530
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 2 cut(s) 160, 515
HpaII CCGG 2 cut(s) 232, 325
HphI GGTGA 1 cut(s) 56
Hpy188I TCNGA 4 cut(s) 341, 457, 520, 534
Hpy188III TCNNGA 2 cut(s) 437, 488
HpyAV CCTTC 4 cut(s) 189, 354, 436, 462
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 106
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 503
HpyF3I CTNAG 1 cut(s) 508
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 5 cut(s) 160, 301, 491, 506, 530
HspAI GCGC 1 cut(s) 384
Kzo9I GATC 2 cut(s) 215, 445
LguI GCTCTTC 1 cut(s) 374
LmnI GCTCC 3 cut(s) 121, 145, 535
LpnPI CCDG 2 cut(s) 245, 338
Lsp1109I GCAGC 1 cut(s) 340
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 3 cut(s) 11, 44, 76
MalI GATC 2 cut(s) 217, 447
MbiI CCGCTC 1 cut(s) 124
MboI GATC 2 cut(s) 215, 445
MboII GAAGA 2 cut(s) 284, 391
MhlI GDGCHC 1 cut(s) 150
MluCI AATT 2 cut(s) 173, 316
MlyI GAGTC 2 cut(s) 169, 524
MmeI TCCRAC 2 cut(s) 33, 364
MnlI CCTC 2 cut(s) 251, 528
MseI TTAA 1 cut(s) 260
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 232, 325
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 287, 503
NdeII GATC 2 cut(s) 215, 445
NlaIII CATG 5 cut(s) 160, 301, 491, 506, 530
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 11, 44
NspI RCATGY 3 cut(s) 301, 506, 530
PaeI GCATGC 1 cut(s) 530
PagI TCATGA 1 cut(s) 487
PciSI GCTCTTC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 1 cut(s) 45
Pfl23II CGTACG 1 cut(s) 23
PkrI GCNGC 2 cut(s) 230, 330
PleI GAGTC 2 cut(s) 168, 523
PpsI GAGTC 2 cut(s) 168, 523
PspLI CGTACG 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 147
RsaI GTAC 4 cut(s) 25, 179, 236, 501
RsaNI GTAC 4 cut(s) 24, 178, 235, 500
RseI CAYNNNNRTG 1 cut(s) 155
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 260
SatI GCNGC 2 cut(s) 229, 329
Sau3AI GATC 2 cut(s) 215, 445
SchI GAGTC 2 cut(s) 169, 524
SduI GDGCHC 1 cut(s) 150
SetI ASST 4 cut(s) 18, 144, 346, 361
SmiMI CAYNNNNRTG 1 cut(s) 155
SphI GCATGC 1 cut(s) 530
Sse9I AATT 2 cut(s) 173, 316
SsiI CCGC 6 cut(s) 118, 124, 229, 386, 416, 497
SspI AATATT 1 cut(s) 223
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 18
TaqI TCGA 3 cut(s) 218, 347, 436
TasI AATT 2 cut(s) 173, 316
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 231
Tru1I TTAA 1 cut(s) 260
Tru9I TTAA 1 cut(s) 260
TseFI GTSAC 2 cut(s) 11, 44
TseI GCWGC 1 cut(s) 328
Tsp45I GTSAC 2 cut(s) 11, 44
TspDTI ATGAA 2 cut(s) 310, 353
TspGWI ACGGA 1 cut(s) 228
XceI RCATGY 3 cut(s) 301, 506, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.