AT5G60560

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Forward (+)
24345949 .. 24347172
1224 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G60560.1

Sequence Viewer

Length: 1125 bp
ATGACGATGATGAGCGATCTTTCGGAGGATTTGGTAGAGGAGATATTGTGTAGGGTTTCGATAACTTCTCTAGGAGCAGTGAGATCCACGTGCAAAGGATGGTATGTTTTATCCAAAACTAGGGTTCTATGTAAAGCAGAAACAAAGCATCAGTTTCTAGGGTTCATGAAGAAGAATTATAAGCTTTGCTCAATGAGGTTTGATCTCCATGGAAACTTCAACGAAGAAGGAGGTGAAGAATTCATGAATCCATCAATAAAGAAGTCAGGTAATTTACTTGATCAACTTGATATATGTAAAGTTTTTCAATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACTAGGCTCGTGGTATGGAACCCTTATTCGGGTCAAATCAGGTGGATCAAATGCAATAACTCTTACCACAGATACGAAGGTTATGCTATCGGATACAACAATAACCGTAAACACAAAATCTTGAGGTTTTCGGATATGTCATTTTCTACTTACAAAATCTACGATTTTATCTCTAATTCATGGAGGGTTCTTGATATTGCTCCCAACTGGCATATAAACCCTGATCAACGTGGCGCGTCTTTGAAAGGGAACACTTACTTTTTTGCTAGGGAAAAAAGAGAGGATGAAGAGGATGAAGATATTCTTTGGCAGCCGGTAGAGTATTTACTCTGTTTTGATTTTACAACGGAGAACTTTGGTCAGCTTCATCCTTTACCGTTTGAGCAATATATTGACGACGCTGGAGCTCTCTCTTCTTTTGGAGAGGAGAAACTCGCGGCGTTATTTCAGAGCTTCGCTAGTTCAGTTGTGGAGATTTGGGTTACAAGTATGATTGAGGCCAATGCAGTGTCGTGGATCCCTTTCTTAAAAGTTGATATGAAACCACACTGTAGTTTTCGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCGTGGTTATTCATGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACGTAGCTTACATCATTGGAGAGAATGGCTCTTATGTTCCAAGTTTAGCACAGATCAACCAAAGTGTAGAATTCGAAAATGAAAGAGAAGAAGAGGAAGCGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

374

Amino Acids

43.33

Weight (kDa)

4.97

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 41 2e-06 F-box domain
FBA_1 PF07734 54 - 352 9.1e-97 F-box associated beta propeller domain
FBA_3 PF08268 103 - 284 1.5e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 180
AccII CGCG 2 cut(s) 584, 785
AciI CCGC 2 cut(s) 785, 1009
AclWI GGATC 4 cut(s) 78, 401, 859, 872
AcsI RAATTY 2 cut(s) 239, 1088
AcvI CACGTG 1 cut(s) 90
AfiI CCNNNNNNNGG 5 cut(s) 120, 376, 377, 926, 1015
AgsI TTSAA 3 cut(s) 220, 308, 592
AluBI AGCT 5 cut(s) 184, 712, 755, 801, 1025
AluI AGCT 5 cut(s) 184, 712, 755, 801, 1025
Alw21I GWGCWC 1 cut(s) 757
AlwI GGATC 4 cut(s) 78, 401, 859, 872
AoxI GGCC 1 cut(s) 846
ApeKI GCWGC 1 cut(s) 658
ApoI RAATTY 2 cut(s) 239, 1088
Asp700I GAANNNNTTC 1 cut(s) 648
AspLEI GCGC 1 cut(s) 584
AsuHPI GGTGA 1 cut(s) 245
AsuII TTCGAA 1 cut(s) 1092
BaeI ACNNNNGTAYC 2 cut(s) 412, 445
BamHI GGATCC 1 cut(s) 864
BanII GRGCYC 1 cut(s) 757
BauI CACGAG 1 cut(s) 356
BbrPI CACGTG 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 757
BbvI GCAGC 1 cut(s) 670
BccI CCATC 2 cut(s) 93, 259
BceAI ACGGC 1 cut(s) 950
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciVI GTATCC 1 cut(s) 434
BclI TGATCA 2 cut(s) 280, 571
BfaI CTAG 6 cut(s) 71, 120, 158, 351, 615, 807
BfmI CTRYAG 1 cut(s) 898
BfuI GTATCC 1 cut(s) 434
BisI GCNGC 2 cut(s) 659, 786
BlsI GCNGC 2 cut(s) 660, 787
BmiI GGNNCC 2 cut(s) 368, 866
BmsI GCATC 1 cut(s) 157
BplI GAGNNNNNCTC 2 cut(s) 1031, 1063
BpmI CTGGAG 1 cut(s) 771
Bpu14I TTCGAA 1 cut(s) 1092
BpuEI CTTGAG 1 cut(s) 490
BsaAI YACGTR 1 cut(s) 90
BsaJI CCNNGG 2 cut(s) 208, 966
BsaXI ACNNNNNCTCC 2 cut(s) 32, 62
Bsc4I CCNNNNNNNGG 5 cut(s) 120, 376, 377, 926, 1015
Bse118I RCCGGY 1 cut(s) 661
Bse1I ACTGG 1 cut(s) 560
BseDI CCNNGG 2 cut(s) 208, 966
BseGI GGATG 4 cut(s) 104, 637, 646, 715
BseLI CCNNNNNNNGG 5 cut(s) 120, 376, 377, 926, 1015
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 3 cut(s) 53, 788, 965
BseXI GCAGC 1 cut(s) 670
Bsh1236I CGCG 2 cut(s) 584, 785
BshFI GGCC 1 cut(s) 848
BsiHKAI GWGCWC 1 cut(s) 757
BsiSI CCGG 1 cut(s) 662
BslI CCNNNNNNNGG 5 cut(s) 120, 376, 377, 926, 1015
BsnI GGCC 1 cut(s) 848
Bsp119I TTCGAA 1 cut(s) 1092
Bsp1286I GDGCHC 1 cut(s) 757
Bsp143I GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 2 cut(s) 785, 1009
BspANI GGCC 1 cut(s) 848
BspFNI CGCG 2 cut(s) 584, 785
BspHI TCATGA 2 cut(s) 165, 243
BspLI GGNNCC 2 cut(s) 368, 866
BspPI GGATC 4 cut(s) 78, 401, 859, 872
BspT104I TTCGAA 1 cut(s) 1092
BsrFI RCCGGY 1 cut(s) 661
BsrI ACTGG 1 cut(s) 560
BssAI RCCGGY 1 cut(s) 661
BssECI CCNNGG 2 cut(s) 208, 966
BssMI GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
BssSI CACGAG 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 208
Bst2BI CACGAG 1 cut(s) 356
Bst4CI ACNGT 4 cut(s) 455, 726, 899, 929
Bst6I CTCTTC 3 cut(s) 630, 766, 1104
BstBAI YACGTR 1 cut(s) 90
BstBI TTCGAA 1 cut(s) 1092
BstDSI CCRYGG 2 cut(s) 208, 966
BstF5I GGATG 4 cut(s) 104, 637, 646, 715
BstFNI CGCG 2 cut(s) 584, 785
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 8 cut(s) 19, 86, 205, 283, 396, 574, 867, 1074
BstMBI GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
BstSFI CTRYAG 1 cut(s) 898
BstUI CGCG 2 cut(s) 584, 785
BstV1I GCAGC 1 cut(s) 670
BstX2I RGATCY 2 cut(s) 83, 864
BstYI RGATCY 2 cut(s) 83, 864
BsuI GTATCC 1 cut(s) 434
BsuRI GGCC 1 cut(s) 848
BtgI CCRYGG 2 cut(s) 208, 966
BtsCI GGATG 4 cut(s) 104, 637, 646, 715
BtsI GCAGTG 2 cut(s) 84, 861
BtsIMutI CAGTG 3 cut(s) 84, 861, 895
CciI TCATGA 2 cut(s) 165, 243
CfoI GCGC 1 cut(s) 584
Cfr10I RCCGGY 1 cut(s) 661
CseI GACGC 2 cut(s) 573, 755
CspCI CAANNNNNGTGG 2 cut(s) 371, 406
CviAII CATG 5 cut(s) 166, 209, 244, 528, 977
CviJI RGCY 9 cut(s) 184, 355, 661, 712, 755, 801, 848, 1025, 1047
CviKI_1 RGCY 9 cut(s) 184, 355, 661, 712, 755, 801, 848, 1025, 1047
DpnI GATC 8 cut(s) 18, 85, 204, 282, 395, 573, 866, 1073
DpnII GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
Eam1104I CTCTTC 3 cut(s) 630, 766, 1104
EarI CTCTTC 3 cut(s) 630, 766, 1104
Ecl136II GAGCTC 1 cut(s) 755
Eco130I CCWWGG 1 cut(s) 208
Eco24I GRGCYC 1 cut(s) 757
Eco53kI GAGCTC 1 cut(s) 755
Eco72I CACGTG 1 cut(s) 90
EcoICRI GAGCTC 1 cut(s) 755
EcoRI GAATTC 2 cut(s) 239, 1088
EcoT14I CCWWGG 1 cut(s) 208
EcoT38I GRGCYC 1 cut(s) 757
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 5 cut(s) 169, 212, 247, 531, 980
FalI AAGNNNNNCTT 2 cut(s) 636, 668
FatI CATG 5 cut(s) 165, 208, 243, 527, 976
FbaI TGATCA 2 cut(s) 280, 571
Fnu4HI GCNGC 2 cut(s) 659, 786
FokI GGATG 4 cut(s) 111, 644, 653, 702
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 2 cut(s) 659, 786
FspBI CTAG 6 cut(s) 71, 120, 158, 351, 615, 807
GlaI GCGC 1 cut(s) 583
GluI GCNGC 2 cut(s) 659, 786
GsuI CTGGAG 1 cut(s) 771
HaeIII GGCC 1 cut(s) 848
HapII CCGG 1 cut(s) 662
HgaI GACGC 2 cut(s) 573, 755
HhaI GCGC 1 cut(s) 584
Hin1II CATG 5 cut(s) 169, 212, 247, 531, 980
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 247, 995
HpaII CCGG 1 cut(s) 662
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 5 cut(s) 25, 440, 481, 798, 1000
Hpy188III TCNNGA 4 cut(s) 166, 244, 469, 539
Hpy8I GTNNAC 1 cut(s) 458
Hpy99I CGWCG 2 cut(s) 317, 749
HpyAV CCTTC 2 cut(s) 221, 419
HpyCH4III ACNGT 4 cut(s) 455, 726, 899, 929
HpyCH4IV ACGT 3 cut(s) 89, 577, 1020
HpyCH4V TGCA 3 cut(s) 93, 402, 854
HpySE526I ACGT 3 cut(s) 89, 577, 1020
Hsp92II CATG 5 cut(s) 169, 212, 247, 531, 980
HspAI GCGC 1 cut(s) 582
Ksp22I TGATCA 2 cut(s) 280, 571
Kzo9I GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
LmnI GCTCC 3 cut(s) 74, 553, 752
LpnPI CCDG 6 cut(s) 252, 373, 541, 582, 675, 735
Lsp1109I GCAGC 1 cut(s) 670
LweI GCATC 1 cut(s) 157
MaeI CTAG 6 cut(s) 71, 120, 158, 351, 615, 807
MaeII ACGT 3 cut(s) 89, 577, 1020
MaeIII GTNAC 2 cut(s) 331, 829
MalI GATC 8 cut(s) 18, 85, 204, 282, 395, 573, 866, 1073
MboI GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
MflI RGATCY 2 cut(s) 83, 864
MhlI GDGCHC 1 cut(s) 757
MluCI AATT 5 cut(s) 175, 239, 271, 523, 1088
MroXI GAANNNNTTC 1 cut(s) 648
MseI TTAA 1 cut(s) 875
MslI CAYNNNNRTG 1 cut(s) 981
MspI CCGG 1 cut(s) 662
MvnI CGCG 2 cut(s) 584, 785
NcoI CCATGG 1 cut(s) 208
NdeII GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
NlaIII CATG 5 cut(s) 169, 212, 247, 531, 980
NlaIV GGNNCC 2 cut(s) 368, 866
NmuCI GTSAC 1 cut(s) 331
NspV TTCGAA 1 cut(s) 1092
PagI TCATGA 2 cut(s) 165, 243
PdmI GAANNNNTTC 1 cut(s) 648
PfeI GAWTC 2 cut(s) 247, 995
PkrI GCNGC 2 cut(s) 660, 787
PmaCI CACGTG 1 cut(s) 90
PmlI CACGTG 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 90
PsiI TTATAA 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 757
PspCI CACGTG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 368, 866
PsuI RGATCY 2 cut(s) 83, 864
RseI CAYNNNNRTG 1 cut(s) 981
SacI GAGCTC 1 cut(s) 757
SaqAI TTAA 1 cut(s) 875
SatI GCNGC 2 cut(s) 659, 786
Sau3AI GATC 8 cut(s) 16, 83, 202, 280, 393, 571, 864, 1071
SduI GDGCHC 1 cut(s) 757
SfaNI GCATC 1 cut(s) 157
SfcI CTRYAG 1 cut(s) 898
SfuI TTCGAA 1 cut(s) 1092
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 1 cut(s) 469
SmoI CTYRAG 1 cut(s) 469
Sse9I AATT 5 cut(s) 175, 239, 271, 523, 1088
SsiI CCGC 2 cut(s) 785, 1009
SspMI CTAG 6 cut(s) 71, 120, 158, 351, 615, 807
SstI GAGCTC 1 cut(s) 757
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 4 cut(s) 455, 726, 899, 929
TaiI ACGT 3 cut(s) 92, 580, 1023
TaqI TCGA 2 cut(s) 59, 1092
TasI AATT 5 cut(s) 175, 239, 271, 523, 1088
TauI GCSGC 1 cut(s) 788
TfiI GAWTC 2 cut(s) 247, 995
Tru1I TTAA 1 cut(s) 875
Tru9I TTAA 1 cut(s) 875
TscAI CASTG 3 cut(s) 84, 861, 902
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 1 cut(s) 658
Tsp45I GTSAC 1 cut(s) 331
TspGWI ACGGA 1 cut(s) 710
TspRI CASTG 3 cut(s) 84, 861, 902
XapI RAATTY 2 cut(s) 239, 1088
XmnI GAANNNNTTC 1 cut(s) 648
XspI CTAG 6 cut(s) 71, 120, 158, 351, 615, 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.