AT3G19470

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
6749432 .. 6751083
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19470.2

Sequence Viewer

Length: 1149 bp
ATGTACAATCTTCCAAGAGATTTGCCGGAGGAGGTGCTCTGTAGAATTCCGTTGACATCTCTGAGGCCTGTCCGATCTACTTGCAAAAAGTGGAGCACTTTATCCAAATGTGGGAGCTTTGCAAAGAAGCACCTTGCTCAAGCAAAAGTACTAGCAGACGCAAAGGAGTTTATGGTGGTCTTGATGATGAATTTTAGGGTTTATTTGATGAGAGTCAATCTTCAAAACAACGTTGTTGAATCATCATCATCATCATCATCATCATCATCATCATGTATAAAACGTGAAGCTAAACTTATTAGCTTAGGCGATGAAGAAGCTGATATATCTCAAGTCTTTCACTGTGACGGTTTATTGTTATGCATCAGCATCACCGAATCCAAGACTAGGCTCGTTGTTTGGAACCCGTATTGGGGGCATACCCGGTTATTCGAGCCCACACATCAATTCAACAAATTCGATAGCTATTCGTATGCTCTCGGATACGACAAGAGCCGCAAATCCCACAAAATCTTGAGGGGTATTACTTGTTTGGATCCCTTCAAAATCTACGATTTTAACTCTGACTTATGGAGGGATCTTGATGTAACTCCGGAGTGGCACTTATGGCAAATGCTCCATGGCGTGTCTCTCAAGGGAAATGCCTACTGGTTTGCTAGAGAGAATTATACCGAAACAATGGACACAGACCATTTTTTCTTACTCTGTTTTGATTTCACAAGCGAGACATTTGGGCCGCCTTTGCCTCTTCCGTTTGAGTTTGCTGTTTCTGAAGATACTATGAGTGTATCTAGTGTTAGAGAAGAGCAGCTTGTTGTATTATATCAGCCGTGGGATTATTTACAGTTGGACATCTGGGTGACGTCTAAGATTGAGCCCAACGCTGTGTCGTGGAACAGCAAGGTGTTCTTATCAGTGAGTTTAAAACAACTCGTCAGCCCTCAGTTTCAGTTAACTTTTGGGAGTTTCTTCATCGACGAGGAGAAGAAAGTCGCTGTGGTTTTTGATAAAGACTACGATAATAAGCGCAACATAGCTTACATCTTTGGAGTGGATGGATCCTTTAAAGCAGTTGATCTCGGAGATTCAGACCGAAAGTGTTTTCCACTTGTGTGCTCTTATGTTCCAAGTCTAGTGCAACTTAATTAG

Protein Analysis

382

Amino Acids

44.04

Weight (kDa)

5.95

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 58 - 381 3.2e-104 F-box associated beta propeller domain
FBA_3 PF08268 81 - 244 1e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 866
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 2 cut(s) 496, 737
AclI AACGTT 1 cut(s) 231
AclWI GGATC 5 cut(s) 530, 543, 585, 1053, 1066
AcsI RAATTY 3 cut(s) 45, 190, 455
AcuI CTGAAG 1 cut(s) 792
AcyI GRCGYC 1 cut(s) 863
AfaI GTAC 2 cut(s) 5, 150
AfiI CCNNNNNNNGG 4 cut(s) 111, 387, 412, 413
AgsI TTSAA 4 cut(s) 224, 239, 451, 544
AleI CACNNNNGTG 1 cut(s) 1111
AluBI AGCT 7 cut(s) 117, 290, 303, 320, 465, 811, 1037
AluI AGCT 7 cut(s) 117, 290, 303, 320, 465, 811, 1037
Alw21I GWGCWC 3 cut(s) 39, 98, 1118
Alw26I GTCTC 2 cut(s) 633, 719
AlwI GGATC 5 cut(s) 530, 543, 585, 1053, 1066
Aor13HI TCCGGA 1 cut(s) 592
AoxI GGCC 2 cut(s) 65, 734
ApeKI GCWGC 1 cut(s) 808
ApoI RAATTY 3 cut(s) 45, 190, 455
AspLEI GCGC 1 cut(s) 1029
AspS9I GGNCC 1 cut(s) 734
AsuC2I CCSGG 1 cut(s) 424
AsuHPI GGTGA 2 cut(s) 364, 871
BamHI GGATCC 2 cut(s) 535, 1058
BanII GRGCYC 2 cut(s) 438, 879
Bbv12I GWGCWC 3 cut(s) 39, 98, 1118
BbvI GCAGC 1 cut(s) 820
BccI CCATC 1 cut(s) 1049
BceAI ACGGC 1 cut(s) 814
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciVI GTATCC 1 cut(s) 476
BcnI CCSGG 1 cut(s) 424
BcoDI GTCTC 2 cut(s) 633, 719
BfaI CTAG 5 cut(s) 152, 387, 657, 792, 1133
BfmI CTRYAG 1 cut(s) 40
BfuI GTATCC 1 cut(s) 476
BisI GCNGC 3 cut(s) 496, 737, 809
BlsI GCNGC 3 cut(s) 497, 738, 810
BmcAI AGTACT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 424
BmgT120I GGNCC 1 cut(s) 734
BmiI GGNNCC 3 cut(s) 404, 537, 1060
BmrFI CCNGG 1 cut(s) 424
BmsI GCATC 2 cut(s) 372, 378
Bpu10I CCTNAGC 1 cut(s) 304
BpuEI CTTGAG 4 cut(s) 123, 315, 535, 617
BpuMI CCSGG 1 cut(s) 424
BsaHI GRCGYC 1 cut(s) 863
BsaJI CCNNGG 2 cut(s) 619, 830
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 387, 412, 413
Bse1I ACTGG 1 cut(s) 653
BseAI TCCGGA 1 cut(s) 592
BseDI CCNNGG 2 cut(s) 619, 830
BseGI GGATG 1 cut(s) 1060
BseLI CCNNNNNNNGG 4 cut(s) 111, 387, 412, 413
BseMII CTCAG 2 cut(s) 53, 956
BseNI ACTGG 1 cut(s) 653
BseRI GAGGAG 2 cut(s) 44, 995
BseXI GCAGC 1 cut(s) 820
BshFI GGCC 2 cut(s) 67, 736
BsiHKAI GWGCWC 3 cut(s) 39, 98, 1118
BsiSI CCGG 3 cut(s) 26, 424, 593
BslI CCNNNNNNNGG 4 cut(s) 111, 387, 412, 413
BsmAI GTCTC 2 cut(s) 633, 719
BsnI GGCC 2 cut(s) 67, 736
Bsp1286I GDGCHC 5 cut(s) 39, 98, 438, 879, 1118
Bsp13I TCCGGA 1 cut(s) 592
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 5 cut(s) 74, 535, 577, 1058, 1075
Bsp19I CCATGG 1 cut(s) 619
BspACI CCGC 2 cut(s) 496, 737
BspANI GGCC 2 cut(s) 67, 736
BspCNI CTCAG 2 cut(s) 54, 955
BspEI TCCGGA 1 cut(s) 592
BspLI GGNNCC 3 cut(s) 404, 537, 1060
BspPI GGATC 5 cut(s) 530, 543, 585, 1053, 1066
BspQI GCTCTTC 1 cut(s) 798
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 653
BssECI CCNNGG 2 cut(s) 619, 830
BssMI GATC 5 cut(s) 74, 535, 577, 1058, 1075
BssNI GRCGYC 1 cut(s) 863
BssT1I CCWWGG 1 cut(s) 619
Bst4CI ACNGT 3 cut(s) 344, 350, 846
Bst6I CTCTTC 2 cut(s) 753, 798
BstACI GRCGYC 1 cut(s) 863
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 4 cut(s) 62, 304, 867, 942
BstDSI CCRYGG 2 cut(s) 619, 830
BstF5I GGATG 1 cut(s) 1060
BstHHI GCGC 1 cut(s) 1029
BstKTI GATC 5 cut(s) 77, 538, 580, 1061, 1078
BstMAI GTCTC 2 cut(s) 633, 719
BstMBI GATC 5 cut(s) 74, 535, 577, 1058, 1075
BstMWI GCNNNNNNNGC 2 cut(s) 607, 742
BstSCI CCNGG 1 cut(s) 422
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 820
BstX2I RGATCY 3 cut(s) 535, 577, 1058
BstYI RGATCY 3 cut(s) 535, 577, 1058
BsuI GTATCC 1 cut(s) 476
BsuRI GGCC 2 cut(s) 67, 736
BtgI CCRYGG 2 cut(s) 619, 830
BtgZI GCGATG 1 cut(s) 324
BtsCI GGATG 1 cut(s) 1060
BtsIMutI CAGTG 2 cut(s) 340, 921
CfoI GCGC 1 cut(s) 1029
Cfr13I GGNCC 1 cut(s) 734
CseI GACGC 1 cut(s) 167
Csp6I GTAC 2 cut(s) 4, 149
CviAII CATG 2 cut(s) 273, 620
CviQI GTAC 2 cut(s) 4, 149
DdeI CTNAG 4 cut(s) 62, 304, 867, 942
DpnI GATC 5 cut(s) 76, 537, 579, 1060, 1077
DpnII GATC 5 cut(s) 74, 535, 577, 1058, 1075
DraI TTTAAA 2 cut(s) 924, 1066
Eam1104I CTCTTC 2 cut(s) 753, 798
EarI CTCTTC 2 cut(s) 753, 798
Eco130I CCWWGG 1 cut(s) 619
Eco147I AGGCCT 1 cut(s) 67
Eco24I GRGCYC 2 cut(s) 438, 879
Eco57I CTGAAG 1 cut(s) 792
EcoRI GAATTC 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 619
EcoT22I ATGCAT 1 cut(s) 365
EcoT38I GRGCYC 2 cut(s) 438, 879
ErhI CCWWGG 1 cut(s) 619
FaeI CATG 2 cut(s) 276, 623
FalI AAGNNNNNCTT 6 cut(s) 279, 311, 795, 827, 893, 925
FatI CATG 2 cut(s) 272, 619
Fnu4HI GCNGC 3 cut(s) 496, 737, 809
FokI GGATG 1 cut(s) 1067
FriOI GRGCYC 2 cut(s) 438, 879
Fsp4HI GCNGC 3 cut(s) 496, 737, 809
FspBI CTAG 5 cut(s) 152, 387, 657, 792, 1133
GlaI GCGC 1 cut(s) 1028
GluI GCNGC 3 cut(s) 496, 737, 809
HaeIII GGCC 2 cut(s) 67, 736
HapII CCGG 3 cut(s) 26, 424, 593
HgaI GACGC 1 cut(s) 167
HhaI GCGC 1 cut(s) 1029
Hin1I GRCGYC 1 cut(s) 863
Hin1II CATG 2 cut(s) 276, 623
Hin6I GCGC 1 cut(s) 1027
HinP1I GCGC 1 cut(s) 1027
HincII GTYRAC 2 cut(s) 54, 954
HindII GTYRAC 2 cut(s) 54, 954
HinfI GANTC 4 cut(s) 213, 239, 377, 1085
HpaI GTTAAC 1 cut(s) 954
HpaII CCGG 3 cut(s) 26, 424, 593
HphI GGTGA 2 cut(s) 364, 871
Hpy166II GTNNAC 2 cut(s) 54, 954
Hpy188I TCNGA 7 cut(s) 63, 74, 482, 565, 772, 1082, 1090
Hpy188III TCNNGA 4 cut(s) 181, 514, 581, 593
Hpy8I GTNNAC 2 cut(s) 54, 954
Hpy99I CGWCG 1 cut(s) 980
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 3 cut(s) 344, 350, 846
HpyCH4IV ACGT 3 cut(s) 231, 283, 863
HpyCH4V TGCA 4 cut(s) 84, 122, 363, 1138
HpyF10VI GCNNNNNNNGC 2 cut(s) 607, 742
HpyF3I CTNAG 4 cut(s) 62, 304, 867, 942
HpySE526I ACGT 3 cut(s) 231, 283, 863
Hsp92I GRCGYC 1 cut(s) 863
Hsp92II CATG 2 cut(s) 276, 623
HspAI GCGC 1 cut(s) 1027
Kpn2I TCCGGA 1 cut(s) 592
KspAI GTTAAC 1 cut(s) 954
Kzo9I GATC 5 cut(s) 74, 535, 577, 1058, 1075
LguI GCTCTTC 1 cut(s) 798
LmnI GCTCC 3 cut(s) 93, 114, 621
LpnPI CCDG 6 cut(s) 39, 81, 437, 606, 634, 841
Lsp1109I GCAGC 1 cut(s) 820
LweI GCATC 2 cut(s) 372, 378
MaeI CTAG 5 cut(s) 152, 387, 657, 792, 1133
MaeII ACGT 3 cut(s) 231, 283, 863
MaeIII GTNAC 3 cut(s) 344, 586, 859
MalI GATC 5 cut(s) 76, 537, 579, 1060, 1077
MboI GATC 5 cut(s) 74, 535, 577, 1058, 1075
MboII GAAGA 7 cut(s) 212, 326, 740, 785, 815, 961, 997
MflI RGATCY 3 cut(s) 535, 577, 1058
MhlI GDGCHC 5 cut(s) 39, 98, 438, 879, 1118
MluCI AATT 6 cut(s) 45, 190, 446, 455, 664, 1144
MlyI GAGTC 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 828
MnlI CCTC 8 cut(s) 22, 25, 57, 510, 567, 756, 951, 973
Mph1103I ATGCAT 1 cut(s) 365
MroI TCCGGA 1 cut(s) 592
MseI TTAA 5 cut(s) 558, 923, 953, 1065, 1143
MslI CAYNNNNRTG 3 cut(s) 271, 857, 1111
MspI CCGG 3 cut(s) 26, 424, 593
MspR9I CCNGG 1 cut(s) 424
MwoI GCNNNNNNNGC 2 cut(s) 607, 742
NciI CCSGG 1 cut(s) 424
NcoI CCATGG 1 cut(s) 619
NdeII GATC 5 cut(s) 74, 535, 577, 1058, 1075
NlaIII CATG 2 cut(s) 276, 623
NlaIV GGNNCC 3 cut(s) 404, 537, 1060
NmuCI GTSAC 2 cut(s) 344, 859
NsiI ATGCAT 1 cut(s) 365
OliI CACNNNNGTG 1 cut(s) 1111
PceI AGGCCT 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 798
PfeI GAWTC 3 cut(s) 239, 377, 1085
PkrI GCNGC 3 cut(s) 497, 738, 810
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
Psp1406I AACGTT 1 cut(s) 231
PspN4I GGNNCC 3 cut(s) 404, 537, 1060
PspPI GGNCC 1 cut(s) 734
PsuI RGATCY 3 cut(s) 535, 577, 1058
RsaI GTAC 2 cut(s) 5, 150
RsaNI GTAC 2 cut(s) 4, 149
RseI CAYNNNNRTG 3 cut(s) 271, 857, 1111
SapI GCTCTTC 1 cut(s) 798
SaqAI TTAA 5 cut(s) 558, 923, 953, 1065, 1143
SatI GCNGC 3 cut(s) 496, 737, 809
Sau3AI GATC 5 cut(s) 74, 535, 577, 1058, 1075
Sau96I GGNCC 1 cut(s) 734
ScaI AGTACT 1 cut(s) 150
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 424
SduI GDGCHC 5 cut(s) 39, 98, 438, 879, 1118
SfaNI GCATC 2 cut(s) 372, 378
SfcI CTRYAG 1 cut(s) 40
SmiMI CAYNNNNRTG 3 cut(s) 271, 857, 1111
SmlI CTYRAG 4 cut(s) 138, 330, 514, 632
SmoI CTYRAG 4 cut(s) 138, 330, 514, 632
Sse9I AATT 6 cut(s) 45, 190, 446, 455, 664, 1144
SseBI AGGCCT 1 cut(s) 67
SsiI CCGC 2 cut(s) 496, 737
SspMI CTAG 5 cut(s) 152, 387, 657, 792, 1133
StuI AGGCCT 1 cut(s) 67
StyD4I CCNGG 1 cut(s) 422
StyI CCWWGG 1 cut(s) 619
TaaI ACNGT 3 cut(s) 344, 350, 846
TaiI ACGT 3 cut(s) 234, 286, 866
TaqI TCGA 3 cut(s) 432, 459, 975
TaqII GACCGA 1 cut(s) 1107
TasI AATT 6 cut(s) 45, 190, 446, 455, 664, 1144
TatI WGTACW 2 cut(s) 3, 148
TauI GCSGC 2 cut(s) 498, 739
TfiI GAWTC 3 cut(s) 239, 377, 1085
Tru1I TTAA 5 cut(s) 558, 923, 953, 1065, 1143
Tru9I TTAA 5 cut(s) 558, 923, 953, 1065, 1143
TscAI CASTG 2 cut(s) 347, 921
TseFI GTSAC 2 cut(s) 344, 859
TseI GCWGC 1 cut(s) 808
Tsp45I GTSAC 2 cut(s) 344, 859
TspDTI ATGAA 3 cut(s) 203, 327, 961
TspGWI ACGGA 2 cut(s) 39, 741
TspRI CASTG 2 cut(s) 347, 921
XapI RAATTY 3 cut(s) 45, 190, 455
XspI CTAG 5 cut(s) 152, 387, 657, 792, 1133
ZraI GACGTC 1 cut(s) 864
ZrmI AGTACT 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.