AT3G21410

F-box LRR-repeat kelch-repeat protein At1g11620

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
7536719 .. 7537951
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G21410.1

Sequence Viewer

Length: 1233 bp
ATGGCGTGGTTCCAACATGTTAAATTATATATAGCTTCATGCATAAATCTATTCACAAAGATCCAGAAGCCATACCTCTCCATGGCCATGGATTCCAAAGAATGTTCATTGTTGCCTTTTGAGTTATTTGAAGAAATACTTTGTAGGGTTCCAACTAAATCTCTTTTACGACTCAAGTTGACGTGCAAACGATGGCTCGCTCTTTTCAACGACAAGAGATTCATTTACAAGCACTTAGCTCTTGTTCGGGAACATATCATAAGGACCAATCAAATGGTTAAGATCATCAACCCGGTAGTTGGAGCTTGCTCATCTTTTTCACTTCCTAACAAGTTTCAAGTGAAAGGTGAGATTTATACTATGGTTCCCTGCGACGGGTTATTGTTATGCATTTTCGAAACAGGTTCAATGGCAGTTTGGAACCCATGTTTGAACCAGGTTAGATGGATCTTTCTCCTGAATCCTTCTTTCCGGGGTTGTAGTTGCTACGGCATTGGATATGACGGTTTATCTCGGGATAGCTACAAAATCTTGAGGTTCGTAAACGGTGTTTTTACCAAAAACGAGTATGCAAATACGGGCTCTTACAAACCAGAGGTTGATATTTATGAATTAAAGTCTAATTCTTGGAAAACTTTTAAAGTTTCTTTGGATTGGCATGTGGTTTTGCGTTGTAAAGGTTTGTCACTCAAAGGAAACATGTATTGGATTGCTAAATGGAACCGTAAACCCGACATCTTCATCCAAAGCTTTAACTTCTCTACAGAGACATTTGAGCCCTTGTGCTCTCTTCCCGTTAGGTATGATGTACATAATGTTGTAGCTTTATCAGCTTTCAAAGGAGACAATCTTTCTTTGTTACACCAAAGCAAAGAAACATCAAAGATCGATGTATGGGTTACTAACAAGGTTAAGAACGGAGTGAGTATCTTATGGACCAAGTTATTTAGTGTGACAAGACCTGATCTCCCGGTATTGCTGGCTTTTGAGAATCTTTCTTATCCGGTGCATTTCATTGATAAGAATAATAGGATCGTAGTATGTTGTGAGGAAGTATTGGCAGATAAAAGAAACGTAGCCGTCAACATCTACGTTATTGGAGAGGATGAGATCAAAAGCCAAGATGAGATAGAACAACACCAACTAGGTTTTAGTTGGCCTTTTATCTCCGGCTATACATATCTTCCAAGTCTTGTTCCGGTTCCATCATCGGAGGATAATACACCAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

410

Amino Acids

47.28

Weight (kDa)

8.71

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 36 - 74 4.6e-09 F-box domain
F-box-like PF12937 37 - 80 1.3e-06 F-box-like
FBA_1 PF07734 89 - 401 1.2e-79 F-box associated beta propeller domain
FBA_3 PF08268 118 - 316 6.4e-15 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 55, 455, 1040
AcoI YGGCCR 1 cut(s) 84
AfaI GTAC 1 cut(s) 810
AfiI CCNNNNNNNGG 4 cut(s) 82, 299, 374, 375
AflIII ACRYGT 2 cut(s) 16, 699
AgsI TTSAA 6 cut(s) 131, 208, 338, 408, 433, 838
AjiI CACGTC 1 cut(s) 183
AjnI CCWGG 1 cut(s) 435
AjuI GAANNNNNNNTTGG 2 cut(s) 688, 720
AluBI AGCT 7 cut(s) 35, 239, 305, 522, 750, 824, 833
AluI AGCT 7 cut(s) 35, 239, 305, 522, 750, 824, 833
Alw21I GWGCWC 1 cut(s) 788
Alw26I GTCTC 2 cut(s) 761, 837
AlwI GGATC 3 cut(s) 55, 455, 1040
Ama87I CYCGRG 1 cut(s) 513
AoxI GGCC 2 cut(s) 84, 1157
AspS9I GGNCC 2 cut(s) 264, 936
AsuC2I CCSGG 3 cut(s) 293, 473, 971
AsuHPI GGTGA 1 cut(s) 359
AsuII TTCGAA 1 cut(s) 396
AvaI CYCGRG 1 cut(s) 513
AvaII GGWCC 2 cut(s) 264, 936
BalI TGGCCA 1 cut(s) 86
BanII GRGCYC 2 cut(s) 584, 780
Bbv12I GWGCWC 1 cut(s) 788
BccI CCATC 3 cut(s) 186, 438, 1213
BceAI ACGGC 2 cut(s) 505, 1064
BciT130I CCWGG 1 cut(s) 437
BcnI CCSGG 3 cut(s) 293, 473, 971
BcoDI GTCTC 2 cut(s) 761, 837
BfaI CTAG 1 cut(s) 1145
BfmI CTRYAG 1 cut(s) 762
Bme1390I CCNGG 4 cut(s) 293, 437, 473, 971
Bme18I GGWCC 2 cut(s) 264, 936
BmeT110I CYCGRG 1 cut(s) 513
BmgBI CACGTC 1 cut(s) 183
BmgT120I GGNCC 2 cut(s) 264, 936
BmiI GGNNCC 6 cut(s) 11, 150, 366, 422, 722, 1203
BmrFI CCNGG 4 cut(s) 293, 437, 473, 971
Bpu14I TTCGAA 1 cut(s) 396
BpuEI CTTGAG 2 cut(s) 158, 553
BpuMI CCSGG 3 cut(s) 293, 473, 971
Bsa29I ATCGAT 1 cut(s) 888
BsaJI CCNNGG 3 cut(s) 81, 87, 472
BsaWI WCCGGW 2 cut(s) 1003, 1198
BsaXI ACNNNNNCTCC 2 cut(s) 951, 981
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 299, 374, 375
BseBI CCWGG 1 cut(s) 437
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 3 cut(s) 81, 87, 472
BseGI GGATG 2 cut(s) 741, 1111
BseLI CCNNNNNNNGG 4 cut(s) 82, 299, 374, 375
BshFI GGCC 2 cut(s) 86, 1159
BshVI ATCGAT 1 cut(s) 888
BsiHKAI GWGCWC 1 cut(s) 788
BsiHKCI CYCGRG 1 cut(s) 513
BsiSI CCGG 6 cut(s) 293, 472, 971, 1004, 1170, 1199
BslI CCNNNNNNNGG 4 cut(s) 82, 299, 374, 375
BsmAI GTCTC 2 cut(s) 761, 837
BsnI GGCC 2 cut(s) 86, 1159
BsoBI CYCGRG 1 cut(s) 513
Bsp119I TTCGAA 1 cut(s) 396
Bsp1286I GDGCHC 3 cut(s) 584, 780, 788
Bsp1407I TGTACA 1 cut(s) 808
Bsp143I GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
Bsp19I CCATGG 2 cut(s) 81, 87
BspANI GGCC 2 cut(s) 86, 1159
BspDI ATCGAT 1 cut(s) 888
BspLI GGNNCC 6 cut(s) 11, 150, 366, 422, 722, 1203
BspPI GGATC 3 cut(s) 55, 455, 1040
BspT104I TTCGAA 1 cut(s) 396
BsrGI TGTACA 1 cut(s) 808
BssECI CCNNGG 3 cut(s) 81, 87, 472
BssMI GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
BssT1I CCWWGG 2 cut(s) 81, 87
Bst2UI CCWGG 1 cut(s) 437
Bst4CI ACNGT 3 cut(s) 506, 548, 725
Bst6I CTCTTC 1 cut(s) 795
BstAUI TGTACA 1 cut(s) 808
BstBI TTCGAA 1 cut(s) 396
BstC8I GCNNGC 3 cut(s) 198, 307, 981
BstDEI CTNAG 1 cut(s) 235
BstDSI CCRYGG 2 cut(s) 81, 87
BstF5I GGATG 2 cut(s) 741, 1111
BstKTI GATC 7 cut(s) 63, 285, 450, 888, 967, 1035, 1113
BstMAI GTCTC 2 cut(s) 761, 837
BstMBI GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
BstMWI GCNNNNNNNGC 1 cut(s) 830
BstNI CCWGG 1 cut(s) 437
BstNSI RCATGY 3 cut(s) 20, 662, 703
BstSCI CCNGG 4 cut(s) 291, 435, 471, 969
BstSFI CTRYAG 1 cut(s) 762
BstX2I RGATCY 2 cut(s) 60, 447
BstXI CCANNNNNNTGG 2 cut(s) 88, 274
BstYI RGATCY 2 cut(s) 60, 447
Bsu15I ATCGAT 1 cut(s) 888
BsuRI GGCC 2 cut(s) 86, 1159
BsuTUI ATCGAT 1 cut(s) 888
BtgI CCRYGG 2 cut(s) 81, 87
BtrI CACGTC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 741, 1111
Cac8I GCNNGC 3 cut(s) 198, 307, 981
Cfr13I GGNCC 2 cut(s) 264, 936
ClaI ATCGAT 1 cut(s) 888
CsiI ACCWGGT 1 cut(s) 435
Csp6I GTAC 1 cut(s) 809
CviAII CATG 7 cut(s) 17, 39, 82, 88, 426, 659, 700
CviQI GTAC 1 cut(s) 809
DdeI CTNAG 1 cut(s) 235
DpnI GATC 7 cut(s) 62, 284, 449, 887, 966, 1034, 1112
DpnII GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
DraI TTTAAA 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 84
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco130I CCWWGG 2 cut(s) 81, 87
Eco24I GRGCYC 2 cut(s) 584, 780
Eco47I GGWCC 2 cut(s) 264, 936
Eco88I CYCGRG 1 cut(s) 513
EcoRII CCWGG 1 cut(s) 435
EcoT14I CCWWGG 2 cut(s) 81, 87
EcoT22I ATGCAT 2 cut(s) 44, 392
EcoT38I GRGCYC 2 cut(s) 584, 780
ErhI CCWWGG 2 cut(s) 81, 87
FaeI CATG 7 cut(s) 20, 42, 85, 91, 429, 662, 703
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FatI CATG 7 cut(s) 16, 38, 81, 87, 425, 658, 699
FokI GGATG 2 cut(s) 728, 1118
FriOI GRGCYC 2 cut(s) 584, 780
FspBI CTAG 1 cut(s) 1145
HaeIII GGCC 2 cut(s) 86, 1159
HapII CCGG 6 cut(s) 293, 472, 971, 1004, 1170, 1199
Hin1II CATG 7 cut(s) 20, 42, 85, 91, 429, 662, 703
HincII GTYRAC 2 cut(s) 180, 1084
HindII GTYRAC 2 cut(s) 180, 1084
HindIII AAGCTT 1 cut(s) 748
HinfI GANTC 5 cut(s) 92, 171, 219, 460, 991
HpaII CCGG 6 cut(s) 293, 472, 971, 1004, 1170, 1199
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 4 cut(s) 180, 544, 728, 1084
Hpy188I TCNGA 1 cut(s) 1213
Hpy188III TCNNGA 5 cut(s) 64, 248, 457, 515, 532
Hpy8I GTNNAC 4 cut(s) 180, 544, 728, 1084
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 3 cut(s) 506, 548, 725
HpyCH4IV ACGT 3 cut(s) 182, 1074, 1092
HpyCH4V TGCA 5 cut(s) 42, 186, 390, 572, 1009
HpyF10VI GCNNNNNNNGC 1 cut(s) 830
HpyF3I CTNAG 1 cut(s) 235
HpySE526I ACGT 3 cut(s) 182, 1074, 1092
Hsp92II CATG 7 cut(s) 20, 42, 85, 91, 429, 662, 703
Kzo9I GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
LmnI GCTCC 1 cut(s) 302
MabI ACCWGGT 1 cut(s) 435
MaeI CTAG 1 cut(s) 1145
MaeII ACGT 3 cut(s) 182, 1074, 1092
MaeIII GTNAC 4 cut(s) 684, 858, 898, 952
MalI GATC 7 cut(s) 62, 284, 449, 887, 966, 1034, 1112
MboI GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
MboII GAAGA 4 cut(s) 143, 730, 782, 1175
MflI RGATCY 2 cut(s) 60, 447
MhlI GDGCHC 3 cut(s) 584, 780, 788
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 3 cut(s) 23, 611, 622
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 3 cut(s) 37, 176, 280
MnlI CCTC 6 cut(s) 86, 528, 589, 1042, 1096, 1207
Mox20I TGGCCA 1 cut(s) 86
Mph1103I ATGCAT 2 cut(s) 44, 392
MscI TGGCCA 1 cut(s) 86
MseI TTAA 6 cut(s) 21, 279, 614, 639, 753, 912
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 86
MspI CCGG 6 cut(s) 293, 472, 971, 1004, 1170, 1199
MspR9I CCNGG 4 cut(s) 293, 437, 473, 971
MvaI CCWGG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 830
NciI CCSGG 3 cut(s) 293, 473, 971
NcoI CCATGG 2 cut(s) 81, 87
NdeII GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
NlaIII CATG 7 cut(s) 20, 42, 85, 91, 429, 662, 703
NlaIV GGNNCC 6 cut(s) 11, 150, 366, 422, 722, 1203
NmuCI GTSAC 2 cut(s) 684, 952
NsiI ATGCAT 2 cut(s) 44, 392
NspI RCATGY 3 cut(s) 20, 662, 703
NspV TTCGAA 1 cut(s) 396
PciI ACATGT 2 cut(s) 16, 699
PfeI GAWTC 4 cut(s) 92, 219, 460, 991
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PscI ACATGT 2 cut(s) 16, 699
Psp6I CCWGG 1 cut(s) 435
PspGI CCWGG 1 cut(s) 435
PspN4I GGNNCC 6 cut(s) 11, 150, 366, 422, 722, 1203
PspPI GGNCC 2 cut(s) 264, 936
PsuI RGATCY 2 cut(s) 60, 447
RsaI GTAC 1 cut(s) 810
RsaNI GTAC 1 cut(s) 809
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 6 cut(s) 21, 279, 614, 639, 753, 912
Sau3AI GATC 7 cut(s) 60, 282, 447, 885, 964, 1032, 1110
Sau96I GGNCC 2 cut(s) 264, 936
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 4 cut(s) 293, 437, 473, 971
SduI GDGCHC 3 cut(s) 584, 780, 788
SexAI ACCWGGT 1 cut(s) 435
SfcI CTRYAG 1 cut(s) 762
SfuI TTCGAA 1 cut(s) 396
SinI GGWCC 2 cut(s) 264, 936
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 173, 532
SmoI CTYRAG 2 cut(s) 173, 532
Sse9I AATT 3 cut(s) 23, 611, 622
SspMI CTAG 1 cut(s) 1145
StyD4I CCNGG 4 cut(s) 291, 435, 471, 969
StyI CCWWGG 2 cut(s) 81, 87
TaaI ACNGT 3 cut(s) 506, 548, 725
TaiI ACGT 3 cut(s) 185, 1077, 1095
TaqI TCGA 2 cut(s) 396, 888
TasI AATT 3 cut(s) 23, 611, 622
TatI WGTACW 1 cut(s) 808
TfiI GAWTC 4 cut(s) 92, 219, 460, 991
Tru1I TTAA 6 cut(s) 21, 279, 614, 639, 753, 912
Tru9I TTAA 6 cut(s) 21, 279, 614, 639, 753, 912
TseFI GTSAC 2 cut(s) 684, 952
Tsp45I GTSAC 2 cut(s) 684, 952
TspDTI ATGAA 6 cut(s) 27, 96, 211, 624, 730, 1003
TspGWI ACGGA 1 cut(s) 933
VpaK11BI GGWCC 2 cut(s) 264, 936
XceI RCATGY 3 cut(s) 20, 662, 703
XspI CTAG 1 cut(s) 1145
Zsp2I ATGCAT 2 cut(s) 44, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.