AT5G41490

cytochrome P450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Forward (+)
16600445 .. 16601608
1164 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41490.1

Sequence Viewer

Length: 1164 bp
ATGGCGACAATGATCACCAATCTTCGAAGGGATTTGATAGAGGAGATTATATCTAGGGTTCCCTTGAGATCTATGAAAGCAGTAAGATTAACTTGCAAAAGTTGGAATAATATATCCAAAAGTGAGATCTTCACGAAGATGCAGATTGATAAAGCAACAACTAGAGAAGGGAAGACTATGATGATATCGGTGATGCCTCACAATCTTTCTTTAATGAGCGTCGCCGTCGACGACGTTGATCCATCCGTAGAGTTTAAAGGTCAGCTTAGTTTTCTTTGTAATCAAGTCAGTATACATAAAGTTATCCATTGTGAGGGTTTGTTGTTATGCTTCTTGAAAGACCATACTAGGGTTGTGGTTTGGAATCCGTATTCCGGGCAAACAAGGTGGGTCAAACTCAGATATCCCCACCCTCCAAGTCCAAGCAAATGGGATTGGTTCAGATATGCCCTTGGATACGAGGATAAAGGATCTTGTCGTAGCGTTAAATTCTTAAGGTTTTTAGATTATTTACCTGAAGAACCAGAAAACCAAAATGTTTGCTATGAAATCTATGATTTTGACTCTGATTTATGGACAACTCTTGATGTCACTTCACACTCGTGGATATGTTATTCTAGCTGTGGCGTGTTTCTCAAGGGAAACGCTTACTGGCCTGTTGTAAAAAGTAGCTCAGAAGCTAACATCGATCACATAATCTATTTTGACTTTACAAGAGAGAGTTTCGGGCCGCCTCTACCTTTACCGTTTGGCGCTACAGATCGTGGATATTCATATGTGAATTTATCTTGTGTTAAAGAAGAGAAGCTTGCAGCTTTTTTTCAGCACTACATTTCATATAAATATGAATTTGAGATATGGGTTACGACTAAGATTGAGGCCGAAATGGTGTCGTGGAGCAAATTCTTGAGAATGGATTTGGGACCTAATATAGATATTCCAATTACTTTCTTCATTGACGAGGAGAAGAAAGTTTTCATGGGTTTTGAGCATAGAGAATATCCCAAGAGATTTATTAACATCATCGGAGAGGCTAAATATTTAAGAAAATTGGATCTCCAAGTACCTCAAGGCCAATACTGTTGCCCACCTTTGTGCTCTTATGTTCCAAGTTCGATCCAAATCAAGAAACCTGCACTGAGGCAAAAAGATAGAGCAAAATAG

Protein Analysis

387

Amino Acids

45.2

Weight (kDa)

8.32

Isoelectric Point (pI)

51.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 45 3.8e-06 F-box domain
FBA_1 PF07734 60 - 375 2e-102 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1141
AccI GTMKAC 2 cut(s) 228, 292
AciI CCGC 1 cut(s) 731
AclWI GGATC 4 cut(s) 233, 478, 1062, 1111
AcsI RAATTY 4 cut(s) 488, 781, 848, 902
AcuI CTGAAG 1 cut(s) 537
AfaI GTAC 1 cut(s) 1065
AfiI CCNNNNNNNGG 3 cut(s) 313, 349, 374
AflII CTTAAG 1 cut(s) 493
AgsI TTSAA 1 cut(s) 337
AleI CACNNNNGTG 2 cut(s) 601, 1093
AluBI AGCT 6 cut(s) 265, 621, 672, 680, 808, 815
AluI AGCT 6 cut(s) 265, 621, 672, 680, 808, 815
Alw21I GWGCWC 1 cut(s) 1100
AlwI GGATC 4 cut(s) 233, 478, 1062, 1111
AoxI GGCC 4 cut(s) 653, 728, 879, 1072
ApeKI GCWGC 1 cut(s) 812
ApoI RAATTY 4 cut(s) 488, 781, 848, 902
Asp700I GAANNNNTTC 1 cut(s) 974
AspLEI GCGC 1 cut(s) 755
AspS9I GGNCC 2 cut(s) 728, 923
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 2 cut(s) 7, 202
AsuII TTCGAA 1 cut(s) 25
AvaII GGWCC 1 cut(s) 923
BauI CACGAG 1 cut(s) 601
BbsI GAAGAC 1 cut(s) 179
Bbv12I GWGCWC 1 cut(s) 1100
BbvI GCAGC 1 cut(s) 824
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 209
BciVI GTATCC 1 cut(s) 449
BclI TGATCA 1 cut(s) 12
BcnI CCSGG 1 cut(s) 376
BfaI CTAG 4 cut(s) 54, 162, 348, 618
BfmI CTRYAG 1 cut(s) 756
BfoI RGCGCY 1 cut(s) 756
BfrI CTTAAG 1 cut(s) 493
BfuAI ACCTGC 1 cut(s) 1141
BfuI GTATCC 1 cut(s) 449
BglII AGATCT 2 cut(s) 68, 126
BisI GCNGC 2 cut(s) 731, 813
BlsI GCNGC 2 cut(s) 732, 814
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 923
BmgT120I GGNCC 2 cut(s) 728, 923
BmiI GGNNCC 2 cut(s) 60, 924
BmrFI CCNGG 1 cut(s) 376
BmsI GCATC 2 cut(s) 129, 183
BpiI GAAGAC 1 cut(s) 179
Bpu14I TTCGAA 1 cut(s) 25
BpuEI CTTGAG 4 cut(s) 85, 620, 928, 1053
BpuMI CCSGG 1 cut(s) 376
Bsa29I ATCGAT 1 cut(s) 687
BsaBI GATNNNNATC 1 cut(s) 1121
BsaJI CCNNGG 1 cut(s) 451
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 349, 374
Bse1I ACTGG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 1121
BseCI ATCGAT 1 cut(s) 687
BseDI CCNNGG 1 cut(s) 451
BseGI GGATG 1 cut(s) 242
BseJI GATNNNNATC 1 cut(s) 1121
BseLI CCNNNNNNNGG 3 cut(s) 313, 349, 374
BseMII CTCAG 3 cut(s) 412, 687, 1130
BseNI ACTGG 1 cut(s) 656
BseRI GAGGAG 2 cut(s) 56, 977
BseXI GCAGC 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 1119
BshFI GGCC 4 cut(s) 655, 730, 881, 1074
BshVI ATCGAT 1 cut(s) 687
BsiHKAI GWGCWC 1 cut(s) 1100
BsiSI CCGG 1 cut(s) 375
BslFI GGGAC 1 cut(s) 936
BslI CCNNNNNNNGG 3 cut(s) 313, 349, 374
BsmFI GGGAC 1 cut(s) 936
BsnI GGCC 4 cut(s) 655, 730, 881, 1074
Bsp119I TTCGAA 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 1100
Bsp143I GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
BspACI CCGC 1 cut(s) 731
BspANI GGCC 4 cut(s) 655, 730, 881, 1074
BspCNI CTCAG 3 cut(s) 411, 686, 1131
BspDI ATCGAT 1 cut(s) 687
BspLI GGNNCC 2 cut(s) 60, 924
BspMI ACCTGC 1 cut(s) 1141
BspPI GGATC 4 cut(s) 233, 478, 1062, 1111
BspT104I TTCGAA 1 cut(s) 25
BspTI CTTAAG 1 cut(s) 493
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 1 cut(s) 451
BssMI GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
BssNAI GTATAC 1 cut(s) 293
BssSI CACGAG 1 cut(s) 601
BssT1I CCWWGG 1 cut(s) 451
Bst1107I GTATAC 1 cut(s) 293
Bst2BI CACGAG 1 cut(s) 601
Bst4CI ACNGT 2 cut(s) 747, 1082
Bst6I CTCTTC 1 cut(s) 795
BstAFI CTTAAG 1 cut(s) 493
BstBI TTCGAA 1 cut(s) 25
BstC8I GCNNGC 1 cut(s) 810
BstDEI CTNAG 5 cut(s) 266, 398, 673, 870, 1139
BstF5I GGATG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 1 cut(s) 755
BstKTI GATC 9 cut(s) 15, 71, 129, 241, 473, 691, 763, 1057, 1119
BstMBI GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
BstSCI CCNGG 1 cut(s) 374
BstSFI CTRYAG 1 cut(s) 756
BstV1I GCAGC 1 cut(s) 824
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 4 cut(s) 68, 126, 470, 1054
BstXI CCANNNNNNTGG 1 cut(s) 429
BstYI RGATCY 4 cut(s) 68, 126, 470, 1054
BstZ17I GTATAC 1 cut(s) 293
Bsu15I ATCGAT 1 cut(s) 687
BsuI GTATCC 1 cut(s) 449
BsuRI GGCC 4 cut(s) 655, 730, 881, 1074
BsuTUI ATCGAT 1 cut(s) 687
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 1136
BveI ACCTGC 1 cut(s) 1141
Cac8I GCNNGC 1 cut(s) 810
CfoI GCGC 1 cut(s) 755
Cfr13I GGNCC 2 cut(s) 728, 923
ClaI ATCGAT 1 cut(s) 687
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 1064
CspCI CAANNNNNGTGG 2 cut(s) 368, 403
CviAII CATG 1 cut(s) 979
CviQI GTAC 1 cut(s) 1064
DdeI CTNAG 5 cut(s) 266, 398, 673, 870, 1139
DpnI GATC 9 cut(s) 14, 70, 128, 240, 472, 690, 762, 1056, 1118
DpnII GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco130I CCWWGG 1 cut(s) 451
Eco32I GATATC 2 cut(s) 186, 404
Eco47I GGWCC 1 cut(s) 923
Eco57I CTGAAG 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 923
EcoRV GATATC 2 cut(s) 186, 404
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 1 cut(s) 982
FalI AAGNNNNNCTT 6 cut(s) 76, 108, 249, 281, 792, 824
FaqI GGGAC 1 cut(s) 936
FatI CATG 1 cut(s) 978
FauNDI CATATG 1 cut(s) 775
FbaI TGATCA 1 cut(s) 12
FblI GTMKAC 2 cut(s) 228, 292
Fnu4HI GCNGC 2 cut(s) 731, 813
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 2 cut(s) 731, 813
FspBI CTAG 4 cut(s) 54, 162, 348, 618
GlaI GCGC 1 cut(s) 754
GluI GCNGC 2 cut(s) 731, 813
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 4 cut(s) 655, 730, 881, 1074
HapII CCGG 1 cut(s) 375
HgaI GACGC 1 cut(s) 208
HhaI GCGC 1 cut(s) 755
Hin1II CATG 1 cut(s) 982
Hin6I GCGC 1 cut(s) 753
HinP1I GCGC 1 cut(s) 753
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 806
HinfI GANTC 2 cut(s) 364, 563
HpaII CCGG 1 cut(s) 375
HphI GGTGA 2 cut(s) 7, 202
Hpy166II GTNNAC 2 cut(s) 229, 293
Hpy188I TCNGA 5 cut(s) 401, 443, 568, 676, 1028
Hpy188III TCNNGA 5 cut(s) 133, 334, 584, 907, 1126
Hpy8I GTNNAC 2 cut(s) 229, 293
Hpy99I CGWCG 4 cut(s) 224, 230, 233, 236
HpyAV CCTTC 2 cut(s) 21, 161
HpyCH4III ACNGT 2 cut(s) 747, 1082
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 4 cut(s) 96, 142, 812, 1136
HpyF3I CTNAG 5 cut(s) 266, 398, 673, 870, 1139
HpySE526I ACGT 1 cut(s) 234
Hsp92II CATG 1 cut(s) 982
HspAI GCGC 1 cut(s) 753
Ksp22I TGATCA 1 cut(s) 12
Kzo9I GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
LmnI GCTCC 1 cut(s) 897
LpnPI CCDG 6 cut(s) 388, 528, 537, 637, 669, 1146
Lsp1109I GCAGC 1 cut(s) 824
LweI GCATC 2 cut(s) 129, 183
MaeI CTAG 4 cut(s) 54, 162, 348, 618
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 589, 862
MalI GATC 9 cut(s) 14, 70, 128, 240, 472, 690, 762, 1056, 1118
MboI GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
MboII GAAGA 8 cut(s) 14, 121, 148, 184, 530, 812, 943, 979
MflI RGATCY 4 cut(s) 68, 126, 470, 1054
MhlI GDGCHC 1 cut(s) 1100
MluCI AATT 6 cut(s) 488, 781, 848, 902, 942, 1049
MlyI GAGTC 1 cut(s) 557
MmeI TCCRAC 1 cut(s) 83
MroXI GAANNNNTTC 1 cut(s) 974
MseI TTAA 8 cut(s) 89, 212, 255, 486, 494, 795, 1017, 1043
MslI CAYNNNNRTG 3 cut(s) 137, 601, 1093
MspCI CTTAAG 1 cut(s) 493
MspI CCGG 1 cut(s) 375
MspR9I CCNGG 1 cut(s) 376
NciI CCSGG 1 cut(s) 376
NdeI CATATG 1 cut(s) 775
NdeII GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
NlaIII CATG 1 cut(s) 982
NlaIV GGNNCC 2 cut(s) 60, 924
NmuCI GTSAC 1 cut(s) 589
NspV TTCGAA 1 cut(s) 25
OliI CACNNNNGTG 2 cut(s) 601, 1093
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 974
PfeI GAWTC 1 cut(s) 364
PkrI GCNGC 2 cut(s) 732, 814
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
PpuMI RGGWCCY 1 cut(s) 923
Psp5II RGGWCCY 1 cut(s) 923
PspN4I GGNNCC 2 cut(s) 60, 924
PspPI GGNCC 2 cut(s) 728, 923
PspPPI RGGWCCY 1 cut(s) 923
PsuI RGATCY 4 cut(s) 68, 126, 470, 1054
RsaI GTAC 1 cut(s) 1065
RsaNI GTAC 1 cut(s) 1064
RseI CAYNNNNRTG 3 cut(s) 137, 601, 1093
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 8 cut(s) 89, 212, 255, 486, 494, 795, 1017, 1043
SatI GCNGC 2 cut(s) 731, 813
Sau3AI GATC 9 cut(s) 12, 68, 126, 238, 470, 688, 760, 1054, 1116
Sau96I GGNCC 2 cut(s) 728, 923
SchI GAGTC 1 cut(s) 557
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 1100
SfaNI GCATC 2 cut(s) 129, 183
SfcI CTRYAG 1 cut(s) 756
SfuI TTCGAA 1 cut(s) 25
SgrDI CGTCGACG 1 cut(s) 227
SinI GGWCC 1 cut(s) 923
SmiMI CAYNNNNRTG 3 cut(s) 137, 601, 1093
SmlI CTYRAG 5 cut(s) 64, 493, 635, 907, 1068
SmoI CTYRAG 5 cut(s) 64, 493, 635, 907, 1068
Sse9I AATT 6 cut(s) 488, 781, 848, 902, 942, 1049
SsiI CCGC 1 cut(s) 731
SspI AATATT 1 cut(s) 1040
SspMI CTAG 4 cut(s) 54, 162, 348, 618
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 747, 1082
TaiI ACGT 1 cut(s) 237
TaqI TCGA 4 cut(s) 25, 228, 687, 1115
TasI AATT 6 cut(s) 488, 781, 848, 902, 942, 1049
TauI GCSGC 1 cut(s) 733
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 8 cut(s) 89, 212, 255, 486, 494, 795, 1017, 1043
Tru9I TTAA 8 cut(s) 89, 212, 255, 486, 494, 795, 1017, 1043
TscAI CASTG 1 cut(s) 1143
TseFI GTSAC 1 cut(s) 589
TseI GCWGC 1 cut(s) 812
Tsp45I GTSAC 1 cut(s) 589
TspDTI ATGAA 7 cut(s) 89, 561, 762, 825, 861, 943, 967
TspGWI ACGGA 2 cut(s) 235, 357
TspRI CASTG 1 cut(s) 1143
Vha464I CTTAAG 1 cut(s) 493
VpaK11BI GGWCC 1 cut(s) 923
XapI RAATTY 4 cut(s) 488, 781, 848, 902
XmiI GTMKAC 2 cut(s) 228, 292
XmnI GAANNNNTTC 1 cut(s) 974
XspI CTAG 4 cut(s) 54, 162, 348, 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.