AT5G51000

F-box LRR-repeat kelch-repeat protein At1g11620

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Reverse (-)
20742533 .. 20743669
1137 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G51000.1

Sequence Viewer

Length: 1137 bp
ATGTCGACGATGTCTGATCTTTTCCCGGATTTGGTAGAAGAGATACTCTCTAGGGTTCCAATAACATCTTTGAAAGCAGTGAAATTAACTTGTAAACAATGGAATGATTTATCCAAAGATTCGAGCTTTACAAAAAACCATTATGGTAAAGAAGCCAAGGAGATTCAGGTGATCATGATATGTGATTTAAAGGCTTGTTTAATGAGCGTCAATCTCCATAATCACAAAGACTTGGCAGATCCATCTATAAAGCAAATAGGTAAACTTAATCAAGTCGAAATAGATAGTGTGTTTCATTGTGATGGCTTATTATTATTGTTGTTATGCAACCCTAAGGATAACTCGAAGCTCATGGTTTGGAACCCTTACTTGGGTCAAACCAGGTGGATCCAACCTAGAAACAACTCGCATAAGCATAGACCAGCTGGCAGGTTTAATCATAGACCAGCTGGCAGATTTTATATGGGATACGACAGCAACAACAACCACAAAATCTTATGGTTTTCGTCTATGTACCGTGAGTATGAAATCTACGATTTTAAGTCTGATGCGTGGACGGTTATTGATGTCAATACCGACCAAGACCATATAATAGATAATCAGCGTGTGTCCTTGAAGGGTAATGTTTACTTTATTGCTCATGACATATTGAAAGAGGAAGCATTTTTACTTTCTTTTGATTTTACATGTGAAAGATTTGGACCGAGTCTTCCTCTTCCATTTCACTGTTGTCATGAGGATACTGTACTTCTATCTACTGTTAGAGAAGAGCAGCTTGCAGTGTTATTTCAGAAGTCTGATGCGTATGAGATGGGAATATGGATTACAACTAAGATTGAGCTCAATATAGTGTTGTGGAGCAAGTTCTTAAAAGTTGATATGACATTGCCTAACAGCTATTGGTTTGAAGATTTGAGTTTCTTCCTCGTCGACGAGAAGAAGAAAGTAGCAATGGTTAGTGAATTAGACATAGAAACGTGTAAGAACTACAAAACTTACATTCTCGGAGAGAATGGATACTACAGAGAAGTGGATCTTAGAAAATCCAAAGGTTGTGTCTACTTATGTGTTCTTATGTTCCAAGTTTGGTGCAAATCCAGTAAGGTTCCAGTACTTGCAAGATGCGAAAGAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

378

Amino Acids

44.15

Weight (kDa)

6.85

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 45 8.6e-08 F-box domain
FBA_1 PF07734 56 - 358 2.2e-93 F-box associated beta propeller domain
FBA_3 PF08268 107 - 277 1.2e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 420
AccI GTMKAC 3 cut(s) 5, 930, 1059
AclWI GGATC 4 cut(s) 233, 382, 395, 1041
AfaI GTAC 3 cut(s) 515, 747, 1113
AfiI CCNNNNNNNGG 3 cut(s) 31, 370, 371
AflIII ACRYGT 2 cut(s) 686, 977
AgsI TTSAA 4 cut(s) 73, 616, 652, 908
AjnI CCWGG 1 cut(s) 380
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AluBI AGCT 7 cut(s) 126, 349, 425, 449, 775, 841, 897
AluI AGCT 7 cut(s) 126, 349, 425, 449, 775, 841, 897
Alw21I GWGCWC 1 cut(s) 843
AlwI GGATC 4 cut(s) 233, 382, 395, 1041
ApeKI GCWGC 1 cut(s) 772
ArsI GACNNNNNNTTYG 2 cut(s) 1041, 1073
AspS9I GGNCC 1 cut(s) 701
AsuC2I CCSGG 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 181
AvaII GGWCC 1 cut(s) 701
AxyI CCTNAGG 1 cut(s) 333
BamHI GGATCC 1 cut(s) 387
BanII GRGCYC 1 cut(s) 843
BarI GAAGNNNNNNTAC 2 cut(s) 651, 683
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 843
BbvI GCAGC 1 cut(s) 784
BccI CCATC 3 cut(s) 250, 296, 805
BciT130I CCWGG 1 cut(s) 382
BciVI GTATCC 3 cut(s) 461, 733, 1010
BclI TGATCA 1 cut(s) 171
BcnI CCSGG 1 cut(s) 26
BfaI CTAG 2 cut(s) 51, 396
BfmI CTRYAG 1 cut(s) 1021
BfuAI ACCTGC 1 cut(s) 420
BfuI GTATCC 3 cut(s) 461, 733, 1010
BisI GCNGC 1 cut(s) 773
BlsI GCNGC 1 cut(s) 774
BmcAI AGTACT 1 cut(s) 1113
Bme1390I CCNGG 2 cut(s) 26, 382
Bme18I GGWCC 1 cut(s) 701
BmgT120I GGNCC 1 cut(s) 701
BmiI GGNNCC 4 cut(s) 57, 362, 389, 1107
BmrFI CCNGG 2 cut(s) 26, 382
BmsI GCATC 3 cut(s) 538, 790, 1112
BpiI GAAGAC 1 cut(s) 701
BplI GAGNNNNNCTC 4 cut(s) 32, 64, 697, 729
BpuMI CCSGG 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 370, 371
Bse1I ACTGG 2 cut(s) 1098, 1109
Bse21I CCTNAGG 1 cut(s) 333
Bse3DI GCAATG 2 cut(s) 884, 957
BseBI CCWGG 1 cut(s) 382
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 3 cut(s) 31, 370, 371
BseMI GCAATG 2 cut(s) 884, 957
BseNI ACTGG 2 cut(s) 1098, 1109
BseXI GCAGC 1 cut(s) 784
BsiHKAI GWGCWC 1 cut(s) 843
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 3 cut(s) 31, 370, 371
Bsp1286I GDGCHC 1 cut(s) 843
Bsp143I GATC 5 cut(s) 16, 171, 238, 387, 1033
BspHI TCATGA 3 cut(s) 174, 640, 733
BspLI GGNNCC 4 cut(s) 57, 362, 389, 1107
BspMI ACCTGC 1 cut(s) 420
BspPI GGATC 4 cut(s) 233, 382, 395, 1041
BspQI GCTCTTC 1 cut(s) 762
BsrDI GCAATG 2 cut(s) 884, 957
BsrI ACTGG 2 cut(s) 1098, 1109
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 5 cut(s) 16, 171, 238, 387, 1033
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 382
Bst4CI ACNGT 5 cut(s) 518, 559, 728, 745, 760
Bst6I CTCTTC 3 cut(s) 33, 720, 762
BstC8I GCNNGC 3 cut(s) 427, 451, 777
BstDEI CTNAG 3 cut(s) 333, 831, 1037
BstKTI GATC 5 cut(s) 19, 174, 241, 390, 1036
BstMBI GATC 5 cut(s) 16, 171, 238, 387, 1033
BstNI CCWGG 1 cut(s) 382
BstNSI RCATGY 1 cut(s) 690
BstSCI CCNGG 2 cut(s) 24, 380
BstSFI CTRYAG 1 cut(s) 1021
BstV1I GCAGC 1 cut(s) 784
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 3 cut(s) 238, 387, 1033
BstYI RGATCY 3 cut(s) 238, 387, 1033
Bsu36I CCTNAGG 1 cut(s) 333
BsuI GTATCC 3 cut(s) 461, 733, 1010
BtsI GCAGTG 2 cut(s) 84, 786
BtsIMutI CAGTG 3 cut(s) 84, 724, 786
BveI ACCTGC 1 cut(s) 420
Cac8I GCNNGC 3 cut(s) 427, 451, 777
CciI TCATGA 3 cut(s) 174, 640, 733
Cfr13I GGNCC 1 cut(s) 701
CseI GACGC 1 cut(s) 196
CsiI ACCWGGT 1 cut(s) 380
Csp6I GTAC 3 cut(s) 514, 746, 1112
CspCI CAANNNNNGTGG 2 cut(s) 365, 400
CviAII CATG 5 cut(s) 175, 352, 641, 687, 734
CviQI GTAC 3 cut(s) 514, 746, 1112
DdeI CTNAG 3 cut(s) 333, 831, 1037
DpnI GATC 5 cut(s) 18, 173, 240, 389, 1035
DpnII GATC 5 cut(s) 16, 171, 238, 387, 1033
DraI TTTAAA 1 cut(s) 189
Eam1104I CTCTTC 3 cut(s) 33, 720, 762
EarI CTCTTC 3 cut(s) 33, 720, 762
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 701
Eco53kI GAGCTC 1 cut(s) 841
Eco81I CCTNAGG 1 cut(s) 333
EcoICRI GAGCTC 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 5 cut(s) 178, 355, 644, 690, 737
FalI AAGNNNNNCTT 4 cut(s) 759, 791, 1020, 1052
FatI CATG 5 cut(s) 174, 351, 640, 686, 733
FbaI TGATCA 1 cut(s) 171
FblI GTMKAC 3 cut(s) 5, 930, 1059
Fnu4HI GCNGC 1 cut(s) 773
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 1 cut(s) 773
FspBI CTAG 2 cut(s) 51, 396
GluI GCNGC 1 cut(s) 773
HapII CCGG 1 cut(s) 26
HgaI GACGC 1 cut(s) 196
Hin1II CATG 5 cut(s) 178, 355, 644, 690, 737
HincII GTYRAC 2 cut(s) 6, 931
HindII GTYRAC 2 cut(s) 6, 931
HinfI GANTC 3 cut(s) 119, 163, 706
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 7 cut(s) 6, 95, 263, 555, 628, 931, 1060
Hpy188I TCNGA 5 cut(s) 16, 547, 792, 799, 1007
Hpy188III TCNNGA 3 cut(s) 175, 641, 734
Hpy8I GTNNAC 7 cut(s) 6, 95, 263, 555, 628, 931, 1060
Hpy99I CGWCG 3 cut(s) 10, 932, 935
HpyAV CCTTC 1 cut(s) 610
HpyCH4III ACNGT 5 cut(s) 518, 559, 728, 745, 760
HpyCH4IV ACGT 1 cut(s) 977
HpyCH4V TGCA 4 cut(s) 327, 779, 1092, 1118
HpyF3I CTNAG 3 cut(s) 333, 831, 1037
HpySE526I ACGT 1 cut(s) 977
Hsp92II CATG 5 cut(s) 178, 355, 644, 690, 737
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 5 cut(s) 16, 171, 238, 387, 1033
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 1 cut(s) 858
Lsp1109I GCAGC 1 cut(s) 784
LweI GCATC 3 cut(s) 538, 790, 1112
MabI ACCWGGT 1 cut(s) 380
MaeI CTAG 2 cut(s) 51, 396
MaeII ACGT 1 cut(s) 977
MalI GATC 5 cut(s) 18, 173, 240, 389, 1035
MboI GATC 5 cut(s) 16, 171, 238, 387, 1033
MboII GAAGA 8 cut(s) 50, 701, 707, 779, 913, 920, 949, 952
MflI RGATCY 3 cut(s) 238, 387, 1033
MhlI GDGCHC 1 cut(s) 843
MluCI AATT 2 cut(s) 83, 962
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 4 cut(s) 649, 723, 730, 935
MseI TTAA 7 cut(s) 86, 188, 200, 267, 435, 540, 869
MslI CAYNNNNRTG 1 cut(s) 300
MspA1I CMGCKG 2 cut(s) 425, 449
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 2 cut(s) 26, 382
MvaI CCWGG 1 cut(s) 382
NciI CCSGG 1 cut(s) 26
NdeII GATC 5 cut(s) 16, 171, 238, 387, 1033
NlaIII CATG 5 cut(s) 178, 355, 644, 690, 737
NlaIV GGNNCC 4 cut(s) 57, 362, 389, 1107
NspI RCATGY 1 cut(s) 690
PagI TCATGA 3 cut(s) 174, 640, 733
PciI ACATGT 1 cut(s) 686
PciSI GCTCTTC 1 cut(s) 762
PfeI GAWTC 2 cut(s) 119, 163
PflFI GACNNNGTC 2 cut(s) 10, 705
PfoI TCCNGGA 1 cut(s) 24
PkrI GCNGC 1 cut(s) 774
PleI GAGTC 1 cut(s) 714
PpsI GAGTC 1 cut(s) 714
PscI ACATGT 1 cut(s) 686
Psp124BI GAGCTC 1 cut(s) 843
Psp6I CCWGG 1 cut(s) 380
PspGI CCWGG 1 cut(s) 380
PspN4I GGNNCC 4 cut(s) 57, 362, 389, 1107
PspPI GGNCC 1 cut(s) 701
PsuI RGATCY 3 cut(s) 238, 387, 1033
PsyI GACNNNGTC 2 cut(s) 10, 705
PvuII CAGCTG 2 cut(s) 425, 449
RsaI GTAC 3 cut(s) 515, 747, 1113
RsaNI GTAC 3 cut(s) 514, 746, 1112
RseI CAYNNNNRTG 1 cut(s) 300
SacI GAGCTC 1 cut(s) 843
SalI GTCGAC 2 cut(s) 4, 929
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 7 cut(s) 86, 188, 200, 267, 435, 540, 869
SatI GCNGC 1 cut(s) 773
Sau3AI GATC 5 cut(s) 16, 171, 238, 387, 1033
Sau96I GGNCC 1 cut(s) 701
ScaI AGTACT 1 cut(s) 1113
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 2 cut(s) 26, 382
SduI GDGCHC 1 cut(s) 843
SexAI ACCWGGT 1 cut(s) 380
SfaNI GCATC 3 cut(s) 538, 790, 1112
SfcI CTRYAG 1 cut(s) 1021
SgrDI CGTCGACG 1 cut(s) 929
SinI GGWCC 1 cut(s) 701
SmiMI CAYNNNNRTG 1 cut(s) 300
Sse9I AATT 2 cut(s) 83, 962
SspMI CTAG 2 cut(s) 51, 396
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 2 cut(s) 24, 380
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 5 cut(s) 518, 559, 728, 745, 760
TaiI ACGT 1 cut(s) 980
TaqI TCGA 5 cut(s) 5, 122, 276, 344, 930
TaqII GACCGA 1 cut(s) 718
TasI AATT 2 cut(s) 83, 962
TatI WGTACW 2 cut(s) 745, 1111
TfiI GAWTC 2 cut(s) 119, 163
Tru1I TTAA 7 cut(s) 86, 188, 200, 267, 435, 540, 869
Tru9I TTAA 7 cut(s) 86, 188, 200, 267, 435, 540, 869
TscAI CASTG 3 cut(s) 84, 731, 786
TseI GCWGC 1 cut(s) 772
TspDTI ATGAA 2 cut(s) 284, 540
TspRI CASTG 3 cut(s) 84, 731, 786
Tth111I GACNNNGTC 2 cut(s) 10, 705
VpaK11BI GGWCC 1 cut(s) 701
XceI RCATGY 1 cut(s) 690
XmiI GTMKAC 3 cut(s) 5, 930, 1059
XspI CTAG 2 cut(s) 51, 396
ZrmI AGTACT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.