AT2G07120

F-box associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Reverse (-)
2953605 .. 2954722
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G07120.1

Sequence Viewer

Length: 1062 bp
ATGGCGTCGGGGAAGCTTCCGTGGGAGTTGGAGGAAGAGATACTGTGTCGGCTTCCACCTGGATCCCTTGTTCGGAAAAGCTTGGGTTGTGCACGTCCCCAATTTATCATCCTGCCCGAATCCAAGATTTATTCGATAGGAACCATCGGCCTGGACGACTTTGATCCGAAGATAGAGGTGCGTGAGCTAGCCTGTCAATTTCATTTTAAGGCTGAGAAGTGGGCATTTACCAGGATCACGGCTTGCGATGGATTATTGTTTCGTGACTTTTGGAACCAAGGGGTTACCATTTGGAATCCATGGTTAAGACAGGTTGGGTGGATCGAGTATAAGGAGGACAGAGATTTCCGTTTTTGCGGTGTAGGATACGATGCTTGTAAACCCGAAAAGGATTACAAGATCTTTGGGTATTTTAGTCGTTTCTATGACACTACACTGAAAATCGGCCACAGATTTGCGATCTTTGAATGTGCGTCTCAAGCGTTTAAGTTCATTGATTCCCCGGAATGGCCAATGCTGGCAGGTCGAGGTGAATATGTGTCCTTGAATGGAAATTTGTATTGGACTGCTTACAATGAAGATACTCGTGAGCATTTTCTCGGAAGCTTTGATTTCTCCACAGAAATATCCATGCACTTTTGTCTCCTTCCTTGTGGGAAGCATGTTTCTGGCTTACGAGATAAACTTGTCCTCACTGTATTTAAGGGCGATCAGTTTGCATTGTTAAAGCAATCTCGTATATCAAGTAATACAGAGATTTGGGTAACAAATGACATGATTAACTCTAGTAATAATGTGGTGTGGTTAAACTTGATGACACTGTCAATACCTGATTTTCCCTCGCTATTCCATCAGCTTTCTGATATTAGTTACTTCATCCATGACATGACCCTTATCCTGTGCTGTGACGACAATCAAACTGGAGTGGGTTGCATCTTTATTGCGAGGGGAGACTTCTGCAAGAAGATTCAAATAGATTCTGTCTCTCTTGGGTTTTCTCAATGTGTCCATCTTCCAAGTTTGACCTCGGTTCCTTTGGAATTCAGATCACTGCAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

353

Amino Acids

40.6

Weight (kDa)

5.66

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 34 - 344 6.8e-73 F-box associated beta propeller domain
FBA_3 PF08268 65 - 261 8e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 512
AciI CCGC 1 cut(s) 357
AclWI GGATC 5 cut(s) 57, 70, 158, 242, 329
AcoI YGGCCR 2 cut(s) 445, 509
AcsI RAATTY 2 cut(s) 553, 1040
AcyI GRCGYC 1 cut(s) 5
AfiI CCNNNNNNNGG 2 cut(s) 72, 507
AgsI TTSAA 3 cut(s) 467, 547, 971
AjiI CACGTC 1 cut(s) 95
AjnI CCWGG 3 cut(s) 58, 150, 230
AjuI GAANNNNNNNTTGG 2 cut(s) 544, 576
AloI GAACNNNNNNTCC 2 cut(s) 54, 86
AluBI AGCT 5 cut(s) 16, 81, 187, 606, 856
AluI AGCT 5 cut(s) 16, 81, 187, 606, 856
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 4 cut(s) 480, 647, 945, 988
Alw44I GTGCAC 1 cut(s) 90
AlwI GGATC 5 cut(s) 57, 70, 158, 242, 329
AoxI GGCC 3 cut(s) 148, 445, 509
ApaLI GTGCAC 1 cut(s) 90
ApoI RAATTY 2 cut(s) 553, 1040
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 1 cut(s) 542
AsuNHI GCTAGC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 94
BalI TGGCCA 1 cut(s) 511
BamHI GGATCC 1 cut(s) 62
BauI CACGAG 1 cut(s) 585
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 4 cut(s) 152, 242, 858, 1017
BceAI ACGGC 1 cut(s) 255
BcgI CGANNNNNNTGC 2 cut(s) 698, 732
BciT130I CCWGG 3 cut(s) 60, 152, 232
BciVI GTATCC 1 cut(s) 359
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 4 cut(s) 480, 647, 945, 988
BfaI CTAG 2 cut(s) 188, 786
BfuAI ACCTGC 1 cut(s) 512
BfuI GTATCC 1 cut(s) 359
BglII AGATCT 1 cut(s) 399
Bme1390I CCNGG 4 cut(s) 60, 152, 232, 503
BmgBI CACGTC 1 cut(s) 95
BmiI GGNNCC 4 cut(s) 64, 142, 275, 1032
BmrFI CCNGG 4 cut(s) 60, 152, 232, 503
BmsI GCATC 2 cut(s) 361, 942
BmtI GCTAGC 1 cut(s) 191
BpmI CTGGAG 1 cut(s) 942
BpuEI CTTGAG 1 cut(s) 462
BpuMI CCSGG 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 5 cut(s) 20, 277, 299, 501, 1026
Bsc4I CCNNNNNNNGG 2 cut(s) 72, 507
Bse1I ACTGG 1 cut(s) 925
BseBI CCWGG 3 cut(s) 60, 152, 232
BseDI CCNNGG 5 cut(s) 20, 277, 299, 501, 1026
BseGI GGATG 2 cut(s) 108, 876
BseLI CCNNNNNNNGG 2 cut(s) 72, 507
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 925
BseSI GKGCMC 1 cut(s) 94
BshFI GGCC 3 cut(s) 150, 447, 511
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 503
BslFI GGGAC 1 cut(s) 81
BslI CCNNNNNNNGG 2 cut(s) 72, 507
BsmAI GTCTC 4 cut(s) 480, 647, 945, 988
BsmBI CGTCTC 1 cut(s) 480
BsmFI GGGAC 1 cut(s) 81
BsnI GGCC 3 cut(s) 150, 447, 511
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 357
BspANI GGCC 3 cut(s) 150, 447, 511
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 4 cut(s) 64, 142, 275, 1032
BspMI ACCTGC 1 cut(s) 512
BspOI GCTAGC 1 cut(s) 191
BspPI GGATC 5 cut(s) 57, 70, 158, 242, 329
BsrI ACTGG 1 cut(s) 925
BssECI CCNNGG 5 cut(s) 20, 277, 299, 501, 1026
BssMI GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 585
BssT1I CCWWGG 2 cut(s) 277, 299
Bst2BI CACGAG 1 cut(s) 585
Bst2UI CCWGG 3 cut(s) 60, 152, 232
Bst4CI ACNGT 3 cut(s) 45, 697, 822
Bst6I CTCTTC 1 cut(s) 30
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 189, 244, 519
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 2 cut(s) 20, 299
BstEII GGTNACC 1 cut(s) 283
BstF5I GGATG 2 cut(s) 108, 876
BstKTI GATC 8 cut(s) 65, 166, 237, 324, 402, 462, 712, 1049
BstMAI GTCTC 4 cut(s) 480, 647, 945, 988
BstMBI GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
BstMWI GCNNNNNNNGC 1 cut(s) 479
BstNI CCWGG 3 cut(s) 60, 152, 232
BstNSI RCATGY 1 cut(s) 665
BstPI GGTNACC 1 cut(s) 283
BstSCI CCNGG 4 cut(s) 58, 150, 230, 501
BstSLI GKGCMC 1 cut(s) 94
BstX2I RGATCY 2 cut(s) 62, 399
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 2 cut(s) 62, 399
BsuI GTATCC 1 cut(s) 359
BsuRI GGCC 3 cut(s) 150, 447, 511
BtgI CCRYGG 2 cut(s) 20, 299
BtgZI GCGATG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 95
BtsCI GGATG 2 cut(s) 108, 876
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 4 cut(s) 434, 693, 818, 1049
BveI ACCTGC 1 cut(s) 512
Cac8I GCNNGC 3 cut(s) 189, 244, 519
CseI GACGC 1 cut(s) 462
CviAII CATG 6 cut(s) 300, 631, 662, 775, 881, 886
DdeI CTNAG 1 cut(s) 213
DpnI GATC 8 cut(s) 64, 165, 236, 323, 401, 461, 711, 1048
DpnII GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
EaeI YGGCCR 2 cut(s) 445, 509
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 277, 299
Eco91I GGTNACC 1 cut(s) 283
EcoO65I GGTNACC 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 1040
EcoRII CCWGG 3 cut(s) 58, 150, 230
EcoT14I CCWWGG 2 cut(s) 277, 299
ErhI CCWWGG 2 cut(s) 277, 299
Esp3I CGTCTC 1 cut(s) 480
FaeI CATG 6 cut(s) 303, 634, 665, 778, 884, 889
FaqI GGGAC 1 cut(s) 81
FatI CATG 6 cut(s) 299, 630, 661, 774, 880, 885
FokI GGATG 2 cut(s) 95, 863
FspBI CTAG 2 cut(s) 188, 786
GsuI CTGGAG 1 cut(s) 942
HaeIII GGCC 3 cut(s) 150, 447, 511
HapII CCGG 1 cut(s) 503
HgaI GACGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 303, 634, 665, 778, 884, 889
HindIII AAGCTT 3 cut(s) 14, 79, 604
HinfI GANTC 5 cut(s) 119, 295, 497, 967, 977
HpaII CCGG 1 cut(s) 503
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 2 cut(s) 92, 380
Hpy188I TCNGA 5 cut(s) 75, 168, 602, 862, 1046
Hpy188III TCNNGA 2 cut(s) 263, 587
Hpy8I GTNNAC 2 cut(s) 92, 380
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 656
HpyCH4III ACNGT 3 cut(s) 45, 697, 822
HpyCH4IV ACGT 1 cut(s) 94
HpyCH4V TGCA 6 cut(s) 92, 634, 719, 933, 960, 1054
HpyF10VI GCNNNNNNNGC 1 cut(s) 479
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 94
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 303, 634, 665, 778, 884, 889
Kzo9I GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
LweI GCATC 2 cut(s) 361, 942
MaeI CTAG 2 cut(s) 188, 786
MaeII ACGT 1 cut(s) 94
MaeIII GTNAC 5 cut(s) 263, 283, 763, 869, 905
MalI GATC 8 cut(s) 64, 165, 236, 323, 401, 461, 711, 1048
MboI GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
MboII GAAGA 5 cut(s) 47, 181, 590, 976, 1004
MflI RGATCY 2 cut(s) 62, 399
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 511
MluCI AATT 4 cut(s) 101, 197, 553, 1040
MluNI TGGCCA 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 8 cut(s) 25, 169, 328, 521, 701, 850, 939, 1036
Mox20I TGGCCA 1 cut(s) 511
MscI TGGCCA 1 cut(s) 511
MseI TTAA 7 cut(s) 207, 305, 486, 702, 725, 780, 806
Msp20I TGGCCA 1 cut(s) 511
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 4 cut(s) 60, 152, 232, 503
MvaI CCWGG 3 cut(s) 60, 152, 232
MwoI GCNNNNNNNGC 1 cut(s) 479
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 299
NdeII GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 6 cut(s) 303, 634, 665, 778, 884, 889
NlaIV GGNNCC 4 cut(s) 64, 142, 275, 1032
NmuCI GTSAC 2 cut(s) 263, 905
NspI RCATGY 1 cut(s) 665
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PfeI GAWTC 5 cut(s) 119, 295, 497, 967, 977
PflFI GACNNNGTC 1 cut(s) 820
Psp6I CCWGG 3 cut(s) 58, 150, 230
PspEI GGTNACC 1 cut(s) 283
PspGI CCWGG 3 cut(s) 58, 150, 230
PspN4I GGNNCC 4 cut(s) 64, 142, 275, 1032
PsuI RGATCY 2 cut(s) 62, 399
PsyI GACNNNGTC 1 cut(s) 820
SaqAI TTAA 7 cut(s) 207, 305, 486, 702, 725, 780, 806
Sau3AI GATC 8 cut(s) 62, 163, 234, 321, 399, 459, 709, 1046
ScrFI CCNGG 4 cut(s) 60, 152, 232, 503
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 2 cut(s) 361, 942
SmlI CTYRAG 1 cut(s) 477
SmoI CTYRAG 1 cut(s) 477
Sse9I AATT 4 cut(s) 101, 197, 553, 1040
SsiI CCGC 1 cut(s) 357
SspMI CTAG 2 cut(s) 188, 786
StyD4I CCNGG 4 cut(s) 58, 150, 230, 501
StyI CCWWGG 2 cut(s) 277, 299
TaaI ACNGT 3 cut(s) 45, 697, 822
TaiI ACGT 1 cut(s) 97
TaqI TCGA 3 cut(s) 134, 324, 526
TasI AATT 4 cut(s) 101, 197, 553, 1040
TfiI GAWTC 5 cut(s) 119, 295, 497, 967, 977
Tru1I TTAA 7 cut(s) 207, 305, 486, 702, 725, 780, 806
Tru9I TTAA 7 cut(s) 207, 305, 486, 702, 725, 780, 806
TscAI CASTG 4 cut(s) 441, 700, 825, 1056
TseFI GTSAC 2 cut(s) 263, 905
Tsp45I GTSAC 2 cut(s) 263, 905
TspDTI ATGAA 4 cut(s) 191, 481, 591, 865
TspGWI ACGGA 2 cut(s) 9, 338
TspRI CASTG 4 cut(s) 441, 700, 825, 1056
Tth111I GACNNNGTC 1 cut(s) 820
VneI GTGCAC 1 cut(s) 90
XapI RAATTY 2 cut(s) 553, 1040
XceI RCATGY 1 cut(s) 665
XspI CTAG 2 cut(s) 188, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.