AT3G16820

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Reverse (-)
5728016 .. 5729174
1159 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G16820.1

Sequence Viewer

Length: 942 bp
ATGGCGATTTCAGATCTTCCTAGGGATTTGGTAGAGGAGGTGCTCTCTAGAGTTCCGGTGACATCTCTGAGAACAGTGCGATCTACTTGCAAAAAATGGAACATTATATCCAAAGACGAGAGCTTTACAAAGAAGCACGTTGGTCAAGCAAACGCAGCAGCAAGGGAAAGTGAGTTTCAGGTGGTAATAATGACGGAATACAAAGTTTATCTAATGAGCGTCAATCTCCATGGCATTCAAAACAATGTTGATCCATCTATAGAGTTTAAATGTAAACTTATCAGCCTAGATGATTCAGATCGAATAGTCGATTTTCACCCAGTTTATGAGACTGAAATTTACAACTTTCACTCTGATTCATGGAAGAATATTGTTGATTCCACTCCTGAAGGGGATATGCAATATTTTAAACAAGGCGTGTCTCTTAAGGGAAATACTTACTGGTTTGCTAGAAAGTATGTGATCTATGAAGGAGGACAAGAAGCATGGGTTAGTTTCTTGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGACTTACTCTGCCTTTTGACTATTCTACAAAGGAGAGTGTGAGTCTCTTGAGTGCTAGAGAAGAGCAGCTTGTGCTGTTATATCACCCCTGGTTTACAATGATGATGGAGATATGGGTTAGTAATAAGATTGAGCTCAATGCGGTGTCATGGATAAAGTTCTTAGAGGTTAACATGATAACATTCCCTCATTATCGGTTTAGTTTTCACCATGTGAGTTTCTTCATTGACAAGAAGAATAAGGTTGTAGTGGTTTTGGATAAAGACAAAGAGACGCGTTCTCGCAACTTAGGATATTTCATTGGAGATGATGGATATTTCAAAGAAGTGGAACTGGGAGGATCTAGAGACAGAAATGGTTATCCATTTGTGTTCTCTTATGTTCCAAGTTCAGTGCAATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

313

Amino Acids

36.59

Weight (kDa)

5.94

Isoelectric Point (pI)

33.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 44 3.7e-10 F-box domain
F-box-like PF12937 3 - 42 1.4e-06 F-box-like
FBA_1 PF07734 109 - 312 1.4e-62 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 538, 814
AciI CCGC 2 cut(s) 536, 680
AclWI GGATC 2 cut(s) 245, 886
AcsI RAATTY 1 cut(s) 336
AcuI CTGAAG 1 cut(s) 408
AdeI CACNNNGTG 1 cut(s) 751
AflII CTTAAG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 812
AgsI TTSAA 2 cut(s) 239, 859
AjnI CCWGG 1 cut(s) 626
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 3 cut(s) 123, 607, 673
AluI AGCT 3 cut(s) 123, 607, 673
Alw21I GWGCWC 2 cut(s) 45, 675
Alw26I GTCTC 5 cut(s) 323, 426, 587, 803, 879
AlwI GGATC 2 cut(s) 245, 886
ApeKI GCWGC 3 cut(s) 155, 158, 604
ApoI RAATTY 1 cut(s) 336
AspA2I CCTAGG 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 4 cut(s) 70, 308, 614, 737
AvaII GGWCC 1 cut(s) 533
AvrII CCTAGG 1 cut(s) 20
BanII GRGCYC 1 cut(s) 675
Bbv12I GWGCWC 2 cut(s) 45, 675
BbvI GCAGC 3 cut(s) 167, 170, 616
BccI CCATC 3 cut(s) 262, 637, 842
BcgI CGANNNNNNTGC 2 cut(s) 69, 103
BciT130I CCWGG 1 cut(s) 628
BcoDI GTCTC 5 cut(s) 323, 426, 587, 803, 879
BfaI CTAG 6 cut(s) 21, 48, 287, 450, 594, 882
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 425
BglII AGATCT 1 cut(s) 13
BisI GCNGC 3 cut(s) 156, 159, 605
BlnI CCTAGG 1 cut(s) 20
BlsI GCNGC 3 cut(s) 157, 160, 606
Bme1390I CCNGG 1 cut(s) 628
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 533
BmrFI CCNGG 1 cut(s) 628
BmrI ACTGGG 2 cut(s) 314, 881
BmuI ACTGGG 2 cut(s) 314, 881
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 297
BsaJI CCNNGG 3 cut(s) 20, 229, 626
BsaWI WCCGGW 1 cut(s) 55
Bse1I ACTGG 3 cut(s) 320, 446, 876
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 1 cut(s) 628
BseDI CCNNGG 3 cut(s) 20, 229, 626
BseJI GATNNNNATC 1 cut(s) 297
BseMII CTCAG 1 cut(s) 59
BseNI ACTGG 3 cut(s) 320, 446, 876
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 3 cut(s) 167, 170, 616
Bsh1236I CGCG 2 cut(s) 538, 814
BsiHKAI GWGCWC 2 cut(s) 45, 675
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 5 cut(s) 323, 426, 587, 803, 879
BsmBI CGTCTC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 45, 675
Bsp143I GATC 6 cut(s) 13, 80, 250, 298, 462, 878
Bsp19I CCATGG 1 cut(s) 229
BspACI CCGC 2 cut(s) 536, 680
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 2 cut(s) 538, 814
BspPI GGATC 2 cut(s) 245, 886
BspQI GCTCTTC 1 cut(s) 594
BspTI CTTAAG 1 cut(s) 425
BsrI ACTGG 3 cut(s) 320, 446, 876
BssECI CCNNGG 3 cut(s) 20, 229, 626
BssMI GATC 6 cut(s) 13, 80, 250, 298, 462, 878
BssT1I CCWWGG 2 cut(s) 20, 229
Bst2UI CCWGG 1 cut(s) 628
Bst4CI ACNGT 1 cut(s) 76
Bst6I CTCTTC 1 cut(s) 594
BstAFI CTTAAG 1 cut(s) 425
BstAPI GCANNNNNTGC 1 cut(s) 610
BstDEI CTNAG 3 cut(s) 68, 700, 826
BstDSI CCRYGG 1 cut(s) 229
BstFNI CGCG 2 cut(s) 538, 814
BstKTI GATC 6 cut(s) 16, 83, 253, 301, 465, 881
BstMAI GTCTC 5 cut(s) 323, 426, 587, 803, 879
BstMBI GATC 6 cut(s) 13, 80, 250, 298, 462, 878
BstMWI GCNNNNNNNGC 2 cut(s) 155, 610
BstNI CCWGG 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 626
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 2 cut(s) 538, 814
BstV1I GCAGC 3 cut(s) 167, 170, 616
BstX2I RGATCY 2 cut(s) 13, 878
BstYI RGATCY 2 cut(s) 13, 878
BtgI CCRYGG 1 cut(s) 229
BtsIMutI CAGTG 2 cut(s) 81, 936
Cfr13I GGNCC 1 cut(s) 533
CseI GACGC 2 cut(s) 208, 820
CviAII CATG 6 cut(s) 230, 360, 486, 687, 712, 749
CviJI RGCY 4 cut(s) 123, 285, 607, 673
CviKI_1 RGCY 4 cut(s) 123, 285, 607, 673
DdeI CTNAG 3 cut(s) 68, 700, 826
DpnI GATC 6 cut(s) 15, 82, 252, 300, 464, 880
DpnII GATC 6 cut(s) 13, 80, 250, 298, 462, 878
DraI TTTAAA 2 cut(s) 268, 409
DraIII CACNNNGTG 1 cut(s) 751
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Ecl136II GAGCTC 1 cut(s) 673
Eco130I CCWWGG 2 cut(s) 20, 229
Eco24I GRGCYC 1 cut(s) 675
Eco47I GGWCC 1 cut(s) 533
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 1 cut(s) 408
EcoICRI GAGCTC 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 626
EcoT14I CCWWGG 2 cut(s) 20, 229
EcoT38I GRGCYC 1 cut(s) 675
ErhI CCWWGG 2 cut(s) 20, 229
Esp3I CGTCTC 1 cut(s) 803
FaeI CATG 6 cut(s) 233, 363, 489, 690, 715, 752
FalI AAGNNNNNCTT 2 cut(s) 591, 623
FatI CATG 6 cut(s) 229, 359, 485, 686, 711, 748
Fnu4HI GCNGC 3 cut(s) 156, 159, 605
FriOI GRGCYC 1 cut(s) 675
Fsp4HI GCNGC 3 cut(s) 156, 159, 605
FspBI CTAG 6 cut(s) 21, 48, 287, 450, 594, 882
GluI GCNGC 3 cut(s) 156, 159, 605
HapII CCGG 1 cut(s) 56
HgaI GACGC 2 cut(s) 208, 820
Hin1II CATG 6 cut(s) 233, 363, 489, 690, 715, 752
HincII GTYRAC 1 cut(s) 709
HindII GTYRAC 1 cut(s) 709
HinfI GANTC 4 cut(s) 293, 356, 377, 580
HpaI GTTAAC 1 cut(s) 709
HpaII CCGG 1 cut(s) 56
HphI GGTGA 4 cut(s) 70, 308, 614, 737
Hpy166II GTNNAC 3 cut(s) 275, 633, 709
Hpy188I TCNGA 4 cut(s) 13, 69, 298, 355
Hpy188III TCNNGA 5 cut(s) 48, 386, 499, 586, 882
Hpy8I GTNNAC 3 cut(s) 275, 633, 709
HpyAV CCTTC 2 cut(s) 383, 464
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 3 cut(s) 90, 400, 934
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 610
HpyF3I CTNAG 3 cut(s) 68, 700, 826
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 6 cut(s) 233, 363, 489, 690, 715, 752
KspAI GTTAAC 1 cut(s) 709
Kzo9I GATC 6 cut(s) 13, 80, 250, 298, 462, 878
LguI GCTCTTC 1 cut(s) 594
LpnPI CCDG 8 cut(s) 69, 164, 333, 399, 427, 613, 640, 857
Lsp1109I GCAGC 3 cut(s) 167, 170, 616
MaeI CTAG 6 cut(s) 21, 48, 287, 450, 594, 882
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 58
MalI GATC 6 cut(s) 15, 82, 252, 300, 464, 880
MboI GATC 6 cut(s) 13, 80, 250, 298, 462, 878
MboII GAAGA 5 cut(s) 8, 376, 611, 751, 784
MflI RGATCY 2 cut(s) 13, 878
MhlI GDGCHC 2 cut(s) 45, 675
MluCI AATT 2 cut(s) 336, 935
MluI ACGCGT 1 cut(s) 812
MlyI GAGTC 1 cut(s) 589
MnlI CCTC 6 cut(s) 28, 31, 467, 697, 735, 869
MseI TTAA 4 cut(s) 267, 408, 426, 708
MspCI CTTAAG 1 cut(s) 425
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 1 cut(s) 628
Mva1269I GAATGC 1 cut(s) 234
MvaI CCWGG 1 cut(s) 628
MvnI CGCG 2 cut(s) 538, 814
MwoI GCNNNNNNNGC 2 cut(s) 155, 610
NcoI CCATGG 1 cut(s) 229
NdeII GATC 6 cut(s) 13, 80, 250, 298, 462, 878
NlaIII CATG 6 cut(s) 233, 363, 489, 690, 715, 752
NmuCI GTSAC 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 594
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 293, 356, 377
PkrI GCNGC 3 cut(s) 157, 160, 606
PleI GAGTC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 675
Psp6I CCWGG 1 cut(s) 626
PspGI CCWGG 1 cut(s) 626
PspPI GGNCC 1 cut(s) 533
PsuI RGATCY 2 cut(s) 13, 878
SacI GAGCTC 1 cut(s) 675
SapI GCTCTTC 1 cut(s) 594
SaqAI TTAA 4 cut(s) 267, 408, 426, 708
SatI GCNGC 3 cut(s) 156, 159, 605
Sau3AI GATC 6 cut(s) 13, 80, 250, 298, 462, 878
Sau96I GGNCC 1 cut(s) 533
SchI GAGTC 1 cut(s) 589
ScrFI CCNGG 1 cut(s) 628
SduI GDGCHC 2 cut(s) 45, 675
SetI ASST 8 cut(s) 42, 125, 141, 183, 609, 675, 708, 783
SfcI CTRYAG 1 cut(s) 258
SinI GGWCC 1 cut(s) 533
SmlI CTYRAG 2 cut(s) 425, 586
SmoI CTYRAG 2 cut(s) 425, 586
Sse9I AATT 2 cut(s) 336, 935
SsiI CCGC 2 cut(s) 536, 680
SspI AATATT 2 cut(s) 370, 404
SspMI CTAG 6 cut(s) 21, 48, 287, 450, 594, 882
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 1 cut(s) 626
StyI CCWWGG 2 cut(s) 20, 229
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 301, 309
TasI AATT 2 cut(s) 336, 935
TfiI GAWTC 3 cut(s) 293, 356, 377
Tru1I TTAA 4 cut(s) 267, 408, 426, 708
Tru9I TTAA 4 cut(s) 267, 408, 426, 708
TscAI CASTG 2 cut(s) 81, 936
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 3 cut(s) 155, 158, 604
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 4 cut(s) 348, 483, 751, 826
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 2 cut(s) 81, 936
Vha464I CTTAAG 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 1 cut(s) 336
XbaI TCTAGA 2 cut(s) 47, 881
XmaJI CCTAGG 1 cut(s) 20
XspI CTAG 6 cut(s) 21, 48, 287, 450, 594, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.