AT3G23680

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Reverse (-)
8526366 .. 8527173
808 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G23680.1

Sequence Viewer

Length: 708 bp
ATGTGCAGGTTCTCTTACGCTCTTGGATACGTGAATACGGATTCTTGTCGTAACTACAAGTTGTTGAGGTTGATAGATTATTACTACAATGCACACGAGAAGCAATTCTTTTGCACGTACTGGTGTGCTGCAAAAAGGAACGTAGATGTAAATGAAGTCTTTGCTAATCGCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCTCTTCTGCCTCTGCCGTTTAGTGGTGGGCATATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTATCGATTACGACCAAGATTGAGACTGGAGAGGTGTTGTGGAGCAAGTTCTTGAGAGTGGAAACAGCTGGATTTGATAGTTATGTTCCTATTATAAATGGAAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCATTGGTTTTGAAGATGGGAATCGCCACACAATTAACATCATTGGAGAGGCTGGATACTTGAGGGCATTGGATCTCGTTGGAGATTATGGAGACCAAAGATGTAAGACAGATCTGTGCTCTTATGTTCCAAGTTTAGTGCAAATCAAGCAACCTGAAGGAGGGGAAAGGGAAGAAGAAAGCGAATTGGAGAAGCTTCGATATGATGAAAACATGTCGAGACTTGTCTTACTTGAAACGAATCCATGA

Protein Analysis

235

Amino Acids

27.07

Weight (kDa)

4.81

Isoelectric Point (pI)

47.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 39 - 202 1.8e-42 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 540
AcuI CTGAAG 2 cut(s) 278, 636
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 230, 620
AflIII ACRYGT 1 cut(s) 672
AgsI TTSAA 2 cut(s) 473, 695
AluBI AGCT 4 cut(s) 280, 322, 395, 655
AluI AGCT 4 cut(s) 280, 322, 395, 655
Alw21I GWGCWC 1 cut(s) 581
Alw26I GTCTC 3 cut(s) 344, 546, 673
AlwI GGATC 1 cut(s) 540
ApeKI GCWGC 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 206
AvaII GGWCC 1 cut(s) 206
BauI CACGAG 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 581
BbvI GCAGC 1 cut(s) 115
BccI CCATC 1 cut(s) 470
BceAI ACGGC 1 cut(s) 208
BciVI GTATCC 2 cut(s) 20, 509
BcoDI GTCTC 3 cut(s) 344, 546, 673
BfuI GTATCC 2 cut(s) 20, 509
BglII AGATCT 1 cut(s) 571
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 400, 541
Bsa29I ATCGAT 1 cut(s) 332
BsaAI YACGTR 2 cut(s) 31, 117
BsaBI GATNNNNATC 1 cut(s) 480
BsaI GGTCTC 1 cut(s) 546
Bsc4I CCNNNNNNNGG 2 cut(s) 230, 620
Bse1I ACTGG 2 cut(s) 125, 358
Bse8I GATNNNNATC 1 cut(s) 480
BseCI ATCGAT 1 cut(s) 332
BseJI GATNNNNATC 1 cut(s) 480
BseLI CCNNNNNNNGG 2 cut(s) 230, 620
BseNI ACTGG 2 cut(s) 125, 358
BseRI GAGGAG 1 cut(s) 461
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 25
BshVI ATCGAT 1 cut(s) 332
BsiHKAI GWGCWC 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 230, 620
BsmAI GTCTC 3 cut(s) 344, 546, 673
Bso31I GGTCTC 1 cut(s) 546
Bsp1286I GDGCHC 1 cut(s) 581
Bsp143I GATC 2 cut(s) 532, 571
BspACI CCGC 1 cut(s) 284
BspDI ATCGAT 1 cut(s) 332
BspPI GGATC 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 546
BsrI ACTGG 2 cut(s) 125, 358
BssMI GATC 2 cut(s) 532, 571
BssSI CACGAG 1 cut(s) 95
Bst2BI CACGAG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 248
Bst6I CTCTTC 2 cut(s) 216, 267
BstBAI YACGTR 2 cut(s) 31, 117
BstC8I GCNNGC 1 cut(s) 282
BstENI CCTNNNNNAGG 1 cut(s) 618
BstKTI GATC 2 cut(s) 535, 574
BstMAI GTCTC 3 cut(s) 344, 546, 673
BstMBI GATC 2 cut(s) 532, 571
BstMWI GCNNNNNNNGC 1 cut(s) 607
BstNSI RCATGY 1 cut(s) 676
BstV1I GCAGC 1 cut(s) 115
BstX2I RGATCY 2 cut(s) 532, 571
BstYI RGATCY 2 cut(s) 532, 571
Bsu15I ATCGAT 1 cut(s) 332
BsuI GTATCC 2 cut(s) 20, 509
BsuTUI ATCGAT 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 206
ClaI ATCGAT 1 cut(s) 332
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 673, 705
CviJI RGCY 5 cut(s) 280, 322, 395, 512, 655
CviKI_1 RGCY 5 cut(s) 280, 322, 395, 512, 655
CviQI GTAC 1 cut(s) 118
DpnI GATC 2 cut(s) 534, 573
DpnII GATC 2 cut(s) 532, 571
Eam1104I CTCTTC 2 cut(s) 216, 267
EarI CTCTTC 2 cut(s) 216, 267
Eco31I GGTCTC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 2 cut(s) 278, 636
EcoNI CCTNNNNNAGG 1 cut(s) 618
FaeI CATG 2 cut(s) 676, 708
FalI AAGNNNNNCTT 4 cut(s) 92, 124, 264, 296
FatI CATG 2 cut(s) 672, 704
FauNDI CATATG 1 cut(s) 316
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 129
GsuI CTGGAG 1 cut(s) 375
Hin1II CATG 2 cut(s) 676, 708
HindIII AAGCTT 2 cut(s) 278, 653
HinfI GANTC 4 cut(s) 41, 305, 481, 700
Hpy188III TCNNGA 2 cut(s) 379, 678
HpyAV CCTTC 1 cut(s) 611
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4IV ACGT 4 cut(s) 30, 116, 141, 254
HpyCH4V TGCA 5 cut(s) 6, 92, 114, 131, 601
HpyF10VI GCNNNNNNNGC 1 cut(s) 607
HpySE526I ACGT 4 cut(s) 30, 116, 141, 254
Hsp92II CATG 2 cut(s) 676, 708
Kzo9I GATC 2 cut(s) 532, 571
LmnI GCTCC 1 cut(s) 369
LpnPI CCDG 5 cut(s) 106, 339, 381, 498, 627
Lsp1109I GCAGC 1 cut(s) 115
MaeII ACGT 4 cut(s) 30, 116, 141, 254
MaeIII GTNAC 1 cut(s) 50
MalI GATC 2 cut(s) 534, 573
MboI GATC 2 cut(s) 532, 571
MboII GAAGA 7 cut(s) 203, 284, 427, 463, 485, 644, 647
MflI RGATCY 2 cut(s) 532, 571
MhlI GDGCHC 1 cut(s) 581
MluCI AATT 3 cut(s) 104, 492, 644
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 8 cut(s) 60, 219, 228, 352, 439, 502, 516, 614
MroXI GAANNNNTTC 1 cut(s) 104
MseI TTAA 2 cut(s) 173, 495
MspA1I CMGCKG 1 cut(s) 395
MwoI GCNNNNNNNGC 1 cut(s) 607
NdeI CATATG 1 cut(s) 316
NdeII GATC 2 cut(s) 532, 571
NlaIII CATG 2 cut(s) 676, 708
NspI RCATGY 1 cut(s) 676
PciI ACATGT 1 cut(s) 672
PdmI GAANNNNTTC 1 cut(s) 104
PfeI GAWTC 4 cut(s) 41, 305, 481, 700
PkrI GCNGC 1 cut(s) 130
Ppu21I YACGTR 2 cut(s) 31, 117
PscI ACATGT 1 cut(s) 672
PsiI TTATAA 1 cut(s) 422
PspPI GGNCC 1 cut(s) 206
PsuI RGATCY 2 cut(s) 532, 571
PvuII CAGCTG 1 cut(s) 395
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 2 cut(s) 173, 495
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 2 cut(s) 532, 571
Sau96I GGNCC 1 cut(s) 206
SduI GDGCHC 1 cut(s) 581
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 379, 520
SmoI CTYRAG 2 cut(s) 379, 520
Sse9I AATT 3 cut(s) 104, 492, 644
SsiI CCGC 1 cut(s) 284
TaaI ACNGT 1 cut(s) 248
TaiI ACGT 4 cut(s) 33, 119, 144, 257
TaqI TCGA 3 cut(s) 332, 658, 677
TasI AATT 3 cut(s) 104, 492, 644
TfiI GAWTC 4 cut(s) 41, 305, 481, 700
Tru1I TTAA 2 cut(s) 173, 495
Tru9I TTAA 2 cut(s) 173, 495
TseI GCWGC 1 cut(s) 128
TspDTI ATGAA 4 cut(s) 168, 318, 427, 681
TspGWI ACGGA 1 cut(s) 53
VpaK11BI GGWCC 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 618
XceI RCATGY 1 cut(s) 676
XmnI GAANNNNTTC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.