AT1G77655

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Reverse (-)
29182608 .. 29183172
565 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77655.1

Sequence Viewer

Length: 291 bp
ATGAATCCGGTGACCTTAGATCTCTTATGTCTACCAGTTTCCCAAGAGTTTGGTTTTGGTATTTTGCATACTACCGTTTCTGTTATTCACTGCTCCAAAGTTCCGATTTCTCCAAGGAGACATTCAAGCCCATATGTTCGTGGCCTGTTGAGGATAGGGTTGATTATGCCTGGTGTGTTCCTCTTGATTTATCCGCCTTTTCAGGTTTCCAAGAAGATAGGCTTTCTTTGTTATATCAATACGCTGGAGCCAAAACAAGAGATAACCAGGTGTGAGTCACAAACAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.84

Weight (kDa)

9.34

Isoelectric Point (pI)

62.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 31
AciI CCGC 1 cut(s) 194
AgsI TTSAA 1 cut(s) 126
AjnI CCWGG 2 cut(s) 169, 266
AjuI GAANNNNNNNTTGG 2 cut(s) 106, 138
Alw26I GTCTC 1 cut(s) 112
AoxI GGCC 1 cut(s) 142
AsuHPI GGTGA 1 cut(s) 22
BciT130I CCWGG 2 cut(s) 171, 268
BcoDI GTCTC 1 cut(s) 112
BglII AGATCT 1 cut(s) 19
Bme1390I CCNGG 2 cut(s) 171, 268
BmiI GGNNCC 1 cut(s) 249
BmrFI CCNGG 2 cut(s) 171, 268
BpmI CTGGAG 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 35
BseBI CCWGG 2 cut(s) 171, 268
BseDI CCNNGG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 35
BshFI GGCC 1 cut(s) 144
BsiSI CCGG 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 112
BsnI GGCC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 19
BspACI CCGC 1 cut(s) 194
BspANI GGCC 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 249
BsrI ACTGG 1 cut(s) 35
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 1 cut(s) 19
BssT1I CCWWGG 1 cut(s) 113
Bst2UI CCWGG 2 cut(s) 171, 268
Bst4CI ACNGT 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 16
BstEII GGTNACC 1 cut(s) 10
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 112
BstMBI GATC 1 cut(s) 19
BstNI CCWGG 2 cut(s) 171, 268
BstPI GGTNACC 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 169, 266
BstX2I RGATCY 1 cut(s) 19
BstXI CCANNNNNNTGG 1 cut(s) 50
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 88
CsiI ACCWGGT 1 cut(s) 266
CviJI RGCY 4 cut(s) 129, 144, 222, 250
CviKI_1 RGCY 4 cut(s) 129, 144, 222, 250
DdeI CTNAG 1 cut(s) 16
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
EciI GGCGGA 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 113
Eco91I GGTNACC 1 cut(s) 10
EcoO65I GGTNACC 1 cut(s) 10
EcoRII CCWGG 2 cut(s) 169, 266
EcoT14I CCWWGG 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 113
FaiI YATR 6 cut(s) 28, 69, 133, 135, 167, 234
FalI AAGNNNNNCTT 2 cut(s) 206, 238
FauNDI CATATG 1 cut(s) 133
FblI GTMKAC 1 cut(s) 31
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 144
HapII CCGG 1 cut(s) 8
HinfI GANTC 2 cut(s) 4, 275
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 22
Hpy166II GTNNAC 1 cut(s) 32
Hpy188I TCNGA 1 cut(s) 105
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 67
HpyF3I CTNAG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 2 cut(s) 98, 247
LpnPI CCDG 9 cut(s) 21, 48, 156, 158, 183, 188, 230, 253, 280
MabI ACCWGGT 1 cut(s) 266
MaeIII GTNAC 2 cut(s) 10, 276
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 1 cut(s) 226
MflI RGATCY 1 cut(s) 19
MlyI GAGTC 1 cut(s) 284
MnlI CCTC 2 cut(s) 144, 191
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 171, 268
MvaI CCWGG 2 cut(s) 171, 268
NdeI CATATG 1 cut(s) 133
NdeII GATC 1 cut(s) 19
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 2 cut(s) 10, 276
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 169, 266
PspEI GGTNACC 1 cut(s) 10
PspGI CCWGG 2 cut(s) 169, 266
PspN4I GGNNCC 1 cut(s) 249
PsuI RGATCY 1 cut(s) 19
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 1 cut(s) 284
ScrFI CCNGG 2 cut(s) 171, 268
SetI ASST 4 cut(s) 17, 207, 272, 290
SexAI ACCWGGT 1 cut(s) 266
SsiI CCGC 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 169, 266
StyI CCWWGG 1 cut(s) 113
TaaI ACNGT 1 cut(s) 76
TfiI GAWTC 1 cut(s) 4
TscAI CASTG 1 cut(s) 95
TseFI GTSAC 2 cut(s) 10, 276
Tsp45I GTSAC 2 cut(s) 10, 276
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.