AT3G17710

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6055495 .. 6056778
1284 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17710.1

Sequence Viewer

Length: 1107 bp
ATGGCGTCGGTGAAGTTGCCGTGGGATTTGGAGGAAGAGATACTGTCTCGGCTTCCACCTCGATCTCTTGTTCGGTTCAGGACCGTATGTAAACACTGGAACGGTCTTTTCAGCGACAAGAGGTTTGTCAAAAAGCACTTGGTCCGTGCCCGTCCCCAATTCATCTTCCTTACCGAATCGAAGAAGATGTACTCGATAGAGATCGATCTGGGTGGAACGATAGAGGTGCGTGAGGTACCCTACGATTTTCATTGTCAGCCTATGAAGAAGAATTTTACAACTATCATGGCTTGCGATGGGTTATTGTTTCGTGATTTTTGGAAACAAGGTGTTGCGGTTTGGAATCCGTGGTTGAGACAGGTTGGGTGGATCGAGTATGAGGATAAAGGTTTCCGTTTTTGCGGTGTAGGATACGATAGTTGTAAACCCGATAAGTGTTACAAGATCTTGGGGTATTTTAATTGTACGCGTAGACTCAGCGACTCTCTCCAGGAAGGTTACTACCAAGCTGCGATCTACGAGTGTGCATCGCAGGCGTTCAAATTTATTGATACCCCTAACCCTTTCAACCTGTGGCCCAACAAGGATCCTTTGTCCGTGAACGGGAATCTTTATTGGCTTGCTCATAACCACCCTGAGACTCTTGAGTATTTCATCGAAACCTTTGATTTCTCCATGGAGATTTTCAAACCCTTTTGTCTACTGCCGTGTCGGAAGGACTTTGGTAGCAATGAACTTGTCCTGGCGGTTTTTAAGGAAGATCGGTTTTCATTGTTAAAGCAATGCTTCGAAACAACGAAGATTGAGATTTGGGTAACAAAGATGAAGATTGATAGAGAGGAGGAAGTGGTGTGGATAAAGTTTATGACATTGCCGACAACCAACTTGCCTAATCTAGATGATACTTATTGTTGCAGTAGTTACTTCATCTTTGACAAGACCATAATCATGTGTTGTGGCGATTACAAAACTGGAGCTACTTGCATCTATATGGTGAGGGGAGATATGTTCAAGAAGATTCAGATCAATTCTGGGATTTTTCAGTTTTCTTACTGTGTCTATCTTCCAAATTTGATCTCGGTTCCTTTTGAATCACATCAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

368

Amino Acids

43.42

Weight (kDa)

7.4

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 44 2.6e-09 F-box domain
F-box-like PF12937 6 - 42 6.1e-07 F-box-like
FBA_1 PF07734 53 - 361 3.9e-79 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 235
AccI GTMKAC 2 cut(s) 472, 700
AccII CGCG 1 cut(s) 469
AciI CCGC 3 cut(s) 335, 402, 746
AclWI GGATC 3 cut(s) 377, 581, 594
AcsI RAATTY 3 cut(s) 271, 542, 1069
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 191, 237, 466
AfiI CCNNNNNNNGG 1 cut(s) 603
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 5 cut(s) 541, 568, 688, 1012, 1091
AjnI CCWGG 2 cut(s) 489, 741
AluBI AGCT 2 cut(s) 509, 977
AluI AGCT 2 cut(s) 509, 977
Alw26I GTCTC 3 cut(s) 51, 349, 632
AlwI GGATC 3 cut(s) 377, 581, 594
AoxI GGCC 1 cut(s) 575
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 3 cut(s) 271, 542, 1069
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
Asp718I GGTACC 1 cut(s) 235
AspS9I GGNCC 3 cut(s) 81, 142, 576
AsuHPI GGTGA 2 cut(s) 22, 1006
AsuII TTCGAA 1 cut(s) 789
AvaII GGWCC 2 cut(s) 81, 142
BaeGI GKGCMC 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 403, 436
BamHI GGATCC 1 cut(s) 586
BanI GGYRCC 1 cut(s) 235
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbvI GCAGC 1 cut(s) 496
BccI CCATC 1 cut(s) 290
BceAI ACGGC 2 cut(s) 4, 691
BcgI CGANNNNNNTGC 2 cut(s) 208, 242
BciT130I CCWGG 2 cut(s) 491, 743
BciVI GTATCC 1 cut(s) 404
BcoDI GTCTC 3 cut(s) 51, 349, 632
BfaI CTAG 1 cut(s) 896
BfuI GTATCC 1 cut(s) 404
BglII AGATCT 1 cut(s) 444
BisI GCNGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 2 cut(s) 491, 743
Bme18I GGWCC 2 cut(s) 81, 142
BmgT120I GGNCC 3 cut(s) 81, 142, 576
BmiI GGNNCC 3 cut(s) 237, 588, 1083
BmrFI CCNGG 2 cut(s) 491, 743
BmsI GCATC 2 cut(s) 536, 993
BpmI CTGGAG 2 cut(s) 473, 993
Bpu14I TTCGAA 1 cut(s) 789
BpuEI CTTGAG 1 cut(s) 665
Bsa29I ATCGAT 1 cut(s) 204
BsaBI GATNNNNATC 2 cut(s) 200, 1022
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 20, 347, 675
Bsc4I CCNNNNNNNGG 1 cut(s) 603
Bse1I ACTGG 2 cut(s) 101, 976
Bse3DI GCAATG 3 cut(s) 736, 788, 869
Bse8I GATNNNNATC 2 cut(s) 200, 1022
BseBI CCWGG 2 cut(s) 491, 743
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 20, 347, 675
BseJI GATNNNNATC 2 cut(s) 200, 1022
BseLI CCNNNNNNNGG 1 cut(s) 603
BseMI GCAATG 3 cut(s) 736, 788, 869
BseMII CTCAG 2 cut(s) 490, 627
BseNI ACTGG 2 cut(s) 101, 976
BseRI GAGGAG 1 cut(s) 854
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 1 cut(s) 496
Bsh1236I CGCG 1 cut(s) 469
BshFI GGCC 1 cut(s) 577
BshNI GGYRCC 1 cut(s) 235
BshVI ATCGAT 1 cut(s) 204
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 603
BsmAI GTCTC 3 cut(s) 51, 349, 632
BsmFI GGGAC 1 cut(s) 138
BsnI GGCC 1 cut(s) 577
Bsp119I TTCGAA 1 cut(s) 789
Bsp1286I GDGCHC 1 cut(s) 151
Bsp19I CCATGG 1 cut(s) 675
BspACI CCGC 3 cut(s) 335, 402, 746
BspANI GGCC 1 cut(s) 577
BspCNI CTCAG 2 cut(s) 489, 628
BspDI ATCGAT 1 cut(s) 204
BspFNI CGCG 1 cut(s) 469
BspLI GGNNCC 3 cut(s) 237, 588, 1083
BspPI GGATC 3 cut(s) 377, 581, 594
BspT104I TTCGAA 1 cut(s) 789
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 3 cut(s) 736, 788, 869
BsrI ACTGG 2 cut(s) 101, 976
BssECI CCNNGG 3 cut(s) 20, 347, 675
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 2 cut(s) 491, 743
Bst4CI ACNGT 4 cut(s) 45, 85, 104, 1055
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 789
BstC8I GCNNGC 3 cut(s) 292, 534, 621
BstDEI CTNAG 2 cut(s) 476, 636
BstDSI CCRYGG 3 cut(s) 20, 347, 675
BstFNI CGCG 1 cut(s) 469
BstMAI GTCTC 3 cut(s) 51, 349, 632
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstNI CCWGG 2 cut(s) 491, 743
BstSCI CCNGG 2 cut(s) 489, 741
BstSLI GKGCMC 1 cut(s) 151
BstUI CGCG 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 496
BstX2I RGATCY 2 cut(s) 444, 586
BstYI RGATCY 2 cut(s) 444, 586
Bsu15I ATCGAT 1 cut(s) 204
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 577
BsuTUI ATCGAT 1 cut(s) 204
BtgI CCRYGG 3 cut(s) 20, 347, 675
BtgZI GCGATG 2 cut(s) 309, 513
BtsIMutI CAGTG 1 cut(s) 94
Cac8I GCNNGC 3 cut(s) 292, 534, 621
Cfr13I GGNCC 3 cut(s) 81, 142, 576
ClaI ATCGAT 1 cut(s) 204
Csp6I GTAC 3 cut(s) 190, 236, 465
CviAII CATG 3 cut(s) 286, 676, 949
CviJI RGCY 7 cut(s) 52, 259, 290, 509, 577, 619, 977
CviKI_1 RGCY 7 cut(s) 52, 259, 290, 509, 577, 619, 977
CviQI GTAC 3 cut(s) 190, 236, 465
DdeI CTNAG 2 cut(s) 476, 636
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 675
Eco47I GGWCC 2 cut(s) 81, 142
EcoRII CCWGG 2 cut(s) 489, 741
EcoT14I CCWWGG 1 cut(s) 675
ErhI CCWWGG 1 cut(s) 675
FaeI CATG 3 cut(s) 289, 679, 952
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 285, 675, 948
FblI GTMKAC 2 cut(s) 472, 700
Fnu4HI GCNGC 1 cut(s) 510
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 1 cut(s) 896
GluI GCNGC 1 cut(s) 510
GsuI CTGGAG 2 cut(s) 473, 993
HaeIII GGCC 1 cut(s) 577
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 289, 679, 952
HinfI GANTC 8 cut(s) 176, 343, 474, 482, 607, 640, 1018, 1091
HphI GGTGA 2 cut(s) 22, 1006
Hpy166II GTNNAC 5 cut(s) 92, 425, 473, 601, 701
Hpy188I TCNGA 2 cut(s) 714, 1023
Hpy188III TCNNGA 5 cut(s) 79, 311, 644, 896, 1012
Hpy8I GTNNAC 5 cut(s) 92, 425, 473, 601, 701
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 488, 709
HpyCH4III ACNGT 4 cut(s) 45, 85, 104, 1055
HpyCH4V TGCA 3 cut(s) 527, 915, 984
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 2 cut(s) 476, 636
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 289, 679, 952
KpnI GGTACC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 974
Lsp1109I GCAGC 1 cut(s) 496
LweI GCATC 2 cut(s) 536, 993
MaeI CTAG 1 cut(s) 896
MaeIII GTNAC 4 cut(s) 437, 497, 814, 920
MflI RGATCY 2 cut(s) 444, 586
MhlI GDGCHC 1 cut(s) 151
MluCI AATT 6 cut(s) 158, 271, 460, 542, 1027, 1069
MluI ACGCGT 1 cut(s) 467
MlyI GAGTC 3 cut(s) 468, 476, 634
MmeI TCCRAC 1 cut(s) 692
MnlI CCTC 9 cut(s) 25, 69, 114, 217, 226, 373, 832, 835, 990
MseI TTAA 4 cut(s) 459, 753, 776, 1105
MslI CAYNNNNRTG 2 cut(s) 947, 989
MspR9I CCNGG 2 cut(s) 491, 743
MvaI CCWGG 2 cut(s) 491, 743
MvnI CGCG 1 cut(s) 469
MwoI GCNNNNNNNGC 1 cut(s) 533
NcoI CCATGG 1 cut(s) 675
NlaIII CATG 3 cut(s) 289, 679, 952
NlaIV GGNNCC 3 cut(s) 237, 588, 1083
NmeAIII GCCGAG 1 cut(s) 28
NspV TTCGAA 1 cut(s) 789
PfeI GAWTC 5 cut(s) 176, 343, 607, 1018, 1091
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 1 cut(s) 511
PleI GAGTC 3 cut(s) 468, 476, 634
PpsI GAGTC 3 cut(s) 468, 476, 634
Psp6I CCWGG 2 cut(s) 489, 741
PspGI CCWGG 2 cut(s) 489, 741
PspN4I GGNNCC 3 cut(s) 237, 588, 1083
PspPI GGNCC 3 cut(s) 81, 142, 576
PsuI RGATCY 2 cut(s) 444, 586
RsaI GTAC 3 cut(s) 191, 237, 466
RsaNI GTAC 3 cut(s) 190, 236, 465
RseI CAYNNNNRTG 2 cut(s) 947, 989
SaqAI TTAA 4 cut(s) 459, 753, 776, 1105
SatI GCNGC 1 cut(s) 510
Sau96I GGNCC 3 cut(s) 81, 142, 576
SchI GAGTC 3 cut(s) 468, 476, 634
ScrFI CCNGG 2 cut(s) 491, 743
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 2 cut(s) 536, 993
SfuI TTCGAA 1 cut(s) 789
SinI GGWCC 2 cut(s) 81, 142
SmiMI CAYNNNNRTG 2 cut(s) 947, 989
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
Sse9I AATT 6 cut(s) 158, 271, 460, 542, 1027, 1069
SsiI CCGC 3 cut(s) 335, 402, 746
SspMI CTAG 1 cut(s) 896
StyD4I CCNGG 2 cut(s) 489, 741
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 4 cut(s) 45, 85, 104, 1055
TaqI TCGA 7 cut(s) 61, 179, 194, 204, 372, 657, 789
TasI AATT 6 cut(s) 158, 271, 460, 542, 1027, 1069
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 5 cut(s) 176, 343, 607, 1018, 1091
Tru1I TTAA 4 cut(s) 459, 753, 776, 1105
Tru9I TTAA 4 cut(s) 459, 753, 776, 1105
TscAI CASTG 1 cut(s) 101
TseI GCWGC 1 cut(s) 509
TspDTI ATGAA 8 cut(s) 151, 239, 278, 643, 747, 759, 839, 916
TspGWI ACGGA 4 cut(s) 134, 336, 383, 586
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 2 cut(s) 81, 142
XapI RAATTY 3 cut(s) 271, 542, 1069
XbaI TCTAGA 1 cut(s) 895
XmiI GTMKAC 2 cut(s) 472, 700
XspI CTAG 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.