AT3G17320

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
5915427 .. 5916656
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17320.1

Sequence Viewer

Length: 1230 bp
ATGACGAAAATTTCCGATCTTCCTCGGGATTTGGCAGAGGAGGTGCTCTCTAGGGTCCCAGTGACATACCTAAGAGCAATACGATTCACTTGCAAAAAGTGGAACACTTTAACCAAACGTAGAAGCTTTACAAAGAAGCTGATTGGTCAAGAAAAAGCCGAAGCAAAAGTGAAAGAGTTTCATGCGATCATGACGTTGAATTCTAGACTTCATCTGATGAGCGTCAATCTAGATGGAATTCACAAAGACGAAAACGTTGAATCATCTATAAAGCAGAAAGGTAAACTTATTAGCCTAACCGTTGCTGATCCTGATAGAATAGTTATATCTCAAGTTTATCACTGCGATGGTTTGTTGTTATGCATCACCAATGAAATAAACTCTAGGCTTGTAGTTTGGAACCCTTATAGTGGGCAAACTAGGTGGATCGAACCTAGAACTTCTTACCGCGAATGGGACATCTACGCTCTAGGATACGAGAGTAAGAACAACGCCAAACGAAGCTACAAAATTTTGAGATATTTGGATGCTTACGAGGACATGGGCGATATGAGTGTAGAGCCTCGAACTAGAGTTTGCGAGTTTGAAATCTACAGTCTTGACACTAACTCTTGGAAGGTCATCGAGGTCACTACCGACTGGGATTTATGTTTTCTTCACCGTGGCGTGACTCTCAAGGGAAATACTTATTGGTTTGCTCGAGAGAAGATCCCACCACCCCCACGTGAAAGAGTGATAGAAGATATCCCACTAGGTGAAGCAGAGATAAACGTAGAGATCCCTAGTTTCTTACTATGTTTTGATTTTACAATAGAGAAATTTGGATCGCGTCTGCCTCTGCCATTTCGGCCTTGTGTTGATGATACCATAACTCTATCTAGTGTTAGAGAAGAGAAACTTGCGGTGTTATATCAGCGATGGGATATAACGTGGACGGGGATATGGATTAGTAATAAGATTGAGCCTAATGCAGTGTCGTGGAGCAAGCTATTTTTTCCAATGGGTAGGATAAGACCACTCGAGGCTGCATCTGGTACTTTCTTCGTTGACGAAGAGAACAAACTCGTGGTGCTTTTTGATAAAGGCGAGAGTATACTTAACCCCACTCGTAACACAGCTTACATCGTTGGAGAAGATGGATACATCAAACCAGTGGATCTCGGTGAGTCTGTACACAAATATTGCTTTCCACTTGCGTGCTCTTATGTTCCAAGTTCTGTGCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

409

Amino Acids

47.29

Weight (kDa)

6.63

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 1.9e-09 F-box domain
FBA_1 PF07734 62 - 409 1.2e-106 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1093
AccII CGCG 2 cut(s) 450, 829
AciI CCGC 2 cut(s) 448, 902
AclI AACGTT 1 cut(s) 255
AclWI GGATC 6 cut(s) 302, 434, 703, 772, 832, 1164
AcsI RAATTY 5 cut(s) 9, 199, 237, 510, 818
AcvI CACGTG 1 cut(s) 725
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 2 cut(s) 1036, 1173
AfiI CCNNNNNNNGG 2 cut(s) 410, 454
AgsI TTSAA 3 cut(s) 199, 260, 587
AjuI GAANNNNNNNTTGG 2 cut(s) 673, 705
AleI CACNNNNGTG 1 cut(s) 1195
AluBI AGCT 5 cut(s) 126, 139, 504, 988, 1118
AluI AGCT 5 cut(s) 126, 139, 504, 988, 1118
Alw21I GWGCWC 2 cut(s) 48, 1202
AlwI GGATC 6 cut(s) 302, 434, 703, 772, 832, 1164
Ama87I CYCGRG 3 cut(s) 24, 699, 1019
AoxI GGCC 1 cut(s) 848
ApeKI GCWGC 1 cut(s) 1025
ApoI RAATTY 5 cut(s) 9, 199, 237, 510, 818
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 4 cut(s) 358, 650, 767, 1175
AvaI CYCGRG 3 cut(s) 24, 699, 1019
AvaII GGWCC 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 466, 499
BauI CACGAG 1 cut(s) 1064
BbrPI CACGTG 1 cut(s) 725
Bbv12I GWGCWC 2 cut(s) 48, 1202
BbvI GCAGC 1 cut(s) 1012
BccI CCATC 4 cut(s) 227, 341, 912, 1130
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BciVI GTATCC 2 cut(s) 467, 1133
BfmI CTRYAG 1 cut(s) 592
BfuI GTATCC 2 cut(s) 467, 1133
BglI GCCNNNNNGGC 1 cut(s) 847
BisI GCNGC 1 cut(s) 1026
BlsI GCNGC 1 cut(s) 1027
Bme18I GGWCC 1 cut(s) 55
BmeT110I CYCGRG 3 cut(s) 24, 699, 1019
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 3 cut(s) 56, 57, 401
BmrI ACTGGG 2 cut(s) 53, 649
BmsI GCATC 3 cut(s) 372, 517, 1037
BmuI ACTGGG 2 cut(s) 53, 649
BplI GAGNNNNNCTC 2 cut(s) 32, 64
BpuEI CTTGAG 2 cut(s) 315, 659
BsaAI YACGTR 1 cut(s) 725
BsaJI CCNNGG 2 cut(s) 23, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 454
Bse1I ACTGG 3 cut(s) 59, 644, 1151
BseDI CCNNGG 2 cut(s) 23, 661
BseGI GGATG 1 cut(s) 532
BseLI CCNNNNNNNGG 2 cut(s) 410, 454
BseNI ACTGG 3 cut(s) 59, 644, 1151
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 1012
Bsh1236I CGCG 2 cut(s) 450, 829
BshFI GGCC 1 cut(s) 850
BsiHKAI GWGCWC 2 cut(s) 48, 1202
BsiHKCI CYCGRG 3 cut(s) 24, 699, 1019
BslFI GGGAC 2 cut(s) 41, 470
BslI CCNNNNNNNGG 2 cut(s) 410, 454
BsmFI GGGAC 2 cut(s) 41, 470
BsnI GGCC 1 cut(s) 850
BsoBI CYCGRG 3 cut(s) 24, 699, 1019
Bsp1286I GDGCHC 2 cut(s) 48, 1202
Bsp1407I TGTACA 1 cut(s) 1171
Bsp143I GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
BspACI CCGC 2 cut(s) 448, 902
BspANI GGCC 1 cut(s) 850
BspFNI CGCG 2 cut(s) 450, 829
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 56, 57, 401
BspPI GGATC 6 cut(s) 302, 434, 703, 772, 832, 1164
BsrGI TGTACA 1 cut(s) 1171
BsrI ACTGG 3 cut(s) 59, 644, 1151
BssECI CCNNGG 2 cut(s) 23, 661
BssMI GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
BssNAI GTATAC 1 cut(s) 1094
BssSI CACGAG 1 cut(s) 1064
Bst1107I GTATAC 1 cut(s) 1094
Bst2BI CACGAG 1 cut(s) 1064
Bst4CI ACNGT 3 cut(s) 301, 596, 662
Bst6I CTCTTC 2 cut(s) 885, 1047
BstAUI TGTACA 1 cut(s) 1171
BstBAI YACGTR 1 cut(s) 725
BstC8I GCNNGC 2 cut(s) 986, 1198
BstDEI CTNAG 1 cut(s) 71
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 2 cut(s) 450, 829
BstKTI GATC 8 cut(s) 19, 189, 310, 429, 711, 780, 827, 1159
BstMBI GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
BstMWI GCNNNNNNNGC 1 cut(s) 847
BstSFI CTRYAG 1 cut(s) 592
BstUI CGCG 2 cut(s) 450, 829
BstV1I GCAGC 1 cut(s) 1012
BstX2I RGATCY 3 cut(s) 708, 777, 1156
BstYI RGATCY 3 cut(s) 708, 777, 1156
BstZ17I GTATAC 1 cut(s) 1094
BsuI GTATCC 2 cut(s) 467, 1133
BsuRI GGCC 1 cut(s) 850
BtgI CCRYGG 1 cut(s) 661
BtgZI GCGATG 2 cut(s) 360, 931
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 2 cut(s) 340, 978
BtsIMutI CAGTG 4 cut(s) 66, 340, 978, 1158
Cac8I GCNNGC 2 cut(s) 986, 1198
CciI TCATGA 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 2 cut(s) 211, 818
Csp6I GTAC 2 cut(s) 1035, 1172
CspCI CAANNNNNGTGG 2 cut(s) 404, 439
CviAII CATG 3 cut(s) 182, 190, 541
CviQI GTAC 2 cut(s) 1035, 1172
DdeI CTNAG 1 cut(s) 71
DpnI GATC 8 cut(s) 18, 188, 309, 428, 710, 779, 826, 1158
DpnII GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
DraIII CACNNNGTG 1 cut(s) 755
Eam1104I CTCTTC 2 cut(s) 885, 1047
EarI CTCTTC 2 cut(s) 885, 1047
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 1 cut(s) 55
Eco72I CACGTG 1 cut(s) 725
Eco88I CYCGRG 3 cut(s) 24, 699, 1019
EcoO109I RGGNCCY 1 cut(s) 55
EcoRI GAATTC 2 cut(s) 199, 237
EcoRV GATATC 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 365
FaeI CATG 3 cut(s) 185, 193, 544
FalI AAGNNNNNCTT 4 cut(s) 270, 302, 882, 914
FaqI GGGAC 2 cut(s) 41, 470
FatI CATG 3 cut(s) 181, 189, 540
FblI GTMKAC 1 cut(s) 1093
Fnu4HI GCNGC 1 cut(s) 1026
FokI GGATG 1 cut(s) 539
Fsp4HI GCNGC 1 cut(s) 1026
GluI GCNGC 1 cut(s) 1026
HaeIII GGCC 1 cut(s) 850
HgaI GACGC 2 cut(s) 211, 818
Hin1II CATG 3 cut(s) 185, 193, 544
HincII GTYRAC 1 cut(s) 1048
HindII GTYRAC 1 cut(s) 1048
HindIII AAGCTT 1 cut(s) 124
HinfI GANTC 4 cut(s) 84, 260, 670, 1166
HphI GGTGA 4 cut(s) 358, 650, 767, 1175
Hpy166II GTNNAC 5 cut(s) 284, 933, 1048, 1094, 1174
Hpy188I TCNGA 2 cut(s) 16, 216
Hpy188III TCNNGA 8 cut(s) 26, 149, 190, 204, 230, 311, 599, 701
Hpy8I GTNNAC 5 cut(s) 284, 933, 1048, 1094, 1174
HpyAV CCTTC 1 cut(s) 610
HpyCH4III ACNGT 3 cut(s) 301, 596, 662
HpyCH4IV ACGT 6 cut(s) 118, 194, 255, 724, 771, 929
HpyCH4V TGCA 5 cut(s) 93, 363, 971, 1028, 1222
HpyF10VI GCNNNNNNNGC 1 cut(s) 847
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 6 cut(s) 118, 194, 255, 724, 771, 929
Hsp92II CATG 3 cut(s) 185, 193, 544
KflI GGGWCCC 1 cut(s) 55
Kzo9I GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
LmnI GCTCC 1 cut(s) 981
LpnPI CCDG 5 cut(s) 72, 324, 625, 1017, 1164
Lsp1109I GCAGC 1 cut(s) 1012
LweI GCATC 3 cut(s) 372, 517, 1037
MaeII ACGT 6 cut(s) 118, 194, 255, 724, 771, 929
MaeIII GTNAC 4 cut(s) 61, 628, 667, 1109
MalI GATC 8 cut(s) 18, 188, 309, 428, 710, 779, 826, 1158
MboI GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
MboII GAAGA 8 cut(s) 11, 647, 718, 752, 902, 1033, 1064, 1145
MflI RGATCY 3 cut(s) 708, 777, 1156
MhlI GDGCHC 2 cut(s) 48, 1202
MluCI AATT 5 cut(s) 9, 199, 237, 510, 818
MlyI GAGTC 2 cut(s) 664, 1175
MmeI TCCRAC 1 cut(s) 1108
MnlI CCTC 8 cut(s) 31, 33, 34, 529, 573, 619, 846, 1015
Mph1103I ATGCAT 1 cut(s) 365
MseI TTAA 2 cut(s) 110, 1098
MslI CAYNNNNRTG 2 cut(s) 345, 1195
MvnI CGCG 2 cut(s) 450, 829
MwoI GCNNNNNNNGC 1 cut(s) 847
NdeII GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
NlaIII CATG 3 cut(s) 185, 193, 544
NlaIV GGNNCC 3 cut(s) 56, 57, 401
NmuCI GTSAC 3 cut(s) 61, 628, 667
NsiI ATGCAT 1 cut(s) 365
OliI CACNNNNGTG 1 cut(s) 1195
PaeR7I CTCGAG 2 cut(s) 699, 1019
PagI TCATGA 1 cut(s) 189
PfeI GAWTC 2 cut(s) 84, 260
PkrI GCNGC 1 cut(s) 1027
PleI GAGTC 2 cut(s) 664, 1174
PmaCI CACGTG 1 cut(s) 725
PmlI CACGTG 1 cut(s) 725
PpsI GAGTC 2 cut(s) 664, 1174
Ppu21I YACGTR 1 cut(s) 725
PpuMI RGGWCCY 1 cut(s) 55
Psp1406I AACGTT 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 55
PspCI CACGTG 1 cut(s) 725
PspN4I GGNNCC 3 cut(s) 56, 57, 401
PspPI GGNCC 1 cut(s) 55
PspPPI RGGWCCY 1 cut(s) 55
PspXI VCTCGAGB 1 cut(s) 1019
PsuI RGATCY 3 cut(s) 708, 777, 1156
RsaI GTAC 2 cut(s) 1036, 1173
RsaNI GTAC 2 cut(s) 1035, 1172
RseI CAYNNNNRTG 2 cut(s) 345, 1195
SaqAI TTAA 2 cut(s) 110, 1098
SatI GCNGC 1 cut(s) 1026
Sau3AI GATC 8 cut(s) 16, 186, 307, 426, 708, 777, 824, 1156
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 2 cut(s) 664, 1175
SduI GDGCHC 2 cut(s) 48, 1202
SfaNI GCATC 3 cut(s) 372, 517, 1037
SfcI CTRYAG 1 cut(s) 592
Sfr274I CTCGAG 2 cut(s) 699, 1019
SinI GGWCC 1 cut(s) 55
SlaI CTCGAG 2 cut(s) 699, 1019
SmiMI CAYNNNNRTG 2 cut(s) 345, 1195
SmlI CTYRAG 4 cut(s) 330, 674, 699, 1019
SmoI CTYRAG 4 cut(s) 330, 674, 699, 1019
Sse9I AATT 5 cut(s) 9, 199, 237, 510, 818
SsiI CCGC 2 cut(s) 448, 902
SspI AATATT 1 cut(s) 1181
TaaI ACNGT 3 cut(s) 301, 596, 662
TaiI ACGT 6 cut(s) 121, 197, 258, 727, 774, 932
TaqI TCGA 5 cut(s) 429, 565, 624, 700, 1020
TasI AATT 5 cut(s) 9, 199, 237, 510, 818
TatI WGTACW 1 cut(s) 1171
TfiI GAWTC 2 cut(s) 84, 260
Tru1I TTAA 2 cut(s) 110, 1098
Tru9I TTAA 2 cut(s) 110, 1098
TscAI CASTG 4 cut(s) 66, 347, 978, 1158
TseFI GTSAC 3 cut(s) 61, 628, 667
TseI GCWGC 1 cut(s) 1025
Tsp45I GTSAC 3 cut(s) 61, 628, 667
TspDTI ATGAA 3 cut(s) 170, 200, 387
TspRI CASTG 4 cut(s) 66, 347, 978, 1158
VpaK11BI GGWCC 1 cut(s) 55
XapI RAATTY 5 cut(s) 9, 199, 237, 510, 818
XbaI TCTAGA 2 cut(s) 203, 229
XhoI CTCGAG 2 cut(s) 699, 1019
XmiI GTMKAC 1 cut(s) 1093
Zsp2I ATGCAT 1 cut(s) 365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.