AT1G54550

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
20369651 .. 20370986
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54550.1

Sequence Viewer

Length: 1089 bp
ATGGCGACAGTAACCGATCTACCGGATGATTTGGTAAGAGAAATATTTTCTAGGGTTCCATTGACATCTCTAAGAGCAGTGAGATCTACTTGTAAAAAGTGGAACGCTATATCGAAATATGACATCTTAGGTAAAAAAGCAGCAGCAAAGAATCAGTTCTTGGAGTTCATGGTTACAGATTCTAGGGTTTGTTCTTTGAGATTAGATCTTCAAGGAATCCGTAGCGAAGAAGATTTGATTGATCTATCTATAAAGCAAATAAGTATACCTAATAAAGTTGATCAAGTCGAGATATCTCAAGTCTATCACTGTGATGGCTTATTGTTATGCATCGCCAAAGACAACTCGAGTGTTATGGTATGGAATCCGTATTTAGGGCAGACGAAATTGATTCAACCAAGAAAAAAACTCCACAGATATGACAAGTTTGCTCTTGGATACGACAACAACCGTAACCACAAAATTTTGAGGTTTCTTTATGAGGGGAGTCCAAGAAACGTCATTATTGATGTTTACGATTTTAGCTCTGATTCATGGAGGGTTCTTGATATTGATATAGATTGGCATGAACTGTTTAGTCACAATAGCGTGTCTTTGAAGGGAAATACTTACTTTTTTGGTCGAAAGGGACCACGTTTGCCTATGCTGTTTAAACCTCCATCTCGTCGTTTTGAATATTTGACTCTATCTTGTGTTAGAAATGAGAAACTCGCTGTGTTATACAGCCACCTCAACAGATTTGGCACAATAGAGATTTGTATTTCGACTAAGATTGATCCCAGTGCAGTATCATGGACCACTTTTTTGAGAATTGATATGACACTAATCAATGGTTTACCGGATAACTTTTTTGTTCACTCTTATGCTACGAGCTTTTTCTTCGATGAGGAGAAGAAGGTCGCTGTGCTTTTCGGTACAAACAGATATAGAGGACGTGAGACCTGTCAGTACTACCAGAGAGCTTGCATCGTTGGAGATAGTGGATACTTCAAAGCTGTCAACATCGAACTAGTTTTCAATTCACAGCTGCAATCTTGCCAACTTGTGAGCTCTTCTTATGTTCCAAGTTTAGTGCAACTGCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

362

Amino Acids

41.79

Weight (kDa)

8.83

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 5 - 42 1.4e-07 F-box-like
F-box PF00646 6 - 44 6e-10 F-box domain
FBA_1 PF07734 56 - 208 6.5e-52 F-box associated beta propeller domain
FBA_3 PF08268 86 - 230 8.8e-10 F-box associated beta propeller domain
FBA_1 PF07734 210 - 360 5.4e-27 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 265
AclWI GGATC 1 cut(s) 770
AcsI RAATTY 1 cut(s) 462
AfaI GTAC 2 cut(s) 916, 950
AfiI CCNNNNNNNGG 1 cut(s) 374
AgsI TTSAA 6 cut(s) 212, 395, 598, 674, 991, 1018
AhlI ACTAGT 1 cut(s) 1009
AjiI CACGTC 1 cut(s) 935
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 6 cut(s) 525, 873, 962, 995, 1027, 1050
AluI AGCT 6 cut(s) 525, 873, 962, 995, 1027, 1050
Alw21I GWGCWC 1 cut(s) 1052
Alw26I GTCTC 1 cut(s) 932
AlwI GGATC 1 cut(s) 770
Ama87I CYCGRG 1 cut(s) 346
ApeKI GCWGC 3 cut(s) 140, 143, 1027
ApoI RAATTY 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
Asp700I GAANNNNTTC 1 cut(s) 155
AspS9I GGNCC 2 cut(s) 629, 795
AvaI CYCGRG 1 cut(s) 346
AvaII GGWCC 2 cut(s) 629, 795
BanII GRGCYC 1 cut(s) 1052
Bbv12I GWGCWC 1 cut(s) 1052
BbvI GCAGC 3 cut(s) 152, 155, 1014
BccI CCATC 2 cut(s) 308, 667
BciVI GTATCC 2 cut(s) 431, 977
BclI TGATCA 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 932
BcuI ACTAGT 1 cut(s) 1009
BfaI CTAG 3 cut(s) 51, 183, 1010
BfuI GTATCC 2 cut(s) 431, 977
BglII AGATCT 2 cut(s) 83, 205
BisI GCNGC 3 cut(s) 141, 144, 1028
BlsI GCNGC 3 cut(s) 142, 145, 1029
BmcAI AGTACT 1 cut(s) 950
Bme18I GGWCC 2 cut(s) 629, 795
BmeT110I CYCGRG 1 cut(s) 346
BmgBI CACGTC 1 cut(s) 935
BmgT120I GGNCC 2 cut(s) 629, 795
BmiI GGNNCC 2 cut(s) 57, 630
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 2 cut(s) 339, 975
BmuI ACTGGG 1 cut(s) 774
BpuEI CTTGAG 1 cut(s) 282
BsaI GGTCTC 1 cut(s) 932
BsaWI WCCGGW 2 cut(s) 22, 838
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 780
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 374
BseNI ACTGG 1 cut(s) 780
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 3 cut(s) 152, 155, 1014
BsgI GTGCAG 1 cut(s) 804
BsiHKAI GWGCWC 1 cut(s) 1052
BsiHKCI CYCGRG 1 cut(s) 346
BsiSI CCGG 2 cut(s) 23, 839
BslFI GGGAC 1 cut(s) 642
BslI CCNNNNNNNGG 1 cut(s) 374
BsmAI GTCTC 1 cut(s) 932
BsmFI GGGAC 1 cut(s) 642
Bso31I GGTCTC 1 cut(s) 932
BsoBI CYCGRG 1 cut(s) 346
Bsp1286I GDGCHC 1 cut(s) 1052
Bsp143I GATC 6 cut(s) 16, 83, 205, 241, 280, 775
BspLI GGNNCC 2 cut(s) 57, 630
BspPI GGATC 1 cut(s) 770
BspQI GCTCTTC 1 cut(s) 1057
BspTNI GGTCTC 1 cut(s) 932
BsrI ACTGG 1 cut(s) 780
BssMI GATC 6 cut(s) 16, 83, 205, 241, 280, 775
BssNAI GTATAC 1 cut(s) 266
Bst1107I GTATAC 1 cut(s) 266
Bst4CI ACNGT 4 cut(s) 10, 311, 452, 573
Bst6I CTCTTC 1 cut(s) 1057
BstC8I GCNNGC 1 cut(s) 964
BstDEI CTNAG 3 cut(s) 71, 127, 768
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 6 cut(s) 19, 86, 208, 244, 283, 778
BstMAI GTCTC 1 cut(s) 932
BstMBI GATC 6 cut(s) 16, 83, 205, 241, 280, 775
BstV1I GCAGC 3 cut(s) 152, 155, 1014
BstX2I RGATCY 2 cut(s) 83, 205
BstYI RGATCY 2 cut(s) 83, 205
BstZ17I GTATAC 1 cut(s) 266
BsuI GTATCC 2 cut(s) 431, 977
BtgZI GCGATG 1 cut(s) 316
BtrI CACGTC 1 cut(s) 935
BtsCI GGATG 1 cut(s) 31
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 3 cut(s) 84, 307, 787
Cac8I GCNNGC 1 cut(s) 964
Cfr13I GGNCC 2 cut(s) 629, 795
Csp6I GTAC 2 cut(s) 915, 949
CviAII CATG 4 cut(s) 169, 534, 566, 792
CviJI RGCY 8 cut(s) 318, 525, 726, 873, 962, 995, 1027, 1050
CviKI_1 RGCY 8 cut(s) 318, 525, 726, 873, 962, 995, 1027, 1050
CviQI GTAC 2 cut(s) 915, 949
DdeI CTNAG 3 cut(s) 71, 127, 768
DpnI GATC 6 cut(s) 18, 85, 207, 243, 282, 777
DpnII GATC 6 cut(s) 16, 83, 205, 241, 280, 775
DraI TTTAAA 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 1057
EarI CTCTTC 1 cut(s) 1057
Ecl136II GAGCTC 1 cut(s) 1050
Eco24I GRGCYC 1 cut(s) 1052
Eco31I GGTCTC 1 cut(s) 932
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 2 cut(s) 629, 795
Eco53kI GAGCTC 1 cut(s) 1050
Eco88I CYCGRG 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 1050
EcoRV GATATC 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 1052
FaeI CATG 4 cut(s) 172, 537, 569, 795
FaqI GGGAC 1 cut(s) 642
FatI CATG 4 cut(s) 168, 533, 565, 791
FbaI TGATCA 1 cut(s) 280
FblI GTMKAC 1 cut(s) 265
Fnu4HI GCNGC 3 cut(s) 141, 144, 1028
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 1052
Fsp4HI GCNGC 3 cut(s) 141, 144, 1028
FspBI CTAG 3 cut(s) 51, 183, 1010
GluI GCNGC 3 cut(s) 141, 144, 1028
HapII CCGG 2 cut(s) 23, 839
Hin1II CATG 4 cut(s) 172, 537, 569, 795
HincII GTYRAC 1 cut(s) 1000
HindII GTYRAC 1 cut(s) 1000
HinfI GANTC 8 cut(s) 151, 179, 216, 364, 391, 487, 530, 682
HpaII CCGG 2 cut(s) 23, 839
Hpy166II GTNNAC 5 cut(s) 266, 514, 836, 856, 1000
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 2 cut(s) 289, 545
Hpy8I GTNNAC 5 cut(s) 266, 514, 836, 856, 1000
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 2 cut(s) 592, 889
HpyCH4III ACNGT 4 cut(s) 10, 311, 452, 573
HpyCH4IV ACGT 3 cut(s) 498, 634, 934
HpyCH4V TGCA 6 cut(s) 330, 785, 966, 1030, 1075, 1081
HpyF3I CTNAG 3 cut(s) 71, 127, 768
HpySE526I ACGT 3 cut(s) 498, 634, 934
Hsp92II CATG 4 cut(s) 172, 537, 569, 795
Ksp22I TGATCA 1 cut(s) 280
Kzo9I GATC 6 cut(s) 16, 83, 205, 241, 280, 775
LguI GCTCTTC 1 cut(s) 1057
LpnPI CCDG 5 cut(s) 36, 793, 852, 955, 968
Lsp1109I GCAGC 3 cut(s) 152, 155, 1014
LweI GCATC 2 cut(s) 339, 975
MaeI CTAG 3 cut(s) 51, 183, 1010
MaeII ACGT 3 cut(s) 498, 634, 934
MaeIII GTNAC 4 cut(s) 10, 172, 452, 578
MalI GATC 6 cut(s) 18, 85, 207, 243, 282, 777
MboI GATC 6 cut(s) 16, 83, 205, 241, 280, 775
MboII GAAGA 6 cut(s) 200, 239, 242, 871, 904, 1044
MflI RGATCY 2 cut(s) 83, 205
MhlI GDGCHC 1 cut(s) 1052
MluCI AATT 4 cut(s) 386, 462, 810, 1018
MlyI GAGTC 2 cut(s) 496, 676
MmeI TCCRAC 1 cut(s) 952
MnlI CCTC 7 cut(s) 462, 475, 531, 666, 740, 880, 923
Mph1103I ATGCAT 1 cut(s) 332
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 3 cut(s) 312, 417, 861
MspA1I CMGCKG 1 cut(s) 1027
MspI CCGG 2 cut(s) 23, 839
MssI GTTTAAAC 1 cut(s) 652
NdeII GATC 6 cut(s) 16, 83, 205, 241, 280, 775
NlaIII CATG 4 cut(s) 172, 537, 569, 795
NlaIV GGNNCC 2 cut(s) 57, 630
NmuCI GTSAC 1 cut(s) 578
NsiI ATGCAT 1 cut(s) 332
PaeR7I CTCGAG 1 cut(s) 346
PciSI GCTCTTC 1 cut(s) 1057
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 6 cut(s) 151, 179, 216, 364, 391, 530
PkrI GCNGC 3 cut(s) 142, 145, 1029
PleI GAGTC 2 cut(s) 495, 676
PmeI GTTTAAAC 1 cut(s) 652
PpsI GAGTC 2 cut(s) 495, 676
Psp124BI GAGCTC 1 cut(s) 1052
PspN4I GGNNCC 2 cut(s) 57, 630
PspPI GGNCC 2 cut(s) 629, 795
PspXI VCTCGAGB 1 cut(s) 346
PsuI RGATCY 2 cut(s) 83, 205
PvuII CAGCTG 1 cut(s) 1027
RsaI GTAC 2 cut(s) 916, 950
RsaNI GTAC 2 cut(s) 915, 949
RseI CAYNNNNRTG 3 cut(s) 312, 417, 861
SacI GAGCTC 1 cut(s) 1052
SapI GCTCTTC 1 cut(s) 1057
SaqAI TTAA 1 cut(s) 651
SatI GCNGC 3 cut(s) 141, 144, 1028
Sau3AI GATC 6 cut(s) 16, 83, 205, 241, 280, 775
Sau96I GGNCC 2 cut(s) 629, 795
ScaI AGTACT 1 cut(s) 950
SchI GAGTC 2 cut(s) 496, 676
SduI GDGCHC 1 cut(s) 1052
SfaNI GCATC 2 cut(s) 339, 975
Sfr274I CTCGAG 1 cut(s) 346
SinI GGWCC 2 cut(s) 629, 795
SlaI CTCGAG 1 cut(s) 346
SmiMI CAYNNNNRTG 3 cut(s) 312, 417, 861
SmlI CTYRAG 2 cut(s) 297, 346
SmoI CTYRAG 2 cut(s) 297, 346
SpeI ACTAGT 1 cut(s) 1009
Sse9I AATT 4 cut(s) 386, 462, 810, 1018
SspI AATATT 2 cut(s) 45, 677
SspMI CTAG 3 cut(s) 51, 183, 1010
SstI GAGCTC 1 cut(s) 1052
TaaI ACNGT 4 cut(s) 10, 311, 452, 573
TaiI ACGT 3 cut(s) 501, 637, 937
TaqI TCGA 7 cut(s) 113, 288, 347, 622, 764, 882, 1005
TasI AATT 4 cut(s) 386, 462, 810, 1018
TatI WGTACW 1 cut(s) 948
TfiI GAWTC 6 cut(s) 151, 179, 216, 364, 391, 530
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 3 cut(s) 84, 314, 787
TseFI GTSAC 1 cut(s) 578
TseI GCWGC 3 cut(s) 140, 143, 1027
Tsp45I GTSAC 1 cut(s) 578
TspDTI ATGAA 3 cut(s) 157, 522, 582
TspGWI ACGGA 2 cut(s) 209, 357
TspRI CASTG 3 cut(s) 84, 314, 787
VpaK11BI GGWCC 2 cut(s) 629, 795
XapI RAATTY 1 cut(s) 462
XhoI CTCGAG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 155
XspI CTAG 3 cut(s) 51, 183, 1010
ZrmI AGTACT 1 cut(s) 950
Zsp2I ATGCAT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.