Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000186

Physical Location & Seq

Genomic Coordinates Forward (+)

3905579 .. 3906818

Gene Structure 1240 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11608.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAGAAGCATTGGAGTAGGTTGATGACAGTTGGTCTACCTGAATTTCCCATGTGTCCGAAGTATTCAAGTTACTTCATTGAGAATCATGGTAAAATTGTGCTATCTATTCATCACTTAGGGTCTATTAGTATCTACATTGTTGGAGAGGATCAAGAATGTCAAAAAGTTAAATATTCTTCTATGGATCGTTCAGTTGGTGGTTCTGGTTGCTACTATGTTCCGAGCTTGCTTCCGGTTCCCGGTTTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

84

Amino Acids

9.47

Weight (kDa)

8.48

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	3 - 80	5.1e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000186)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Species

Orthologous Gene IDs

arabidopsis_thaliana

AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	37
AclWI	GGATC	2 cut(s)	159, 195
AcsI	RAATTY	1 cut(s)	44
AfiI	CCNNNNNNNGG	1 cut(s)	242
AgsI	TTSAA	1 cut(s)	69
AhdI	GACNNNNNGTC	1 cut(s)	33
AluBI	AGCT	1 cut(s)	228
AluI	AGCT	1 cut(s)	228
AlwI	GGATC	2 cut(s)	159, 195
ApoI	RAATTY	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	243
BcnI	CCSGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	253
Bme1390I	CCNGG	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	33
BmiI	GGNNCC	1 cut(s)	240
BmrFI	CCNGG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	243
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	236, 243
BslI	CCNNNNNNNGG	1 cut(s)	242
Bsp143I	GATC	2 cut(s)	151, 187
BspLI	GGNNCC	1 cut(s)	240
BspPI	GGATC	2 cut(s)	159, 195
BssMI	GATC	2 cut(s)	151, 187
Bst4CI	ACNGT	1 cut(s)	31
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	1 cut(s)	118
BstKTI	GATC	2 cut(s)	154, 190
BstMBI	GATC	2 cut(s)	151, 187
BstSCI	CCNGG	1 cut(s)	241
Cac8I	GCNNGC	1 cut(s)	230
CviAII	CATG	2 cut(s)	52, 89
CviJI	RGCY	1 cut(s)	228
CviKI_1	RGCY	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	2 cut(s)	153, 189
DpnII	GATC	2 cut(s)	151, 187
DriI	GACNNNNNGTC	1 cut(s)	33
Eam1105I	GACNNNNNGTC	1 cut(s)	33
FaeI	CATG	2 cut(s)	55, 92
FaiI	YATR	4 cut(s)	53, 90, 185, 219
FatI	CATG	2 cut(s)	51, 88
FblI	GTMKAC	1 cut(s)	37
FspBI	CTAG	1 cut(s)	253
HapII	CCGG	2 cut(s)	236, 243
Hin1II	CATG	2 cut(s)	55, 92
HinfI	GANTC	1 cut(s)	85
HpaII	CCGG	2 cut(s)	236, 243
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	2 cut(s)	60, 225
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	31
HpyF3I	CTNAG	1 cut(s)	118
Hsp92II	CATG	2 cut(s)	55, 92
Kzo9I	GATC	2 cut(s)	151, 187
LpnPI	CCDG	3 cut(s)	54, 192, 249
MaeI	CTAG	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	71
MalI	GATC	2 cut(s)	153, 189
MboI	GATC	2 cut(s)	151, 187
MboII	GAAGA	2 cut(s)	16, 171
MluCI	AATT	2 cut(s)	44, 96
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	1 cut(s)	142
MseI	TTAA	1 cut(s)	171
MspI	CCGG	2 cut(s)	236, 243
MspR9I	CCNGG	1 cut(s)	243
NciI	CCSGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	151, 187
NlaIII	CATG	2 cut(s)	55, 92
NlaIV	GGNNCC	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	151, 187
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	3 cut(s)	23, 43, 230
SgeI	CNNG	9 cut(s)	53, 64, 81, 101, 167, 219, 237, 241, 248
Sse9I	AATT	2 cut(s)	44, 96
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	31
TasI	AATT	2 cut(s)	44, 96
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TspDTI	ATGAA	3 cut(s)	17, 67, 101
XapI	RAATTY	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	37
XspI	CTAG	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.