AT5G37040

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Forward (+)
14639135 .. 14639934
800 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37040.1

Sequence Viewer

Length: 729 bp
ATGGTGCCGAAAAAGCTTCCATTAGATCTGGAAGAAGAGATACTCTTTCGAGTTCCACCTCGATCTCTCCATTGCTTTAGATCCGTTTGCAAAGAATGGAACGCTCTTTCCAGAGATAAGAGATTAATCAACAAAAACTTTGCTTGCGCTCCTCCAGAATTCATCTTAAAGACACGTTCCAATATTTATTCGATAAGCGTCAATCTCAACGATGACAATCCAACTATAAATGTGCGTGACTTATGCTTTGGTGATCATTTACGGGGTCAACATTCTCTCTATGGGACCTGCGATGGTAACTTCTTCTTGTATGATCACTTTCACGAAGGAGGCGGATGCATGGTAGTAGACCCGAAAAGAGTTACAAGATTATTGAGAGAACGTGTCCTCTCGGTTTACAAGGGAGATCGGTTCTCGGTGTTAGAACAATCCAAAAAAACAAGGAAGATTGAGATTTGGGTGACGAAGAATAAAATTGGTAACGGGGATGATGGAGACGATGTGGTGTGGATTAAGTTTATGACTATCTCAAGACCTGACTTCCCCATGGTACTAATTAGTCACCCGTCTACAAATTACTTCGTGGAAAATAATATCTATGGAAAGGCCTTTGTTCTGTCTTGTCCTACCAAGAAACCTAAAGCAGCTTGGATTAAGATAGATGGAGTTGTATTCGCTAAGTCTGATCAGTCATCTGTCTTTGTTCCCAGTTTGATCACCATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

242

Amino Acids

27.7

Weight (kDa)

9.12

Isoelectric Point (pI)

44.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 42 1.9e-07 F-box domain
FBA_1 PF07734 126 - 241 6.4e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 4
AccI GTMKAC 2 cut(s) 348, 569
AciI CCGC 1 cut(s) 333
AclWI GGATC 1 cut(s) 75
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 552
AflIII ACRYGT 2 cut(s) 173, 382
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 2 cut(s) 16, 647
AluI AGCT 2 cut(s) 16, 647
Alw26I GTCTC 1 cut(s) 489
AlwI GGATC 1 cut(s) 75
AoxI GGCC 1 cut(s) 606
ApeKI GCWGC 1 cut(s) 644
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
AseI ATTAAT 1 cut(s) 125
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 285
AsuHPI GGTGA 4 cut(s) 263, 472, 554, 709
AvaII GGWCC 1 cut(s) 285
BanI GGYRCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BbvI GCAGC 1 cut(s) 656
BccI CCATC 3 cut(s) 287, 485, 656
BclI TGATCA 4 cut(s) 253, 313, 685, 714
BcoDI GTCTC 1 cut(s) 489
BfuAI ACCTGC 1 cut(s) 296
BglII AGATCT 1 cut(s) 25
BisI GCNGC 1 cut(s) 645
BlsI GCNGC 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 285
BmgT120I GGNCC 1 cut(s) 285
BmiI GGNNCC 2 cut(s) 6, 286
BmrI ACTGGG 1 cut(s) 702
BmsI GCATC 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 702
BpmI CTGGAG 1 cut(s) 138
BpuEI CTTGAG 1 cut(s) 514
BsaBI GATNNNNATC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 486, 516
Bse1I ACTGG 1 cut(s) 708
Bse3DI GCAATG 1 cut(s) 70
Bse8I GATNNNNATC 1 cut(s) 216
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 2 cut(s) 341, 493
BseJI GATNNNNATC 1 cut(s) 216
BseMI GCAATG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 708
BseRI GAGGAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 656
BshFI GGCC 1 cut(s) 608
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 489
BsmBI CGTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 608
Bsp143I GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
Bsp19I CCATGG 1 cut(s) 546
BspACI CCGC 1 cut(s) 333
BspANI GGCC 1 cut(s) 608
BspLI GGNNCC 2 cut(s) 6, 286
BspMI ACCTGC 1 cut(s) 296
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 4
BsrDI GCAATG 1 cut(s) 70
BsrI ACTGG 1 cut(s) 708
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
BssT1I CCWWGG 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 678
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 2 cut(s) 341, 493
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 8 cut(s) 28, 65, 83, 256, 316, 409, 688, 717
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstV1I GCAGC 1 cut(s) 656
BstX2I RGATCY 2 cut(s) 25, 80
BstYI RGATCY 2 cut(s) 25, 80
BsuRI GGCC 1 cut(s) 608
BtgI CCRYGG 1 cut(s) 546
BtgZI GCGATG 1 cut(s) 306
BtsCI GGATG 2 cut(s) 341, 493
BveI ACCTGC 1 cut(s) 296
Cac8I GCNNGC 1 cut(s) 145
CfoI GCGC 1 cut(s) 149
Cfr13I GGNCC 1 cut(s) 285
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 551
CviAII CATG 2 cut(s) 340, 547
CviJI RGCY 3 cut(s) 16, 608, 647
CviKI_1 RGCY 3 cut(s) 16, 608, 647
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 1 cut(s) 678
DpnI GATC 8 cut(s) 27, 64, 82, 255, 315, 408, 687, 716
DpnII GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 546
Eco147I AGGCCT 1 cut(s) 608
Eco47I GGWCC 1 cut(s) 285
EcoO109I RGGNCCY 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 546
EcoT22I ATGCAT 1 cut(s) 341
ErhI CCWWGG 1 cut(s) 546
Esp3I CGTCTC 1 cut(s) 489
FaeI CATG 2 cut(s) 343, 550
FaiI YATR 8 cut(s) 227, 244, 282, 312, 341, 521, 548, 600
FaqI GGGAC 1 cut(s) 298
FatI CATG 2 cut(s) 339, 546
FbaI TGATCA 4 cut(s) 253, 313, 685, 714
FblI GTMKAC 2 cut(s) 348, 569
Fnu4HI GCNGC 1 cut(s) 645
FokI GGATG 2 cut(s) 348, 500
Fsp4HI GCNGC 1 cut(s) 645
GlaI GCGC 1 cut(s) 148
GluI GCNGC 1 cut(s) 645
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 608
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 343, 550
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 269
HindII GTYRAC 1 cut(s) 269
HindIII AAGCTT 1 cut(s) 14
HphI GGTGA 4 cut(s) 263, 472, 554, 709
Hpy166II GTNNAC 4 cut(s) 269, 349, 397, 570
Hpy188I TCNGA 1 cut(s) 685
Hpy188III TCNNGA 5 cut(s) 29, 111, 155, 323, 531
Hpy8I GTNNAC 4 cut(s) 269, 349, 397, 570
HpyAV CCTTC 1 cut(s) 320
HpyCH4IV ACGT 2 cut(s) 175, 382
HpyCH4V TGCA 2 cut(s) 90, 339
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 1 cut(s) 678
HpySE526I ACGT 2 cut(s) 175, 382
Hsp92II CATG 2 cut(s) 343, 550
HspAI GCGC 1 cut(s) 147
Ksp22I TGATCA 4 cut(s) 253, 313, 685, 714
Kzo9I GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 6 cut(s) 14, 124, 168, 301, 549, 721
Lsp1109I GCAGC 1 cut(s) 656
LweI GCATC 1 cut(s) 326
MaeII ACGT 2 cut(s) 175, 382
MaeIII GTNAC 6 cut(s) 236, 296, 361, 460, 479, 560
MalI GATC 8 cut(s) 27, 64, 82, 255, 315, 408, 687, 716
MboI GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
MboII GAAGA 5 cut(s) 44, 47, 295, 457, 478
MflI RGATCY 2 cut(s) 25, 80
MluCI AATT 4 cut(s) 158, 474, 555, 574
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 4 cut(s) 69, 162, 323, 398
Mph1103I ATGCAT 1 cut(s) 341
MseI TTAA 4 cut(s) 125, 167, 513, 654
MwoI GCNNNNNNNGC 1 cut(s) 13
NcoI CCATGG 1 cut(s) 546
NdeII GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
NlaIII CATG 2 cut(s) 343, 550
NlaIV GGNNCC 2 cut(s) 6, 286
NmuCI GTSAC 3 cut(s) 236, 460, 560
NsiI ATGCAT 1 cut(s) 341
PceI AGGCCT 1 cut(s) 608
PkrI GCNGC 1 cut(s) 646
PpuMI RGGWCCY 1 cut(s) 285
PshBI ATTAAT 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 6, 286
PspPI GGNCC 1 cut(s) 285
PspPPI RGGWCCY 1 cut(s) 285
PsuI RGATCY 2 cut(s) 25, 80
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
SaqAI TTAA 4 cut(s) 125, 167, 513, 654
SatI GCNGC 1 cut(s) 645
Sau3AI GATC 8 cut(s) 25, 62, 80, 253, 313, 406, 685, 714
Sau96I GGNCC 1 cut(s) 285
SetI ASST 8 cut(s) 18, 61, 178, 290, 385, 538, 640, 649
SfaNI GCATC 1 cut(s) 326
SinI GGWCC 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 4 cut(s) 158, 474, 555, 574
SseBI AGGCCT 1 cut(s) 608
SsiI CCGC 1 cut(s) 333
SspI AATATT 1 cut(s) 184
StuI AGGCCT 1 cut(s) 608
StyI CCWWGG 1 cut(s) 546
TaiI ACGT 2 cut(s) 178, 385
TaqI TCGA 3 cut(s) 49, 61, 191
TasI AATT 4 cut(s) 158, 474, 555, 574
Tru1I TTAA 4 cut(s) 125, 167, 513, 654
Tru9I TTAA 4 cut(s) 125, 167, 513, 654
TseFI GTSAC 3 cut(s) 236, 460, 560
TseI GCWGC 1 cut(s) 644
Tsp45I GTSAC 3 cut(s) 236, 460, 560
TspDTI ATGAA 1 cut(s) 151
TspGWI ACGGA 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 285
VspI ATTAAT 1 cut(s) 125
XapI RAATTY 1 cut(s) 158
XmiI GTMKAC 2 cut(s) 348, 569
Zsp2I ATGCAT 1 cut(s) 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.