AT1G53325

Weak chloroplast movement under blue light

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
19895227 .. 19895733
507 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53325.1

Sequence Viewer

Length: 507 bp
ATGGAAATTTGTACTGGACAGCTTATAATTCCAAAACTGGTCAGTATTTCATCCAAATGGCTCGATTTTTCCAAAGAGACATTAAAGATGTTCTGTATTCTACCATGTAAGGCGAAGAAAAGTACTACTCATACTCGTATCCTCTCTATTTACAAAGGAGATCGGTTTTCAGTGATGGAACAATGCAAAAGAACAAGGGAGATTGAGATTTGGGTGACAAAGAATAAAATTGGTAATGGGGATGATGGAAACGATGTTGTGTGGATTAAGTTCATGACTGTCTCAATACCTAACTTCCCCATGGTACTTTGTCATAATTCTACAAGTTACTTCGTCGATGATAGTATCTCTGGGAAGAGCTTCGTTTTATGTTTTTCTACCAAGAAACCTAAACAAGCTTGGGTCTATATTGTGAGGGGAGATCTGTGCAAAAAGATTAAGATAGATGAAGTTGTATGTACGTTCCAATCCTGTGCCTATGTTCCCAGTTTGATCTCCATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

19.15

Weight (kDa)

9.14

Isoelectric Point (pI)

30.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 22 - 167 3e-33 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 26
AcsI RAATTY 1 cut(s) 6
AfaI GTAC 4 cut(s) 13, 124, 306, 460
AluBI AGCT 3 cut(s) 22, 360, 398
AluI AGCT 3 cut(s) 22, 360, 398
Alw26I GTCTC 2 cut(s) 71, 286
ApoI RAATTY 1 cut(s) 6
Asp700I GAANNNNTTC 1 cut(s) 359
AsuHPI GGTGA 1 cut(s) 226
BccI CCATC 2 cut(s) 169, 239
BciVI GTATCC 1 cut(s) 149
BcoDI GTCTC 2 cut(s) 71, 286
BfuI GTATCC 1 cut(s) 149
BglII AGATCT 1 cut(s) 421
BmcAI AGTACT 1 cut(s) 124
BmrI ACTGGG 1 cut(s) 480
BmuI ACTGGG 1 cut(s) 480
BsaJI CCNNGG 1 cut(s) 300
Bse1I ACTGG 3 cut(s) 19, 42, 486
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 50, 247
BseNI ACTGG 3 cut(s) 19, 42, 486
BsmAI GTCTC 2 cut(s) 71, 286
Bsp143I GATC 3 cut(s) 160, 421, 492
Bsp19I CCATGG 1 cut(s) 300
BspHI TCATGA 1 cut(s) 273
BspQI GCTCTTC 1 cut(s) 350
BsrI ACTGG 3 cut(s) 19, 42, 486
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 160, 421, 492
BssT1I CCWWGG 1 cut(s) 300
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 350
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 50, 247
BstKTI GATC 3 cut(s) 163, 424, 495
BstMAI GTCTC 2 cut(s) 71, 286
BstMBI GATC 3 cut(s) 160, 421, 492
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuI GTATCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 50, 247
BtsIMutI CAGTG 1 cut(s) 177
CciI TCATGA 1 cut(s) 273
Csp6I GTAC 4 cut(s) 12, 123, 305, 459
CviAII CATG 3 cut(s) 105, 274, 301
CviJI RGCY 4 cut(s) 22, 61, 360, 398
CviKI_1 RGCY 4 cut(s) 22, 61, 360, 398
CviQI GTAC 4 cut(s) 12, 123, 305, 459
DpnI GATC 3 cut(s) 162, 423, 494
DpnII GATC 3 cut(s) 160, 421, 492
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 108, 277, 304
FatI CATG 3 cut(s) 104, 273, 300
FokI GGATG 2 cut(s) 37, 254
Hin1II CATG 3 cut(s) 108, 277, 304
HindIII AAGCTT 1 cut(s) 396
HphI GGTGA 1 cut(s) 226
Hpy188III TCNNGA 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 280
HpyCH4IV ACGT 1 cut(s) 461
HpyCH4V TGCA 2 cut(s) 186, 429
HpySE526I ACGT 1 cut(s) 461
Hsp92II CATG 3 cut(s) 108, 277, 304
Kzo9I GATC 3 cut(s) 160, 421, 492
LguI GCTCTTC 1 cut(s) 350
LpnPI CCDG 4 cut(s) 23, 336, 484, 499
MaeII ACGT 1 cut(s) 461
MaeIII GTNAC 2 cut(s) 214, 326
MalI GATC 3 cut(s) 162, 423, 494
MboI GATC 3 cut(s) 160, 421, 492
MboII GAAGA 2 cut(s) 127, 367
MflI RGATCY 1 cut(s) 421
MluCI AATT 4 cut(s) 6, 27, 228, 316
MnlI CCTC 2 cut(s) 152, 408
MroXI GAANNNNTTC 1 cut(s) 359
MseI TTAA 3 cut(s) 83, 267, 438
MslI CAYNNNNRTG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 300
NdeII GATC 3 cut(s) 160, 421, 492
NlaIII CATG 3 cut(s) 108, 277, 304
NmuCI GTSAC 1 cut(s) 214
PagI TCATGA 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 350
PdmI GAANNNNTTC 1 cut(s) 359
PsiI TTATAA 1 cut(s) 26
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 4 cut(s) 13, 124, 306, 460
RsaNI GTAC 4 cut(s) 12, 123, 305, 459
RseI CAYNNNNRTG 1 cut(s) 55
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 3 cut(s) 83, 267, 438
Sau3AI GATC 3 cut(s) 160, 421, 492
ScaI AGTACT 1 cut(s) 124
SetI ASST 6 cut(s) 24, 292, 362, 391, 400, 464
SmiMI CAYNNNNRTG 1 cut(s) 55
Sse9I AATT 4 cut(s) 6, 27, 228, 316
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 280
TaiI ACGT 1 cut(s) 464
TaqI TCGA 2 cut(s) 63, 336
TasI AATT 4 cut(s) 6, 27, 228, 316
TatI WGTACW 2 cut(s) 11, 122
Tru1I TTAA 3 cut(s) 83, 267, 438
Tru9I TTAA 3 cut(s) 83, 267, 438
TscAI CASTG 1 cut(s) 177
TseFI GTSAC 1 cut(s) 214
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 39, 262, 462
TspRI CASTG 1 cut(s) 177
XapI RAATTY 1 cut(s) 6
XmnI GAANNNNTTC 1 cut(s) 359
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.