AT3G20690

F-box LRR-repeat kelch-repeat protein At1g11620

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
7231570 .. 7232682
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G20690.1

Sequence Viewer

Length: 1113 bp
ATGATGATGTCCGATCTTCCACATGATTTGGTGGAGGAGATTCTCTCTAGGCTTCCGTTGATATCTTTAAAAGCAATGCGATCTACTTGCAAAACCTGGAACGTTCTATCCAAACATCGGAGCTTTGCAAATAAGCACATCGGCAATGTAACCGCATCAGGGAAAAGAGATTTGATAATGATTAAAGATTGTAAGGTTTATTCAATTGGCGTCAATCTCCATGGTATTCAGAACAACAACAACATTATTGATCTATCTATAAAGAATAAAGGTATTCTTCACCTAGAAAATTTAGATCTAATATTCAAGGAAATATTCAATGTCTTTCACTGCAACGGTTTATTGTTGTTATACGGAAGCATCACTGATGATAGTATTAGGCTTGTGGTTTGTAACCCGTATTGGGGGAAACGTGAATGGGTCAAACGCATAAATAATTTTGCAAGTTTTGACAAACTTGCTTTCGGATACGACAAATCTTGTGGTTGCCACAAAATCTTAAGGGTTTTCGATAGTTACCCTAATAGACTTGAAATCTACAATTTGAGGTCTAATTCACGGATGGTTTCTAGTTTCCCTCTTAAATGGGATATAGCGTTTATGCAAGATGGCGTGTCTTTGAAGGGAAATACTTACTGGTATGCTAAAGATAGAAGATCAGAAGATTGTTATTTAATATGCTTTGATTTTACTAGAGAGAGATTCGGACCGCGTCTGCCTCTACCTCAACCCTTCATCGATGAATTTTTGGGGAGTCTATATGTGGTAAGAGAAGAGAAGCTTGCGGTGTTAGTAAAGCGGTGGCGGGGTGGCAAATCTGAGATCGATATTTGGGTTACGAACAAGATTGAGCCCGATGAAGTCTCGTGGAGCAAGTTCTTAAAAGTTGATAACACACCAAGATTTTTTCTGACTGAGGGATACTTGATTTATGATGAAGAGAAAGTCGTAGTGTTTTTTAATAAAGAGGAGACAGAGGGGCTCAAATCCACTGTCCACATAGCTTACATCGTTGGAGAGAATGGTTATTTCAGAAGAGCGGATCTCCGTGAACCTCTATATCAACCACTTTGCCGTCTTGTGTGCTCTTATGTACCAAGTTCTGTGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

370

Amino Acids

43.12

Weight (kDa)

8.85

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 42 1.2e-09 F-box domain
F-box-like PF12937 3 - 40 5.5e-06 F-box-like
FBA_1 PF07734 58 - 370 6.5e-83 F-box associated beta propeller domain
FBA_3 PF08268 108 - 292 1.6e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1040
AccII CGCG 1 cut(s) 712
AciI CCGC 6 cut(s) 153, 710, 785, 799, 805, 1040
AclI AACGTT 1 cut(s) 102
AclWI GGATC 1 cut(s) 1050
AcsI RAATTY 2 cut(s) 289, 743
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 1095
AfiI CCNNNNNNNGG 4 cut(s) 117, 159, 403, 404
AflII CTTAAG 1 cut(s) 499
AgsI TTSAA 5 cut(s) 204, 307, 319, 533, 622
AjnI CCWGG 1 cut(s) 95
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 123, 781, 1004
AluI AGCT 3 cut(s) 123, 781, 1004
Alw21I GWGCWC 1 cut(s) 1088
Alw26I GTCTC 2 cut(s) 868, 965
AlwI GGATC 1 cut(s) 1050
ApoI RAATTY 2 cut(s) 289, 743
ArsI GACNNNNNNTTYG 2 cut(s) 978, 1010
AspS9I GGNCC 1 cut(s) 707
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 1 cut(s) 707
BanII GRGCYC 2 cut(s) 855, 984
BauI CACGAG 1 cut(s) 865
Bbv12I GWGCWC 1 cut(s) 1088
BccI CCATC 2 cut(s) 556, 602
BceAI ACGGC 1 cut(s) 1059
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 97
BciVI GTATCC 2 cut(s) 461, 914
BcoDI GTCTC 2 cut(s) 868, 965
BfaI CTAG 4 cut(s) 48, 284, 570, 693
BfrI CTTAAG 1 cut(s) 499
BfuI GTATCC 2 cut(s) 461, 914
BglII AGATCT 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 707
BmgT120I GGNCC 1 cut(s) 707
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 164, 369
BplI GAGNNNNNCTC 4 cut(s) 29, 61, 1029, 1061
Bsa29I ATCGAT 2 cut(s) 738, 825
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 220
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 159, 403, 404
Bse1I ACTGG 1 cut(s) 641
Bse3DI GCAATG 2 cut(s) 81, 151
BseBI CCWGG 1 cut(s) 97
BseCI ATCGAT 2 cut(s) 738, 825
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 567
BseLI CCNNNNNNNGG 4 cut(s) 117, 159, 403, 404
BseMI GCAATG 2 cut(s) 81, 151
BseMII CTCAG 2 cut(s) 810, 906
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 2 cut(s) 50, 983
Bsh1236I CGCG 1 cut(s) 712
BshVI ATCGAT 2 cut(s) 738, 825
BsiHKAI GWGCWC 1 cut(s) 1088
BslI CCNNNNNNNGG 4 cut(s) 117, 159, 403, 404
BsmAI GTCTC 2 cut(s) 868, 965
Bsp1286I GDGCHC 3 cut(s) 855, 984, 1088
Bsp143I GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
Bsp19I CCATGG 1 cut(s) 220
BspACI CCGC 6 cut(s) 153, 710, 785, 799, 805, 1040
BspCNI CTCAG 2 cut(s) 811, 907
BspDI ATCGAT 2 cut(s) 738, 825
BspFNI CGCG 1 cut(s) 712
BspPI GGATC 1 cut(s) 1050
BspQI GCTCTTC 1 cut(s) 1030
BspTI CTTAAG 1 cut(s) 499
BsrBI CCGCTC 1 cut(s) 1040
BsrDI GCAATG 2 cut(s) 81, 151
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
BssNI GRCGYC 1 cut(s) 210
BssSI CACGAG 1 cut(s) 865
BssT1I CCWWGG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 865
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 2 cut(s) 338, 994
Bst6I CTCTTC 3 cut(s) 768, 933, 1030
BstACI GRCGYC 1 cut(s) 210
BstAFI CTTAAG 1 cut(s) 499
BstC8I GCNNGC 1 cut(s) 783
BstDEI CTNAG 2 cut(s) 819, 915
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 567
BstFNI CGCG 1 cut(s) 712
BstKTI GATC 7 cut(s) 16, 83, 253, 298, 659, 825, 1045
BstMAI GTCTC 2 cut(s) 868, 965
BstMBI GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 1 cut(s) 95
BstUI CGCG 1 cut(s) 712
BstX2I RGATCY 2 cut(s) 295, 1042
BstYI RGATCY 2 cut(s) 295, 1042
Bsu15I ATCGAT 2 cut(s) 738, 825
BsuI GTATCC 2 cut(s) 461, 914
BsuTUI ATCGAT 2 cut(s) 738, 825
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 363, 990
Cac8I GCNNGC 1 cut(s) 783
Cfr13I GGNCC 1 cut(s) 707
ClaI ATCGAT 2 cut(s) 738, 825
CpoI CGGWCCG 1 cut(s) 707
CseI GACGC 2 cut(s) 199, 701
Csp6I GTAC 1 cut(s) 1094
CspCI CAANNNNNGTGG 4 cut(s) 9, 44, 463, 498
CspI CGGWCCG 1 cut(s) 707
CviAII CATG 2 cut(s) 23, 221
CviJI RGCY 7 cut(s) 52, 123, 382, 781, 853, 982, 1004
CviKI_1 RGCY 7 cut(s) 52, 123, 382, 781, 853, 982, 1004
CviQI GTAC 1 cut(s) 1094
DdeI CTNAG 2 cut(s) 819, 915
DpnI GATC 7 cut(s) 15, 82, 252, 297, 658, 824, 1044
DpnII GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
DraI TTTAAA 1 cut(s) 69
Eam1104I CTCTTC 3 cut(s) 768, 933, 1030
EarI CTCTTC 3 cut(s) 768, 933, 1030
Eco130I CCWWGG 1 cut(s) 220
Eco24I GRGCYC 2 cut(s) 855, 984
Eco32I GATATC 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 707
EcoRII CCWGG 1 cut(s) 95
EcoRV GATATC 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 220
EcoT38I GRGCYC 2 cut(s) 855, 984
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 2 cut(s) 26, 224
FalI AAGNNNNNCTT 4 cut(s) 261, 293, 765, 797
FatI CATG 2 cut(s) 22, 220
FauI CCCGC 1 cut(s) 798
FokI GGATG 1 cut(s) 574
FriOI GRGCYC 2 cut(s) 855, 984
FspBI CTAG 4 cut(s) 48, 284, 570, 693
HgaI GACGC 2 cut(s) 199, 701
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 2 cut(s) 26, 224
HindIII AAGCTT 1 cut(s) 779
HinfI GANTC 3 cut(s) 40, 702, 754
HphI GGTGA 1 cut(s) 272
Hpy166II GTNNAC 2 cut(s) 997, 1052
Hpy188I TCNGA 9 cut(s) 13, 120, 231, 467, 661, 707, 820, 912, 1034
Hpy8I GTNNAC 2 cut(s) 997, 1052
HpyAV CCTTC 2 cut(s) 616, 742
HpyCH4III ACNGT 2 cut(s) 338, 994
HpyCH4IV ACGT 2 cut(s) 102, 412
HpyCH4V TGCA 5 cut(s) 90, 128, 333, 443, 604
HpyF3I CTNAG 2 cut(s) 819, 915
HpySE526I ACGT 2 cut(s) 102, 412
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 2 cut(s) 26, 224
Kzo9I GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
LguI GCTCTTC 1 cut(s) 1030
LmnI GCTCC 2 cut(s) 120, 870
LpnPI CCDG 4 cut(s) 82, 109, 144, 622
LweI GCATC 2 cut(s) 164, 369
MaeI CTAG 4 cut(s) 48, 284, 570, 693
MaeII ACGT 2 cut(s) 102, 412
MaeIII GTNAC 4 cut(s) 148, 392, 515, 835
MalI GATC 7 cut(s) 15, 82, 252, 297, 658, 824, 1044
MbiI CCGCTC 1 cut(s) 1040
MboI GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
MboII GAAGA 7 cut(s) 8, 269, 666, 674, 785, 950, 1047
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 2 cut(s) 295, 1042
MhlI GDGCHC 3 cut(s) 855, 984, 1088
MluCI AATT 6 cut(s) 204, 289, 436, 541, 553, 743
MlyI GAGTC 1 cut(s) 763
MmeI TCCRAC 1 cut(s) 994
MnlI CCTC 9 cut(s) 28, 540, 588, 729, 735, 910, 961, 970, 1065
MseI TTAA 7 cut(s) 68, 183, 500, 582, 674, 881, 960
MspCI CTTAAG 1 cut(s) 499
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 204
MvaI CCWGG 1 cut(s) 97
MvnI CGCG 1 cut(s) 712
NcoI CCATGG 1 cut(s) 220
NdeII GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
NlaIII CATG 2 cut(s) 26, 224
PciSI GCTCTTC 1 cut(s) 1030
PfeI GAWTC 2 cut(s) 40, 702
PflFI GACNNNGTC 1 cut(s) 711
PleI GAGTC 1 cut(s) 762
PpsI GAGTC 1 cut(s) 762
Psp1406I AACGTT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 1 cut(s) 707
PsuI RGATCY 2 cut(s) 295, 1042
PsyI GACNNNGTC 1 cut(s) 711
RsaI GTAC 1 cut(s) 1095
RsaNI GTAC 1 cut(s) 1094
Rsr2I CGGWCCG 1 cut(s) 707
RsrII CGGWCCG 1 cut(s) 707
SapI GCTCTTC 1 cut(s) 1030
SaqAI TTAA 7 cut(s) 68, 183, 500, 582, 674, 881, 960
Sau3AI GATC 7 cut(s) 13, 80, 250, 295, 656, 822, 1042
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 1 cut(s) 763
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 3 cut(s) 855, 984, 1088
SfaNI GCATC 2 cut(s) 164, 369
SinI GGWCC 1 cut(s) 707
SmlI CTYRAG 1 cut(s) 499
SmoI CTYRAG 1 cut(s) 499
Sse9I AATT 6 cut(s) 204, 289, 436, 541, 553, 743
SsiI CCGC 6 cut(s) 153, 710, 785, 799, 805, 1040
SspI AATATT 2 cut(s) 303, 315
SspMI CTAG 4 cut(s) 48, 284, 570, 693
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 338, 994
TaiI ACGT 2 cut(s) 105, 415
TaqI TCGA 3 cut(s) 510, 738, 825
TasI AATT 6 cut(s) 204, 289, 436, 541, 553, 743
TfiI GAWTC 2 cut(s) 40, 702
Tru1I TTAA 7 cut(s) 68, 183, 500, 582, 674, 881, 960
Tru9I TTAA 7 cut(s) 68, 183, 500, 582, 674, 881, 960
TscAI CASTG 3 cut(s) 335, 370, 997
TspDTI ATGAA 4 cut(s) 724, 756, 873, 951
TspGWI ACGGA 4 cut(s) 45, 369, 574, 1037
TspRI CASTG 3 cut(s) 335, 370, 997
Tth111I GACNNNGTC 1 cut(s) 711
Vha464I CTTAAG 1 cut(s) 499
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 2 cut(s) 289, 743
XspI CTAG 4 cut(s) 48, 284, 570, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.