AT3G25090

peroxiredoxin activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
9140039 .. 9141094
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G25090.2

Sequence Viewer

Length: 978 bp
ATGCAAATAGGTCAAGCCTTAGCCGCAGCAAAGGAAGGTGAGTCTCAGATGATCGTGATGATGGGTAACAATCTTTCTTTAACAAGCATTATTCTCAATGGAGATCCATCTATAGAGCATAAAGGAAAACTTACTTGCCTTGACGAACAAGTCAAGATATCTCAGTTCTATCACTGCGAGGGCTTACTGCTATGCATTTTAAAAGATGATTCTAGGTTTGTGGTTTGTAATCCGTATTTGGAGCAAACAAGGTGGATCGAACCAAGATATTCCCATCGTCCATACGGAATGGATAGGTTCTCTTACGCTCTTGGATACGTGAATACGGATTCTTGTCGTAGCTACAAGTTGTTGAGGTTTATAGATTATTACTACAATGCACCCGAGAAGCAATTCTTTTGGTATGAAGTCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTCACTCCACATTGGCGTATAGCGTTTTGTAACACTGGCGTTCCTTTTAAGGGAAACACTTACTGGTGTGCTGCAGAAAGGAACGTAGATGTAGATGAAGTCTTAGCTAATCGCTTAATCTGTTTTGATTTTACAAAAGAGAAGCTTGCGGTTTTACTTCAGCACGATGAATCAAATCCATATGAGCTTGACTTGTGGATTACAACTAAGATTGAGACAGAAGAGGTGTTGTGGAGCAAGTTCTTGAGAGTGGAAACAGCTGGTTTTAATAGTTATGTTCCTTTTATAAGTGGAAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCCTTTGGTTTTGATGAACGTAACCGCCAGAGAGTTATTGTCATTGGAGAGGCTGGATACTTGAGGGGATTGGATCTCGTTGGGGATTTTGGAGACCAAAGCTGTAAGCCAGATCTATGCTCTTATGTTCCAAGTTTAGTGCAAATCAAGCAACCTGAAGGAGGGGAAAGGGAAGAAGAAAGCGAATATGGAGAAGCTTCGATATGA

Protein Analysis

325

Amino Acids

37.58

Weight (kDa)

4.71

Isoelectric Point (pI)

40.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 16 - 219 2.6e-69 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 734
AasI GACNNNNNNGTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 411
AciI CCGC 3 cut(s) 24, 596, 796
AclWI GGATC 3 cut(s) 98, 263, 852
AcuI CTGAAG 2 cut(s) 590, 948
AfiI CCNNNNNNNGG 2 cut(s) 497, 932
AluBI AGCT 7 cut(s) 342, 554, 592, 634, 707, 873, 968
AluI AGCT 7 cut(s) 342, 554, 592, 634, 707, 873, 968
Alw26I GTCTC 3 cut(s) 48, 656, 858
AlwI GGATC 3 cut(s) 98, 263, 852
Ama87I CYCGRG 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 26, 518
Asp700I GAANNNNTTC 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 50
AvaI CYCGRG 1 cut(s) 383
BbvI GCAGC 2 cut(s) 38, 505
BccI CCATC 3 cut(s) 55, 115, 282
BciVI GTATCC 2 cut(s) 308, 821
BcoDI GTCTC 3 cut(s) 48, 656, 858
BfaI CTAG 1 cut(s) 213
BfmI CTRYAG 2 cut(s) 111, 519
BfuI GTATCC 2 cut(s) 308, 821
BglII AGATCT 1 cut(s) 883
BisI GCNGC 3 cut(s) 24, 27, 519
BlsI GCNGC 3 cut(s) 25, 28, 520
BmeT110I CYCGRG 1 cut(s) 383
Bpu10I CCTNAGC 1 cut(s) 19
BpuEI CTTGAG 2 cut(s) 712, 853
BsaAI YACGTR 1 cut(s) 319
BsaI GGTCTC 1 cut(s) 858
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 932
Bse1I ACTGG 2 cut(s) 487, 515
BseLI CCNNNNNNNGG 2 cut(s) 497, 932
BseMII CTCAG 2 cut(s) 59, 176
BseNI ACTGG 2 cut(s) 487, 515
BseRI GAGGAG 1 cut(s) 773
BseXI GCAGC 2 cut(s) 38, 505
BsiHKCI CYCGRG 1 cut(s) 383
BslI CCNNNNNNNGG 2 cut(s) 497, 932
BsmAI GTCTC 3 cut(s) 48, 656, 858
Bso31I GGTCTC 1 cut(s) 858
BsoBI CYCGRG 1 cut(s) 383
Bsp143I GATC 5 cut(s) 51, 103, 255, 844, 883
BspACI CCGC 3 cut(s) 24, 596, 796
BspCNI CTCAG 2 cut(s) 58, 175
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 3 cut(s) 98, 263, 852
BspTNI GGTCTC 1 cut(s) 858
BsrI ACTGG 2 cut(s) 487, 515
BssMI GATC 5 cut(s) 51, 103, 255, 844, 883
Bst6I CTCTTC 1 cut(s) 663
BstBAI YACGTR 1 cut(s) 319
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 5 cut(s) 19, 45, 162, 550, 654
BstENI CCTNNNNNAGG 1 cut(s) 930
BstKTI GATC 5 cut(s) 54, 106, 258, 847, 886
BstMAI GTCTC 3 cut(s) 48, 656, 858
BstMBI GATC 5 cut(s) 51, 103, 255, 844, 883
BstMWI GCNNNNNNNGC 2 cut(s) 23, 919
BstSFI CTRYAG 2 cut(s) 111, 519
BstV1I GCAGC 2 cut(s) 38, 505
BstX2I RGATCY 3 cut(s) 103, 844, 883
BstYI RGATCY 3 cut(s) 103, 844, 883
BsuI GTATCC 2 cut(s) 308, 821
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 2 cut(s) 172, 480
Cac8I GCNNGC 1 cut(s) 594
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
DdeI CTNAG 5 cut(s) 19, 45, 162, 550, 654
DpnI GATC 5 cut(s) 53, 105, 257, 846, 885
DpnII GATC 5 cut(s) 51, 103, 255, 844, 883
DraI TTTAAA 1 cut(s) 201
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 663
EarI CTCTTC 1 cut(s) 663
Eco31I GGTCTC 1 cut(s) 858
Eco32I GATATC 1 cut(s) 159
Eco57I CTGAAG 2 cut(s) 590, 948
Eco88I CYCGRG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 930
EcoRV GATATC 1 cut(s) 159
EcoT22I ATGCAT 1 cut(s) 197
FalI AAGNNNNNCTT 6 cut(s) 114, 146, 380, 412, 576, 608
FauNDI CATATG 1 cut(s) 628
FblI GTMKAC 1 cut(s) 411
Fnu4HI GCNGC 3 cut(s) 24, 27, 519
Fsp4HI GCNGC 3 cut(s) 24, 27, 519
FspBI CTAG 1 cut(s) 213
GluI GCNGC 3 cut(s) 24, 27, 519
HindIII AAGCTT 2 cut(s) 590, 966
HinfI GANTC 5 cut(s) 41, 209, 329, 422, 617
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 412
Hpy188I TCNGA 2 cut(s) 48, 427
Hpy188III TCNNGA 4 cut(s) 55, 154, 443, 691
Hpy8I GTNNAC 1 cut(s) 412
HpyAV CCTTC 2 cut(s) 29, 923
HpyCH4IV ACGT 3 cut(s) 318, 531, 790
HpyCH4V TGCA 5 cut(s) 4, 195, 380, 521, 913
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 919
HpyF3I CTNAG 5 cut(s) 19, 45, 162, 550, 654
HpySE526I ACGT 3 cut(s) 318, 531, 790
Kzo9I GATC 5 cut(s) 51, 103, 255, 844, 883
LmnI GCTCC 2 cut(s) 241, 681
LpnPI CCDG 7 cut(s) 468, 496, 693, 810, 812, 894, 939
Lsp1109I GCAGC 2 cut(s) 38, 505
MaeI CTAG 1 cut(s) 213
MaeII ACGT 3 cut(s) 318, 531, 790
MaeIII GTNAC 4 cut(s) 65, 448, 476, 791
MalI GATC 5 cut(s) 53, 105, 257, 846, 885
MboI GATC 5 cut(s) 51, 103, 255, 844, 883
MboII GAAGA 5 cut(s) 680, 739, 775, 956, 959
MflI RGATCY 3 cut(s) 103, 844, 883
MluCI AATT 1 cut(s) 392
MlyI GAGTC 2 cut(s) 50, 416
MnlI CCTC 7 cut(s) 172, 348, 664, 751, 814, 828, 926
Mph1103I ATGCAT 1 cut(s) 197
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 5 cut(s) 80, 200, 495, 563, 714
MspA1I CMGCKG 1 cut(s) 707
MwoI GCNNNNNNNGC 2 cut(s) 23, 919
NdeI CATATG 1 cut(s) 628
NdeII GATC 5 cut(s) 51, 103, 255, 844, 883
NmuCI GTSAC 1 cut(s) 448
NsiI ATGCAT 1 cut(s) 197
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 3 cut(s) 209, 329, 617
PkrI GCNGC 3 cut(s) 25, 28, 520
PleI GAGTC 2 cut(s) 49, 416
PpsI GAGTC 2 cut(s) 49, 416
Ppu21I YACGTR 1 cut(s) 319
PsiI TTATAA 1 cut(s) 734
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 3 cut(s) 103, 844, 883
PvuII CAGCTG 1 cut(s) 707
SaqAI TTAA 5 cut(s) 80, 200, 495, 563, 714
SatI GCNGC 3 cut(s) 24, 27, 519
Sau3AI GATC 5 cut(s) 51, 103, 255, 844, 883
SchI GAGTC 2 cut(s) 50, 416
SfcI CTRYAG 2 cut(s) 111, 519
SmlI CTYRAG 2 cut(s) 691, 832
SmoI CTYRAG 2 cut(s) 691, 832
Sse9I AATT 1 cut(s) 392
SsiI CCGC 3 cut(s) 24, 596, 796
SspMI CTAG 1 cut(s) 213
TaiI ACGT 3 cut(s) 321, 534, 793
TaqI TCGA 2 cut(s) 258, 971
TasI AATT 1 cut(s) 392
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 3 cut(s) 209, 329, 617
Tru1I TTAA 5 cut(s) 80, 200, 495, 563, 714
Tru9I TTAA 5 cut(s) 80, 200, 495, 563, 714
TscAI CASTG 2 cut(s) 179, 487
TseFI GTSAC 1 cut(s) 448
TseI GCWGC 2 cut(s) 26, 518
Tsp45I GTSAC 1 cut(s) 448
TspDTI ATGAA 5 cut(s) 420, 558, 630, 739, 801
TspGWI ACGGA 3 cut(s) 222, 300, 341
TspRI CASTG 2 cut(s) 179, 487
XagI CCTNNNNNAGG 1 cut(s) 930
XmiI GTMKAC 1 cut(s) 411
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 213
Zsp2I ATGCAT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.