AT3G19565

F-box LRR-repeat kelch-repeat protein At1g11620

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6796022 .. 6796906
885 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G19565.1

Sequence Viewer

Length: 375 bp
ATGCATCTGCCGTTTGAATCTTATCCTGACGATGCTGTGACTCTATCTTCTGTTAGAGAAGAAAAGCGTGTAGTGTTATTTAAGAGGTCGAATGCATGTGAGATGGAGATATGGATTACAACTAAGATTGACCCAACGCGGTCAGTGTTCAATGAAAGATTGAGGAATATAGATGTGAGCTTATTCGTGGACGAGAAGAAGAAAGTAGCATTGGTTTTCTGTAAAGACAGAGAAGATTGGACCAACTTCACAGCTTATATGATTGGAAAGGATGGATACTACAAAGAAGTGTATCTCGGAGAATCTACTACATCTTGGCCATTTGTGTACTCTTATATTCCAAGTAGGCCCGGTCTCTACAAGGATGTGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

124

Amino Acids

14.58

Weight (kDa)

5.87

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 2 - 115 3.2e-27 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 139
AciI CCGC 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 317
AfaI GTAC 1 cut(s) 329
AgsI TTSAA 2 cut(s) 17, 151
AjuI GAANNNNNNNTTGG 2 cut(s) 194, 226
AluBI AGCT 2 cut(s) 180, 254
AluI AGCT 2 cut(s) 180, 254
Alw26I GTCTC 1 cut(s) 359
AoxI GGCC 3 cut(s) 317, 347, 369
AspS9I GGNCC 2 cut(s) 240, 348
AsuC2I CCSGG 1 cut(s) 351
AvaII GGWCC 1 cut(s) 240
BalI TGGCCA 1 cut(s) 319
BccI CCATC 2 cut(s) 97, 266
BciVI GTATCC 1 cut(s) 269
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 1 cut(s) 359
BfuI GTATCC 1 cut(s) 269
Bme1390I CCNGG 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 2 cut(s) 240, 348
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 13, 22
BpuMI CCSGG 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 359
BseGI GGATG 2 cut(s) 277, 370
Bsh1236I CGCG 1 cut(s) 139
BshFI GGCC 3 cut(s) 319, 349, 371
BsiSI CCGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 97
BsnI GGCC 3 cut(s) 319, 349, 371
Bso31I GGTCTC 1 cut(s) 359
BspACI CCGC 1 cut(s) 139
BspANI GGCC 3 cut(s) 319, 349, 371
BspFNI CGCG 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 359
BstDEI CTNAG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 277, 370
BstFNI CGCG 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 349
BstUI CGCG 1 cut(s) 139
BsuI GTATCC 1 cut(s) 269
BsuRI GGCC 3 cut(s) 319, 349, 371
BtsCI GGATG 2 cut(s) 277, 370
BtsIMutI CAGTG 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 240, 348
Csp6I GTAC 1 cut(s) 328
CviAII CATG 1 cut(s) 96
CviJI RGCY 5 cut(s) 180, 254, 319, 349, 371
CviKI_1 RGCY 5 cut(s) 180, 254, 319, 349, 371
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 123
EaeI YGGCCR 1 cut(s) 317
Eco31I GGTCTC 1 cut(s) 359
Eco47I GGWCC 1 cut(s) 240
EcoT22I ATGCAT 2 cut(s) 6, 97
FaeI CATG 1 cut(s) 99
FaiI YATR 6 cut(s) 97, 112, 170, 258, 260, 336
FatI CATG 1 cut(s) 95
FokI GGATG 1 cut(s) 284
HaeIII GGCC 3 cut(s) 319, 349, 371
HapII CCGG 1 cut(s) 351
Hin1II CATG 1 cut(s) 99
HinfI GANTC 3 cut(s) 17, 40, 302
HpaII CCGG 1 cut(s) 351
Hpy166II GTNNAC 2 cut(s) 190, 328
Hpy188I TCNGA 1 cut(s) 299
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 190, 328
HpyCH4V TGCA 2 cut(s) 4, 95
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 99
LpnPI CCDG 2 cut(s) 39, 364
LweI GCATC 2 cut(s) 13, 22
MaeIII GTNAC 1 cut(s) 37
MboII GAAGA 5 cut(s) 39, 71, 208, 211, 245
MlsI TGGCCA 1 cut(s) 319
MluNI TGGCCA 1 cut(s) 319
MlyI GAGTC 1 cut(s) 34
MnlI CCTC 2 cut(s) 78, 156
Mox20I TGGCCA 1 cut(s) 319
Mph1103I ATGCAT 2 cut(s) 6, 97
MscI TGGCCA 1 cut(s) 319
MseI TTAA 1 cut(s) 81
Msp20I TGGCCA 1 cut(s) 319
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 97
MvnI CGCG 1 cut(s) 139
NciI CCSGG 1 cut(s) 351
NlaIII CATG 1 cut(s) 99
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 2 cut(s) 6, 97
NspI RCATGY 1 cut(s) 99
PctI GAATGC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 17, 302
PleI GAGTC 1 cut(s) 34
PpsI GAGTC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 240, 348
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 1 cut(s) 81
Sau96I GGNCC 2 cut(s) 240, 348
SchI GAGTC 1 cut(s) 34
ScrFI CCNGG 1 cut(s) 351
SetI ASST 3 cut(s) 89, 182, 256
SfaNI GCATC 2 cut(s) 13, 22
SinI GGWCC 1 cut(s) 240
SsiI CCGC 1 cut(s) 139
StyD4I CCNGG 1 cut(s) 349
TaqI TCGA 1 cut(s) 89
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 2 cut(s) 17, 302
Tru1I TTAA 1 cut(s) 81
Tru9I TTAA 1 cut(s) 81
TscAI CASTG 1 cut(s) 150
TseFI GTSAC 1 cut(s) 37
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 150
VpaK11BI GGWCC 1 cut(s) 240
XceI RCATGY 1 cut(s) 99
Zsp2I ATGCAT 2 cut(s) 6, 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.