AT1G50470
ERF Family

termination of mitochondrial transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Reverse (-)
18700000 .. 18700444
445 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G50470.1

Sequence Viewer

Length: 366 bp
ATGGAGGAGTTTCTTGATGTCGTCTCTCCCGAAGACGACTTAGTATCCACTGGCAAGTCGTTGAAGGGAAATGAAGTAAATGATATTAAGGCTCTCTCAGTTGTTAGAGAAGAACATCTCTCCTTATTATATCAGAGTGCAAAGAAACTAAAGATGGATATAAGGGTGACCAATGAGATTGAGACAGTGGATTTAAAACCCCATGGTTGTTTGTTTTCGAGTTCCCTAAGTTTCCACATTGACGAAGAGAAGAAAGTTGCTGTTTGCGGTGAGAAAGTCATATACAACAAGATATACATTGTTGGAGAAGATAAATACACAAGGTATATCGATCTTCTGGTTTCGGTAGCTTTGATGGTCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006139 GO:0006355 GO:0006396 GO:0006412 GO:0006417 GO:0006518 GO:0006725 GO:0006807 GO:0006914 GO:0006996 GO:0008150 GO:0008152 GO:0008380 GO:0009056 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0016020 GO:0016043 GO:0016070 GO:0016236 GO:0019219 GO:0019222 GO:0019538 GO:0019843 GO:0019867 GO:0022607 GO:0022613 GO:0022618 GO:0031090 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031966 GO:0031967 GO:0031968 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032270 GO:0032502 GO:0032543 GO:0034248 GO:0034250 GO:0034622 GO:0034641 GO:0034645 GO:0042254 GO:0042255 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051253 GO:0060255 GO:0061668 GO:0061919 GO:0065003 GO:0065007 GO:0070013 GO:0070129 GO:0070131 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:0140053 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903108 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04130 ko04310 map04130 map04310
Pfam Domains
Protein Families
mTERF

Protein Analysis

121

Amino Acids

13.62

Weight (kDa)

5.04

Isoelectric Point (pI)

29.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 27 - 113 7.3e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AgsI TTSAA 1 cut(s) 64
AluBI AGCT 1 cut(s) 350
AluI AGCT 1 cut(s) 350
Alw26I GTCTC 2 cut(s) 28, 176
AsuHPI GGTGA 2 cut(s) 178, 281
BbsI GAAGAC 1 cut(s) 39
BccI CCATC 2 cut(s) 148, 349
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 28, 176
BfuI GTATCC 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 55
BseCI ATCGAT 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 1 cut(s) 20
BshVI ATCGAT 1 cut(s) 330
BsmAI GTCTC 2 cut(s) 28, 176
BsmBI CGTCTC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 331
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 1 cut(s) 267
BspCNI CTCAG 1 cut(s) 110
BspDI ATCGAT 1 cut(s) 330
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 40, 97, 227
BstDSI CCRYGG 1 cut(s) 202
BstEII GGTNACC 1 cut(s) 166
BstKTI GATC 1 cut(s) 334
BstMAI GTCTC 2 cut(s) 28, 176
BstMBI GATC 1 cut(s) 331
BstPI GGTNACC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 330
BsuI GTATCC 1 cut(s) 55
BsuTUI ATCGAT 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 202
BtsIMutI CAGTG 2 cut(s) 48, 192
ClaI ATCGAT 1 cut(s) 330
CviAII CATG 1 cut(s) 203
CviJI RGCY 2 cut(s) 92, 350
CviKI_1 RGCY 2 cut(s) 92, 350
DdeI CTNAG 3 cut(s) 40, 97, 227
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DraI TTTAAA 1 cut(s) 195
Eam1104I CTCTTC 1 cut(s) 240
EarI CTCTTC 1 cut(s) 240
Eco130I CCWWGG 1 cut(s) 202
Eco91I GGTNACC 1 cut(s) 166
EcoO65I GGTNACC 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
Esp3I CGTCTC 1 cut(s) 28
FaeI CATG 1 cut(s) 206
FaiI YATR 7 cut(s) 130, 161, 204, 281, 283, 295, 327
FatI CATG 1 cut(s) 202
Hin1II CATG 1 cut(s) 206
HphI GGTGA 2 cut(s) 178, 281
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 2 cut(s) 14, 29
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 3 cut(s) 40, 97, 227
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 1 cut(s) 331
LpnPI CCDG 2 cut(s) 36, 323
MaeIII GTNAC 1 cut(s) 166
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 6 cut(s) 44, 122, 257, 262, 320, 326
MmeI TCCRAC 1 cut(s) 283
MseI TTAA 3 cut(s) 87, 194, 364
NcoI CCATGG 1 cut(s) 202
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PspEI GGTNACC 1 cut(s) 166
SaqAI TTAA 3 cut(s) 87, 194, 364
Sau3AI GATC 1 cut(s) 331
SetI ASST 2 cut(s) 326, 352
SgeI CNNG 9 cut(s) 26, 41, 63, 67, 215, 231, 301, 333, 350
SsiI CCGC 1 cut(s) 267
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 187
TaqI TCGA 2 cut(s) 218, 330
Tru1I TTAA 3 cut(s) 87, 194, 364
Tru9I TTAA 3 cut(s) 87, 194, 364
TscAI CASTG 2 cut(s) 55, 192
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 87
TspRI CASTG 2 cut(s) 55, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.