AT2G18780

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Reverse (-)
8136740 .. 8138142
1403 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18780.1

Sequence Viewer

Length: 1113 bp
ATGCAAAAACAATCAACGACGATGCTCTCGGATCTTCCAAAGGATGTGGCGGAGGAGGTGCTCTCGAAGTTTCCAGTGACATCTCTGAGAAGAGTACGATTCACATGCAAAAAGTTGAACACTTTATCCAAAGATATGTCTTTTACAAGGAAGCACATCGATAAAGAAGAAGCAAAGAAGAAGCAGAGTAAGGAGTTTCATGTTGTGATGATGCTCGATTTTAGGGTTTCTTTATTCAGTCTCAATCTACTAAACCCTAATCCCATAGAGCGTTTAGGTCAACTTGTTAGCTTAGACGGTGGTGCACAAGTCGACATATCTAACATTTTTCACTGCGAGGGTTTCTTGTTATGCACCACTAAAGACATATCTAGGGTTGTTGTTTGGAACCCTTGTGTTGGGCAAACAATTTGGATCAAACCCAGAAACTCTTTCAACAAATGGGATAGGTATGCTCTGGGCTACGATGTGATGAAGAATCATAAAGTTTTGAGATTTGTGGATGACGGTGAGTATGGAAGGAGACACTTACTTTGTGAGTTTGAAATCTACAGTTTTGAGTCTGATTCATGGGAGGTTCTTGATGTGAATCCGGATTGGGAGATAGATTTTGTTCACCGTGGTTTGTCTATCGATGGAAACAGTTACTGGTTTGCACGAGACAAGGTTGTTCCATATGGAGGACAAGATCCTTCTTATTTCTTGCTGTGTTTTGATTTCACAACGGAGAGATTTAGACCGCCTCTGCCTCTGCCATTTCAGCCTTACTTTGGTGATACTGTGGCTCTATCTAGCGTTGGGGATAACCAGATTGCGGTCTTGTGTCAGCGGTCTTCTTCGCCGTATACCTTGAAGATATGGATTAGCAGCAAGGTTGAGCCCAATGCAGTGTCGTGGAACAAGTTGTTCTTAAAGGTTGACATGAAACCTCTCACTGGTAATTCCTTCTCTTATTCGGGTGGGAGTTTCTTTGTTGACGAGGAGAAGAAGATGGCTGTGGTTCTTGATAAAAACATAGGTGGTGGATTTGACCCGACTCGCAACATAGCTTACATCATTGGAAAGGAGGGCTACTTCAAGAAAGTTGATCTTGGCGAATCTAGGCACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

370

Amino Acids

42.52

Weight (kDa)

8.04

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 50 2.6e-08 F-box domain
FBA_1 PF07734 68 - 368 6e-94 F-box associated beta propeller domain
FBA_3 PF08268 115 - 246 2.5e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1104
AccI GTMKAC 2 cut(s) 312, 845
AccIII TCCGGA 1 cut(s) 592
AciI CCGC 4 cut(s) 50, 740, 815, 829
AclWI GGATC 3 cut(s) 39, 422, 683
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 5 cut(s) 398, 680, 770, 814, 935
AgsI TTSAA 5 cut(s) 118, 436, 545, 853, 1078
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 291, 1049
AluI AGCT 2 cut(s) 291, 1049
Alw21I GWGCWC 2 cut(s) 63, 307
Alw26I GTCTC 3 cut(s) 245, 517, 654
Alw44I GTGCAC 1 cut(s) 303
AlwI GGATC 3 cut(s) 39, 422, 683
AlwNI CAGNNNCTG 1 cut(s) 648
Aor13HI TCCGGA 1 cut(s) 592
ApaLI GTGCAC 1 cut(s) 303
ApeKI GCWGC 1 cut(s) 867
ArsI GACNNNNNNTTYG 2 cut(s) 516, 548
AsuHPI GGTGA 3 cut(s) 521, 608, 785
BaeGI GKGCMC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 1104
BanII GRGCYC 1 cut(s) 882
BauI CACGAG 1 cut(s) 657
BbsI GAAGAC 1 cut(s) 825
Bbv12I GWGCWC 2 cut(s) 63, 307
BbvI GCAGC 1 cut(s) 879
BccI CCATC 2 cut(s) 629, 985
BceAI ACGGC 1 cut(s) 826
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BcoDI GTCTC 3 cut(s) 245, 517, 654
BfaI CTAG 4 cut(s) 372, 792, 1101, 1111
BfmI CTRYAG 1 cut(s) 550
BisI GCNGC 1 cut(s) 868
BlsI GCNGC 1 cut(s) 869
BmiI GGNNCC 2 cut(s) 389, 1106
BmsI GCATC 2 cut(s) 12, 201
BpiI GAAGAC 1 cut(s) 825
BplI GAGNNNNNCTC 2 cut(s) 47, 79
Bsa29I ATCGAT 2 cut(s) 159, 633
BsaBI GATNNNNATC 1 cut(s) 588
BsaJI CCNNGG 1 cut(s) 619
BsaWI WCCGGW 1 cut(s) 592
Bsc4I CCNNNNNNNGG 5 cut(s) 398, 680, 770, 814, 935
Bse1I ACTGG 3 cut(s) 74, 653, 940
Bse8I GATNNNNATC 1 cut(s) 588
BseAI TCCGGA 1 cut(s) 592
BseCI ATCGAT 2 cut(s) 159, 633
BseDI CCNNGG 1 cut(s) 619
BseGI GGATG 2 cut(s) 49, 508
BseJI GATNNNNATC 1 cut(s) 588
BseLI CCNNNNNNNGG 5 cut(s) 398, 680, 770, 814, 935
BseMII CTCAG 1 cut(s) 77
BseNI ACTGG 3 cut(s) 74, 653, 940
BseRI GAGGAG 2 cut(s) 68, 995
BseSI GKGCMC 1 cut(s) 307
BseXI GCAGC 1 cut(s) 879
BshNI GGYRCC 1 cut(s) 1104
BshVI ATCGAT 2 cut(s) 159, 633
BsiHKAI GWGCWC 2 cut(s) 63, 307
BsiSI CCGG 1 cut(s) 593
BslI CCNNNNNNNGG 5 cut(s) 398, 680, 770, 814, 935
BsmAI GTCTC 3 cut(s) 245, 517, 654
Bsp1286I GDGCHC 3 cut(s) 63, 307, 882
Bsp13I TCCGGA 1 cut(s) 592
Bsp143I GATC 4 cut(s) 31, 414, 688, 1087
BspACI CCGC 4 cut(s) 50, 740, 815, 829
BspCNI CTCAG 1 cut(s) 78
BspDI ATCGAT 2 cut(s) 159, 633
BspEI TCCGGA 1 cut(s) 592
BspLI GGNNCC 2 cut(s) 389, 1106
BspPI GGATC 3 cut(s) 39, 422, 683
BspT107I GGYRCC 1 cut(s) 1104
BsrI ACTGG 3 cut(s) 74, 653, 940
BssECI CCNNGG 1 cut(s) 619
BssMI GATC 4 cut(s) 31, 414, 688, 1087
BssNAI GTATAC 1 cut(s) 846
BssSI CACGAG 1 cut(s) 657
Bst1107I GTATAC 1 cut(s) 846
Bst2BI CACGAG 1 cut(s) 657
Bst4CI ACNGT 6 cut(s) 299, 509, 554, 620, 644, 781
Bst6I CTCTTC 1 cut(s) 85
BstDEI CTNAG 2 cut(s) 86, 292
BstDSI CCRYGG 1 cut(s) 619
BstF5I GGATG 2 cut(s) 49, 508
BstKTI GATC 4 cut(s) 34, 417, 691, 1090
BstMAI GTCTC 3 cut(s) 245, 517, 654
BstMBI GATC 4 cut(s) 31, 414, 688, 1087
BstMWI GCNNNNNNNGC 1 cut(s) 760
BstNSI RCATGY 1 cut(s) 108
BstSFI CTRYAG 1 cut(s) 550
BstSLI GKGCMC 1 cut(s) 307
BstV1I GCAGC 1 cut(s) 879
BstV2I GAAGAC 1 cut(s) 825
BstX2I RGATCY 2 cut(s) 31, 688
BstYI RGATCY 2 cut(s) 31, 688
BstZ17I GTATAC 1 cut(s) 846
Bsu15I ATCGAT 2 cut(s) 159, 633
BsuTUI ATCGAT 2 cut(s) 159, 633
BtgI CCRYGG 1 cut(s) 619
BtsCI GGATG 2 cut(s) 49, 508
BtsI GCAGTG 2 cut(s) 331, 894
BtsIMutI CAGTG 4 cut(s) 81, 331, 894, 933
CaiI CAGNNNCTG 1 cut(s) 648
ClaI ATCGAT 2 cut(s) 159, 633
Csp6I GTAC 1 cut(s) 95
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 4 cut(s) 105, 200, 570, 922
CviJI RGCY 8 cut(s) 291, 462, 763, 785, 880, 995, 1049, 1071
CviKI_1 RGCY 8 cut(s) 291, 462, 763, 785, 880, 995, 1049, 1071
CviQI GTAC 1 cut(s) 95
DdeI CTNAG 2 cut(s) 86, 292
DpnI GATC 4 cut(s) 33, 416, 690, 1089
DpnII GATC 4 cut(s) 31, 414, 688, 1087
Eam1104I CTCTTC 1 cut(s) 85
EarI CTCTTC 1 cut(s) 85
EciI GGCGGA 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 882
EcoT38I GRGCYC 1 cut(s) 882
FaeI CATG 4 cut(s) 108, 203, 573, 925
FalI AAGNNNNNCTT 4 cut(s) 893, 925, 1074, 1106
FatI CATG 4 cut(s) 104, 199, 569, 921
FauNDI CATATG 1 cut(s) 676
FblI GTMKAC 2 cut(s) 312, 845
Fnu4HI GCNGC 1 cut(s) 868
FokI GGATG 2 cut(s) 56, 515
FriOI GRGCYC 1 cut(s) 882
Fsp4HI GCNGC 1 cut(s) 868
FspBI CTAG 4 cut(s) 372, 792, 1101, 1111
GluI GCNGC 1 cut(s) 868
HapII CCGG 1 cut(s) 593
Hin1II CATG 4 cut(s) 108, 203, 573, 925
HincII GTYRAC 4 cut(s) 281, 313, 919, 976
HindII GTYRAC 4 cut(s) 281, 313, 919, 976
HinfI GANTC 7 cut(s) 99, 478, 560, 566, 589, 1036, 1097
HpaII CCGG 1 cut(s) 593
HphI GGTGA 3 cut(s) 521, 608, 785
Hpy166II GTNNAC 7 cut(s) 281, 305, 313, 616, 846, 919, 976
Hpy188I TCNGA 3 cut(s) 31, 87, 565
Hpy188III TCNNGA 5 cut(s) 64, 581, 593, 1004, 1078
Hpy8I GTNNAC 7 cut(s) 281, 305, 313, 616, 846, 919, 976
Hpy99I CGWCG 1 cut(s) 22
HpyAV CCTTC 3 cut(s) 513, 702, 955
HpyCH4III ACNGT 6 cut(s) 299, 509, 554, 620, 644, 781
HpyCH4V TGCA 6 cut(s) 4, 108, 305, 354, 656, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 760
HpyF3I CTNAG 2 cut(s) 86, 292
Hsp92II CATG 4 cut(s) 108, 203, 573, 925
Kpn2I TCCGGA 1 cut(s) 592
Kzo9I GATC 4 cut(s) 31, 414, 688, 1087
LpnPI CCDG 7 cut(s) 87, 436, 443, 606, 634, 821, 921
Lsp1109I GCAGC 1 cut(s) 879
LweI GCATC 2 cut(s) 12, 201
MaeI CTAG 4 cut(s) 372, 792, 1101, 1111
MaeIII GTNAC 2 cut(s) 76, 644
MalI GATC 4 cut(s) 33, 416, 690, 1089
MboI GATC 4 cut(s) 31, 414, 688, 1087
MflI RGATCY 2 cut(s) 31, 688
MhlI GDGCHC 3 cut(s) 63, 307, 882
MluCI AATT 2 cut(s) 408, 940
MlyI GAGTC 2 cut(s) 569, 1030
MroI TCCGGA 1 cut(s) 592
MseI TTAA 1 cut(s) 911
MspA1I CMGCKG 1 cut(s) 829
MspI CCGG 1 cut(s) 593
MwoI GCNNNNNNNGC 1 cut(s) 760
NdeI CATATG 1 cut(s) 676
NdeII GATC 4 cut(s) 31, 414, 688, 1087
NlaIII CATG 4 cut(s) 108, 203, 573, 925
NlaIV GGNNCC 2 cut(s) 389, 1106
NmuCI GTSAC 1 cut(s) 76
NspI RCATGY 1 cut(s) 108
PfeI GAWTC 5 cut(s) 99, 478, 566, 589, 1097
PkrI GCNGC 1 cut(s) 869
PleI GAGTC 2 cut(s) 568, 1030
PpsI GAGTC 2 cut(s) 568, 1030
PspN4I GGNNCC 2 cut(s) 389, 1106
PstNI CAGNNNCTG 1 cut(s) 648
PsuI RGATCY 2 cut(s) 31, 688
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SalI GTCGAC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 911
SatI GCNGC 1 cut(s) 868
Sau3AI GATC 4 cut(s) 31, 414, 688, 1087
SchI GAGTC 2 cut(s) 569, 1030
SduI GDGCHC 3 cut(s) 63, 307, 882
SfaNI GCATC 2 cut(s) 12, 201
SfcI CTRYAG 1 cut(s) 550
Sse9I AATT 2 cut(s) 408, 940
SsiI CCGC 4 cut(s) 50, 740, 815, 829
SspMI CTAG 4 cut(s) 372, 792, 1101, 1111
TaaI ACNGT 6 cut(s) 299, 509, 554, 620, 644, 781
TaqI TCGA 5 cut(s) 65, 159, 216, 312, 633
TasI AATT 2 cut(s) 408, 940
TfiI GAWTC 5 cut(s) 99, 478, 566, 589, 1097
Tru1I TTAA 1 cut(s) 911
Tru9I TTAA 1 cut(s) 911
TscAI CASTG 4 cut(s) 81, 338, 894, 940
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 1 cut(s) 867
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 4 cut(s) 188, 488, 558, 938
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 4 cut(s) 81, 338, 894, 940
VneI GTGCAC 1 cut(s) 303
XceI RCATGY 1 cut(s) 108
XmiI GTMKAC 2 cut(s) 312, 845
XspI CTAG 4 cut(s) 372, 792, 1101, 1111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.