AT3G49510

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
18353891 .. 18355057
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G49510.1

Sequence Viewer

Length: 1167 bp
ATGACGACAATTTCCGATCTATCAGATGATTTGGTAGGTGATATTCTTTCTAGGGTTCCATTTACATCTCTAATCTCAGTGCGATCTACTTGTAAAAAGTGGAATGCTTTATCGAAAAATCAGATCTTTGGTAGAAAAACAGCAGCAAGGAATCAATTTCTAGAGTTCATGATTCTAGATTCTAGAGTTTGTTCTTTGAGATTAGATCTTCAAGGAATCCGTAACGAAGACAAAGAAGACTTCGTTGATCCATCTATGAAGCTAATAAGTATACCTAGTAATGATGATCAAGTCGAGATATCTCAAGTCTATCATTGCGATGGCTTATTGTTATGCATCGCCAAAGAGAACTCGAATGTCTTTGTGTGGAATCCGTATTTGGGGCAAACGAAATGGATTCGACCAAGAAACACATTCCACAGATATGACAGGTTTGCTCTTGGATACGACAACAACCGTAACCACAAAATCTTGAGGTTTCTCTATGATGAAGAGAGCAACGAAAGCAGTCGAAGAACTCACATTGATGTATACGATTTTAGCTCTGATTCATGGAGGGTTCTTGATGTCAATCCTGACTGTGATATACCGTTTTATCAGACCGGAGTGTCTTTGAAGGGAAATACTTACTTCTTCGGTCAAGAAGTGACACAAGCGACGAAAGTAACAGAGATTGAAACTTGTTTACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCGTGTTTGCCTCTGCTGTTTTACCCTCCCTGTCCTAGTTTTGAAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGCTGTGTTATACAACCACTACGTCACAGCTGAGATTATAGAGATTAGGATTTCGACTAAGATTGAACCCAATGCGGTATCCTGGAGCTCTTTTTTGACTGTGGATATGTCACTAGTCAATGGTTTACCGGATCATTTTTCGATGTACTTTGAAGCTAAGAGCTTCTTCATTGACGAGGAGAAGAAAGTTGTTGTGCTTTTTGATAGTAAAGAGATCAAGACCTGTCGCTACCAAATGGCTTACATCGTTGGAGATGATGGATACTTCAAATCTGTCAACATTGGAGTAAGTCCGAATTCCCAGCGGAAACCAGGCAGACTTGTGTGCTCTTCTTATGTTCCAAGTTTAGTTCAACTGCAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

388

Amino Acids

44.77

Weight (kDa)

5.33

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 1.4e-09 F-box domain
FBA_1 PF07734 56 - 386 1.1e-109 F-box associated beta propeller domain
FBA_3 PF08268 89 - 239 1.7e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 607
AccI GTMKAC 2 cut(s) 271, 531
AciI CCGC 2 cut(s) 875, 1105
AclWI GGATC 2 cut(s) 242, 939
AcsI RAATTY 1 cut(s) 1096
AfaI GTAC 1 cut(s) 947
AfiI CCNNNNNNNGG 1 cut(s) 380
AgsI TTSAA 8 cut(s) 212, 616, 677, 764, 866, 953, 1069, 1154
AhlI ACTAGT 1 cut(s) 913
AjnI CCWGG 2 cut(s) 881, 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 7 cut(s) 262, 543, 799, 830, 888, 956, 963
AluI AGCT 7 cut(s) 262, 543, 799, 830, 888, 956, 963
Alw21I GWGCWC 2 cut(s) 890, 1130
AlwI GGATC 2 cut(s) 242, 939
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 1096
AspS9I GGNCC 1 cut(s) 719
AsuHPI GGTGA 1 cut(s) 50
AvaII GGWCC 1 cut(s) 719
BanII GRGCYC 1 cut(s) 890
BbsI GAAGAC 2 cut(s) 234, 243
Bbv12I GWGCWC 2 cut(s) 890, 1130
BbvI GCAGC 1 cut(s) 155
BccI CCATC 3 cut(s) 259, 314, 1052
BciT130I CCWGG 2 cut(s) 883, 1113
BciVI GTATCC 3 cut(s) 437, 889, 1055
BclI TGATCA 1 cut(s) 286
BcuI ACTAGT 1 cut(s) 913
BfaI CTAG 7 cut(s) 51, 161, 176, 183, 276, 756, 914
BfuI GTATCC 3 cut(s) 437, 889, 1055
BglII AGATCT 2 cut(s) 123, 205
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 883, 1113
Bme18I GGWCC 1 cut(s) 719
BmgT120I GGNCC 1 cut(s) 719
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 883, 1113
BmsI GCATC 1 cut(s) 345
BpiI GAAGAC 2 cut(s) 234, 243
BpmI CTGGAG 1 cut(s) 904
BpuEI CTTGAG 2 cut(s) 288, 493
BsaBI GATNNNNATC 1 cut(s) 570
BsaWI WCCGGW 2 cut(s) 602, 928
Bsc4I CCNNNNNNNGG 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 570
BseBI CCWGG 2 cut(s) 883, 1113
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 1 cut(s) 380
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 90, 822
BseRI GAGGAG 1 cut(s) 992
BseXI GCAGC 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 1101
BsiHKAI GWGCWC 2 cut(s) 890, 1130
BsiSI CCGG 2 cut(s) 603, 929
BslI CCNNNNNNNGG 1 cut(s) 380
BsmI GAATGC 1 cut(s) 109
Bsp1286I GDGCHC 2 cut(s) 890, 1130
Bsp143I GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
BspACI CCGC 2 cut(s) 875, 1105
BspCNI CTCAG 2 cut(s) 89, 823
BspHI TCATGA 1 cut(s) 168
BspLI GGNNCC 1 cut(s) 57
BspPI GGATC 2 cut(s) 242, 939
BspQI GCTCTTC 1 cut(s) 1135
BsrDI GCAATG 1 cut(s) 313
BssMI GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
BssNAI GTATAC 2 cut(s) 272, 532
Bst1107I GTATAC 2 cut(s) 272, 532
Bst2UI CCWGG 2 cut(s) 883, 1113
Bst4CI ACNGT 6 cut(s) 458, 581, 591, 723, 769, 901
Bst6I CTCTTC 2 cut(s) 486, 1135
BstC8I GCNNGC 1 cut(s) 801
BstDEI CTNAG 4 cut(s) 76, 831, 858, 957
BstKTI GATC 8 cut(s) 19, 86, 126, 208, 250, 289, 934, 1017
BstMBI GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
BstMWI GCNNNNNNNGC 1 cut(s) 504
BstNI CCWGG 2 cut(s) 883, 1113
BstSCI CCNGG 2 cut(s) 881, 1111
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 2 cut(s) 234, 243
BstX2I RGATCY 2 cut(s) 123, 205
BstYI RGATCY 2 cut(s) 123, 205
BstZ17I GTATAC 2 cut(s) 272, 532
BsuI GTATCC 3 cut(s) 437, 889, 1055
BtgZI GCGATG 2 cut(s) 322, 333
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 801
CciI TCATGA 1 cut(s) 168
Cfr13I GGNCC 1 cut(s) 719
Csp6I GTAC 1 cut(s) 946
CviAII CATG 2 cut(s) 169, 552
CviJI RGCY 9 cut(s) 262, 324, 543, 799, 830, 888, 956, 963, 1040
CviKI_1 RGCY 9 cut(s) 262, 324, 543, 799, 830, 888, 956, 963, 1040
CviQI GTAC 1 cut(s) 946
DdeI CTNAG 4 cut(s) 76, 831, 858, 957
DpnI GATC 8 cut(s) 18, 85, 125, 207, 249, 288, 933, 1016
DpnII GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
DrdI GACNNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 607
Eam1104I CTCTTC 2 cut(s) 486, 1135
EarI CTCTTC 2 cut(s) 486, 1135
Ecl136II GAGCTC 1 cut(s) 888
Eco24I GRGCYC 1 cut(s) 890
Eco32I GATATC 1 cut(s) 300
Eco47I GGWCC 1 cut(s) 719
Eco53kI GAGCTC 1 cut(s) 888
EcoICRI GAGCTC 1 cut(s) 888
EcoRI GAATTC 1 cut(s) 1096
EcoRII CCWGG 2 cut(s) 881, 1111
EcoRV GATATC 1 cut(s) 300
EcoT22I ATGCAT 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 890
FaeI CATG 2 cut(s) 172, 555
FalI AAGNNNNNCTT 2 cut(s) 950, 982
FatI CATG 2 cut(s) 168, 551
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 2 cut(s) 271, 531
Fnu4HI GCNGC 1 cut(s) 144
FriOI GRGCYC 1 cut(s) 890
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 7 cut(s) 51, 161, 176, 183, 276, 756, 914
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 1 cut(s) 1105
GsuI CTGGAG 1 cut(s) 904
HapII CCGG 2 cut(s) 603, 929
Hin1II CATG 2 cut(s) 172, 555
HincII GTYRAC 1 cut(s) 1078
HindII GTYRAC 1 cut(s) 1078
HinfI GANTC 8 cut(s) 151, 172, 179, 216, 370, 397, 548, 772
HpaII CCGG 2 cut(s) 603, 929
HphI GGTGA 1 cut(s) 50
Hpy166II GTNNAC 5 cut(s) 272, 532, 686, 926, 1078
Hpy188I TCNGA 6 cut(s) 16, 25, 123, 547, 600, 1095
Hpy8I GTNNAC 5 cut(s) 272, 532, 686, 926, 1078
Hpy99I CGWCG 1 cut(s) 661
HpyAV CCTTC 1 cut(s) 610
HpyCH4III ACNGT 6 cut(s) 458, 581, 591, 723, 769, 901
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 2 cut(s) 336, 1159
HpyF10VI GCNNNNNNNGC 1 cut(s) 504
HpyF3I CTNAG 4 cut(s) 76, 831, 858, 957
HpySE526I ACGT 1 cut(s) 822
Hsp92II CATG 2 cut(s) 172, 555
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
LguI GCTCTTC 1 cut(s) 1135
LmnI GCTCC 1 cut(s) 885
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 1 cut(s) 345
MaeI CTAG 7 cut(s) 51, 161, 176, 183, 276, 756, 914
MaeII ACGT 1 cut(s) 822
MaeIII GTNAC 7 cut(s) 221, 458, 646, 664, 769, 823, 909
MalI GATC 8 cut(s) 18, 85, 125, 207, 249, 288, 933, 1016
MboI GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
MboII GAAGA 9 cut(s) 200, 239, 248, 503, 525, 625, 958, 994, 1122
MflI RGATCY 2 cut(s) 123, 205
MhlI GDGCHC 2 cut(s) 890, 1130
MluCI AATT 3 cut(s) 9, 155, 1096
MlyI GAGTC 1 cut(s) 766
MmeI TCCRAC 1 cut(s) 1030
MnlI CCTC 5 cut(s) 468, 549, 741, 756, 970
Mph1103I ATGCAT 1 cut(s) 338
MslI CAYNNNNRTG 3 cut(s) 318, 423, 525
MspA1I CMGCKG 2 cut(s) 830, 1105
MspI CCGG 2 cut(s) 603, 929
MspR9I CCNGG 2 cut(s) 883, 1113
Mva1269I GAATGC 1 cut(s) 109
MvaI CCWGG 2 cut(s) 883, 1113
MwoI GCNNNNNNNGC 1 cut(s) 504
NdeII GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
NlaIII CATG 2 cut(s) 172, 555
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 4 cut(s) 646, 769, 823, 909
NsiI ATGCAT 1 cut(s) 338
PagI TCATGA 1 cut(s) 168
PciSI GCTCTTC 1 cut(s) 1135
PctI GAATGC 1 cut(s) 109
PfeI GAWTC 7 cut(s) 151, 172, 179, 216, 370, 397, 548
PfoI TCCNGGA 1 cut(s) 881
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 1 cut(s) 766
PpsI GAGTC 1 cut(s) 766
Psp124BI GAGCTC 1 cut(s) 890
Psp6I CCWGG 2 cut(s) 881, 1111
PspFI CCCAGC 1 cut(s) 1101
PspGI CCWGG 2 cut(s) 881, 1111
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 719
PsuI RGATCY 2 cut(s) 123, 205
PvuII CAGCTG 1 cut(s) 830
RsaI GTAC 1 cut(s) 947
RsaNI GTAC 1 cut(s) 946
RseI CAYNNNNRTG 3 cut(s) 318, 423, 525
SacI GAGCTC 1 cut(s) 890
SapI GCTCTTC 1 cut(s) 1135
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 8 cut(s) 16, 83, 123, 205, 247, 286, 931, 1014
Sau96I GGNCC 1 cut(s) 719
SchI GAGTC 1 cut(s) 766
ScrFI CCNGG 2 cut(s) 883, 1113
SduI GDGCHC 2 cut(s) 890, 1130
SfaNI GCATC 1 cut(s) 345
SinI GGWCC 1 cut(s) 719
SmiMI CAYNNNNRTG 3 cut(s) 318, 423, 525
SmlI CTYRAG 2 cut(s) 303, 472
SmoI CTYRAG 2 cut(s) 303, 472
SpeI ACTAGT 1 cut(s) 913
Sse9I AATT 3 cut(s) 9, 155, 1096
SsiI CCGC 2 cut(s) 875, 1105
SspMI CTAG 7 cut(s) 51, 161, 176, 183, 276, 756, 914
SstI GAGCTC 1 cut(s) 890
StyD4I CCNGG 2 cut(s) 881, 1111
TaaI ACNGT 6 cut(s) 458, 581, 591, 723, 769, 901
TaiI ACGT 1 cut(s) 825
TaqI TCGA 7 cut(s) 113, 294, 353, 400, 511, 854, 941
TaqII GACCGA 1 cut(s) 626
TasI AATT 3 cut(s) 9, 155, 1096
TatI WGTACW 1 cut(s) 945
TfiI GAWTC 7 cut(s) 151, 172, 179, 216, 370, 397, 548
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 4 cut(s) 646, 769, 823, 909
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 4 cut(s) 646, 769, 823, 909
TspDTI ATGAA 5 cut(s) 157, 272, 504, 540, 958
TspGWI ACGGA 2 cut(s) 209, 363
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 719
XapI RAATTY 1 cut(s) 1096
XbaI TCTAGA 3 cut(s) 160, 175, 182
XmiI GTMKAC 2 cut(s) 271, 531
XspI CTAG 7 cut(s) 51, 161, 176, 183, 276, 756, 914
Zsp2I ATGCAT 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.