AT3G17570

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000186
Physical Location & Seq
Forward (+)
6009407 .. 6010562
1156 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17570.1

Sequence Viewer

Length: 1146 bp
ATGTTTACCGATCTTCCACGAGATTTAGAAACAGAAATACTCTCAAGAGTTCCCGCCACATCTCTACAAAAATTGAAGCCTACTTGCAAACGGTGGTACACTTTATTCAAAGATCCGGAATTCCTCAAGAAGCATGTGGGTAGAGCGGAAAGGGAGGTGATTTCGCTGATGAGTCTCAGGGTTTATTCACTTAGTGTTAATCTCTCTGGAATCCACAGCAGCGTTGAAATGACAGGTATGTTAAACAGTCTCAAGGATTCTGAAGATGTCAAAATATCTGACATCACTGAGTGCAACGGTTTATTATTGTGCACCACCGATGACAGTAGACTTGTGGTTTGGAACCCTTATACTGGTGAAACCAGGTGGATCCCTTACAAATCCAACTCACCTTATGAAATGTACCAGAAGTTTGTTTTGGGATACGACAACACCAATAAATCTCGCTATAGCTACAAAATCTTGAGGTGTTACCACGGCTTGATCGACTTTGGTTATGAGTTTGAAATCTATGAGTTTAACTCTCATTCATGGAGGAGATTTTATGACAACTCTCCTAATTGTTCCTTTGAATCTAAGGGCGTGACACTGAAGGGCAACACTTACTGGTTTGCTTCAGATACTGAAGGCCGCCACATCATACTCAGGTTTGATTTCGCAACAGAGAGATTTGGACGTCTCTCTCTTCTTTATCAGAGTGGTGGTTATGTTGATAATGTTGTGGAAACTGGGGTTTTATCGGCTGTTAGAGAAGAGAAACTTGCGTTGTTATATGAGAGGTTTGATGAGCTGAATGATTCATCAGAGATGAAGATATGGGTGACGAATACTAAAATCGTCGAGGCCAAAGACTTGTCGTGGAGCGACTTCTTGGTAGTGGATTCCTCTAAATTTATGGTAACAAGGATGACGAATGTGATGAGTTTCCTGGTGGACGAGGAGAAAAAAATGGTGGTGGTTTGTGATACAGACATTGATCAACATATGAACAGATTTTACATTGTCGGAGAGGATATATACAAAGAAGTTTATAAAGATATTGCACAGGGATGGTTTTCCTATTGGCCACTTCTCATCAGTTATGCTCCAAGTCTGGTTCAAATTCAGCAAGGTAAAGTGATTCCCGGAGGCAAAAGAAAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210
Pfam Domains
Protein Families
PPR PPR_2 PPR_3 RRM_1

Protein Analysis

381

Amino Acids

44.47

Weight (kDa)

5.98

Isoelectric Point (pI)

38.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 2 - 43 1.4e-07 F-box domain
FBA_1 PF07734 53 - 368 8.1e-93 F-box associated beta propeller domain
FBA_3 PF08268 90 - 335 2.9e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1032
AatII GACGTC 1 cut(s) 679
AccBSI CCGCTC 1 cut(s) 146
AccI GTMKAC 1 cut(s) 328
AccIII TCCGGA 1 cut(s) 115
AciI CCGC 3 cut(s) 54, 146, 631
AclWI GGATC 3 cut(s) 107, 364, 377
AcoI YGGCCR 1 cut(s) 1064
AcsI RAATTY 3 cut(s) 119, 890, 1101
AcuI CTGAAG 4 cut(s) 282, 600, 611, 645
AcyI GRCGYC 1 cut(s) 676
AdeI CACNNNGTG 2 cut(s) 194, 291
AfaI GTAC 2 cut(s) 98, 404
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 6 cut(s) 76, 109, 227, 506, 572, 1100
AjnI CCWGG 2 cut(s) 362, 927
AjuI GAANNNNNNNTTGG 2 cut(s) 401, 433
AluBI AGCT 2 cut(s) 453, 790
AluI AGCT 2 cut(s) 453, 790
Alw21I GWGCWC 1 cut(s) 314
Alw26I GTCTC 3 cut(s) 179, 254, 683
Alw44I GTGCAC 1 cut(s) 310
AlwI GGATC 3 cut(s) 107, 364, 377
AlwNI CAGNNNCTG 1 cut(s) 623
Aor13HI TCCGGA 1 cut(s) 115
AoxI GGCC 3 cut(s) 628, 843, 1064
ApaLI GTGCAC 1 cut(s) 310
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 3 cut(s) 119, 890, 1101
ArsI GACNNNNNNTTYG 2 cut(s) 321, 353
AsuC2I CCSGG 1 cut(s) 1125
AsuHPI GGTGA 4 cut(s) 169, 368, 381, 832
BaeGI GKGCMC 1 cut(s) 314
BalI TGGCCA 1 cut(s) 1066
BamHI GGATCC 1 cut(s) 369
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 314
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 1044
BceAI ACGGC 1 cut(s) 493
BciT130I CCWGG 2 cut(s) 364, 929
BciVI GTATCC 1 cut(s) 416
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 1 cut(s) 1125
BcoDI GTCTC 3 cut(s) 179, 254, 683
BfmI CTRYAG 1 cut(s) 448
BfuI GTATCC 1 cut(s) 416
BisI GCNGC 2 cut(s) 220, 631
BlsI GCNGC 2 cut(s) 221, 632
Bme1390I CCNGG 3 cut(s) 364, 929, 1125
BmiI GGNNCC 2 cut(s) 344, 371
BmrFI CCNGG 3 cut(s) 364, 929, 1125
BmrI ACTGGG 1 cut(s) 738
BmuI ACTGGG 1 cut(s) 738
BplI GAGNNNNNCTC 2 cut(s) 506, 538
BpuEI CTTGAG 4 cut(s) 28, 110, 236, 484
BpuMI CCSGG 1 cut(s) 1125
BsaHI GRCGYC 1 cut(s) 676
BsaJI CCNNGG 1 cut(s) 475
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 3 cut(s) 358, 611, 733
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 2 cut(s) 364, 929
BseDI CCNNGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 912, 1055
BseLI CCNNNNNNNGG 1 cut(s) 353
BseMII CTCAG 3 cut(s) 190, 279, 658
BseNI ACTGG 3 cut(s) 358, 611, 733
BseRI GAGGAG 2 cut(s) 550, 953
BseSI GKGCMC 1 cut(s) 314
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 3 cut(s) 630, 845, 1066
BsiHKAI GWGCWC 1 cut(s) 314
BsiSI CCGG 2 cut(s) 116, 1125
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 3 cut(s) 179, 254, 683
BsmBI CGTCTC 1 cut(s) 683
BsnI GGCC 3 cut(s) 630, 845, 1066
Bsp1286I GDGCHC 1 cut(s) 314
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 5 cut(s) 10, 112, 369, 483, 976
BspACI CCGC 3 cut(s) 54, 146, 631
BspANI GGCC 3 cut(s) 630, 845, 1066
BspCNI CTCAG 3 cut(s) 189, 280, 657
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 344, 371
BspPI GGATC 3 cut(s) 107, 364, 377
BsrBI CCGCTC 1 cut(s) 146
BsrI ACTGG 3 cut(s) 358, 611, 733
BssECI CCNNGG 1 cut(s) 475
BssMI GATC 5 cut(s) 10, 112, 369, 483, 976
BssNI GRCGYC 1 cut(s) 676
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 2 cut(s) 364, 929
Bst4CI ACNGT 4 cut(s) 93, 248, 299, 326
Bst6I CTCTTC 2 cut(s) 690, 747
BstACI GRCGYC 1 cut(s) 676
BstDEI CTNAG 5 cut(s) 176, 191, 288, 576, 644
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 2 cut(s) 912, 1055
BstKTI GATC 5 cut(s) 13, 115, 372, 486, 979
BstMAI GTCTC 3 cut(s) 179, 254, 683
BstMBI GATC 5 cut(s) 10, 112, 369, 483, 976
BstNI CCWGG 2 cut(s) 364, 929
BstNSI RCATGY 1 cut(s) 137
BstSCI CCNGG 3 cut(s) 362, 927, 1123
BstSFI CTRYAG 1 cut(s) 448
BstSLI GKGCMC 1 cut(s) 314
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 2 cut(s) 112, 369
BstYI RGATCY 2 cut(s) 112, 369
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 3 cut(s) 630, 845, 1066
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 2 cut(s) 912, 1055
BtsIMutI CAGTG 2 cut(s) 285, 587
CaiI CAGNNNCTG 1 cut(s) 623
CsiI ACCWGGT 1 cut(s) 362
Csp6I GTAC 2 cut(s) 97, 403
CviAII CATG 2 cut(s) 134, 531
CviJI RGCY 8 cut(s) 79, 453, 480, 630, 743, 790, 845, 1066
CviKI_1 RGCY 8 cut(s) 79, 453, 480, 630, 743, 790, 845, 1066
CviQI GTAC 2 cut(s) 97, 403
DdeI CTNAG 5 cut(s) 176, 191, 288, 576, 644
DpnI GATC 5 cut(s) 12, 114, 371, 485, 978
DpnII GATC 5 cut(s) 10, 112, 369, 483, 976
DraIII CACNNNGTG 2 cut(s) 194, 291
EaeI YGGCCR 1 cut(s) 1064
Eam1104I CTCTTC 2 cut(s) 690, 747
EarI CTCTTC 2 cut(s) 690, 747
Eco57I CTGAAG 4 cut(s) 282, 600, 611, 645
EcoRI GAATTC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 362, 927
Esp3I CGTCTC 1 cut(s) 683
FaeI CATG 2 cut(s) 137, 534
FalI AAGNNNNNCTT 2 cut(s) 744, 776
FatI CATG 2 cut(s) 133, 530
FauI CCCGC 1 cut(s) 61
FauNDI CATATG 1 cut(s) 984
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 220, 631
FokI GGATG 2 cut(s) 919, 1062
Fsp4HI GCNGC 2 cut(s) 220, 631
GluI GCNGC 2 cut(s) 220, 631
HaeIII GGCC 3 cut(s) 630, 845, 1066
HapII CCGG 2 cut(s) 116, 1125
Hin1I GRCGYC 1 cut(s) 676
Hin1II CATG 2 cut(s) 137, 534
HinfI GANTC 7 cut(s) 172, 210, 257, 572, 797, 881, 1120
HpaII CCGG 2 cut(s) 116, 1125
HphI GGTGA 4 cut(s) 169, 368, 381, 832
Hpy166II GTNNAC 5 cut(s) 6, 99, 312, 329, 934
Hpy188I TCNGA 6 cut(s) 262, 280, 619, 696, 805, 1007
Hpy188III TCNNGA 5 cut(s) 45, 116, 127, 207, 463
Hpy8I GTNNAC 5 cut(s) 6, 99, 312, 329, 934
Hpy99I CGWCG 1 cut(s) 842
HpyAV CCTTC 2 cut(s) 586, 620
HpyCH4III ACNGT 4 cut(s) 93, 248, 299, 326
HpyCH4IV ACGT 1 cut(s) 676
HpyCH4V TGCA 4 cut(s) 87, 294, 312, 1043
HpyF3I CTNAG 5 cut(s) 176, 191, 288, 576, 644
HpySE526I ACGT 1 cut(s) 676
Hsp92I GRCGYC 1 cut(s) 676
Hsp92II CATG 2 cut(s) 137, 534
Kpn2I TCCGGA 1 cut(s) 115
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 5 cut(s) 10, 112, 369, 483, 976
LmnI GCTCC 2 cut(s) 861, 1090
Lsp1109I GCAGC 1 cut(s) 231
MabI ACCWGGT 1 cut(s) 362
MaeII ACGT 1 cut(s) 676
MaeIII GTNAC 4 cut(s) 470, 583, 820, 898
MalI GATC 5 cut(s) 12, 114, 371, 485, 978
MbiI CCGCTC 1 cut(s) 146
MboI GATC 5 cut(s) 10, 112, 369, 483, 976
MboII GAAGA 5 cut(s) 5, 275, 677, 764, 823
MflI RGATCY 2 cut(s) 112, 369
MhlI GDGCHC 1 cut(s) 314
MlsI TGGCCA 1 cut(s) 1066
MluCI AATT 5 cut(s) 71, 119, 559, 890, 1101
MluNI TGGCCA 1 cut(s) 1066
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 2 cut(s) 408, 985
Mox20I TGGCCA 1 cut(s) 1066
MroI TCCGGA 1 cut(s) 115
MscI TGGCCA 1 cut(s) 1066
MseI TTAA 3 cut(s) 198, 242, 519
MslI CAYNNNNRTG 1 cut(s) 1048
Msp20I TGGCCA 1 cut(s) 1066
MspI CCGG 2 cut(s) 116, 1125
MspR9I CCNGG 3 cut(s) 364, 929, 1125
MvaI CCWGG 2 cut(s) 364, 929
NciI CCSGG 1 cut(s) 1125
NdeI CATATG 1 cut(s) 984
NdeII GATC 5 cut(s) 10, 112, 369, 483, 976
NlaIII CATG 2 cut(s) 137, 534
NlaIV GGNNCC 2 cut(s) 344, 371
NmuCI GTSAC 2 cut(s) 583, 820
NspI RCATGY 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 6 cut(s) 210, 257, 572, 797, 881, 1120
PfoI TCCNGGA 1 cut(s) 1123
PkrI GCNGC 2 cut(s) 221, 632
PleI GAGTC 1 cut(s) 180
PpsI GAGTC 1 cut(s) 180
PsiI TTATAA 1 cut(s) 1032
Psp6I CCWGG 2 cut(s) 362, 927
PspGI CCWGG 2 cut(s) 362, 927
PspN4I GGNNCC 2 cut(s) 344, 371
PsrI GAACNNNNNNTAC 2 cut(s) 980, 1012
PstNI CAGNNNCTG 1 cut(s) 623
PsuI RGATCY 2 cut(s) 112, 369
RsaI GTAC 2 cut(s) 98, 404
RsaNI GTAC 2 cut(s) 97, 403
RseI CAYNNNNRTG 1 cut(s) 1048
SaqAI TTAA 3 cut(s) 198, 242, 519
SatI GCNGC 2 cut(s) 220, 631
Sau3AI GATC 5 cut(s) 10, 112, 369, 483, 976
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 3 cut(s) 364, 929, 1125
SduI GDGCHC 1 cut(s) 314
SexAI ACCWGGT 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 448
SmiMI CAYNNNNRTG 1 cut(s) 1048
SmlI CTYRAG 4 cut(s) 43, 125, 251, 463
SmoI CTYRAG 4 cut(s) 43, 125, 251, 463
Sse9I AATT 5 cut(s) 71, 119, 559, 890, 1101
SsiI CCGC 3 cut(s) 54, 146, 631
StyD4I CCNGG 3 cut(s) 362, 927, 1123
TaaI ACNGT 4 cut(s) 93, 248, 299, 326
TaiI ACGT 1 cut(s) 679
TaqI TCGA 2 cut(s) 486, 840
TasI AATT 5 cut(s) 71, 119, 559, 890, 1101
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 6 cut(s) 210, 257, 572, 797, 881, 1120
Tru1I TTAA 3 cut(s) 198, 242, 519
Tru9I TTAA 3 cut(s) 198, 242, 519
TscAI CASTG 2 cut(s) 292, 594
TseFI GTSAC 2 cut(s) 583, 820
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 2 cut(s) 583, 820
TspDTI ATGAA 5 cut(s) 411, 519, 789, 824, 1001
TspRI CASTG 2 cut(s) 292, 594
VneI GTGCAC 1 cut(s) 310
XapI RAATTY 3 cut(s) 119, 890, 1101
XceI RCATGY 1 cut(s) 137
XmiI GTMKAC 1 cut(s) 328
ZraI GACGTC 1 cut(s) 677
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.