AT2G04920

endonuclease activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
1726138 .. 1727268
1131 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G04920.1

Sequence Viewer

Length: 1131 bp
ATGTCTGATCTTCCACCGGATTTGGTGGAAGACATACTCTCTAGGGTCCCAGCCACATCTCTGAAACGATTACGGTTTACTTGCAAACAATGGAACTCTTTATTCAAAAACCGAAGATTCACAGAGAAGCACTTTTGTAAAGCTCCAAAGCAGTCTCATGTTCTCTTATGGAAGGATTATACGGTTTGTCCAATGAGCATCAATCTCAACTTTTCTGGTTCGTCTATAGAGTTTAAGAGTGTACTTAGCCTAAAGGATTCACATTATAATTCAGAACAAGTCTATATAGCCAAAGTTTTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGATCATAGACTCTTAGTTTGGAATCCGTGTTTGGGGGAAACCAGGTGGATCAACTTTGAAAATGATTACAAGCCATATTCTAGGTTTTCTCTAGGATACAAAAATAACAAATCATGCCGTAGCTACAAAATCTTGAGGTTTTGGACATCTTATTTGACACCAAACCATATTGGCCTAAGGTATAATATCTATGAGTTTACCACTGATTCATGGAGGGTTCTTATTGATAAAGTCTCTCTCAACTACTTTCTCATAGAATCAGAGAATGGTGTGTCTTTCAAAGGAAATACTTATTGGCTTGCTTTAGATGAAGAAACAAATTTCTTACTCGGTTTTGATTTTACAATGGAGAGATTTAAACGTTTGTGTCTTCCCTCAAATAAGAATTGTGATACGATGGTTCTATCGGTTGTTAGAGAAGAAAAACTCTCAGTATCACATCAGAACTTTTGTTCATCAAAGATGGATATTTGGATGACCAATAGAATTGATAGTGAAACCGCCATGTCCTGGAAGAGGTACTTTTCTGTGGAGTTTAAAATCCTTAGTATGTGTCATTCTTTACCGTTTTGCAATAGTTTTCTGATCGATGAGGAAAAGAAAATTGTCATATCGACTGTAAGGGGTAATGAGAACATGGTAAACATTATTGGAGCGTACAATGCGTATTATGCAGAAGTCCCTGTGGAATCTACAAATTGGCCATGTAGTCCATATTTTGTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTAAAAGCAAAGAAAATAATAAAACTAGTCTTGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko01524 ko03430 ko05200 ko05210 map01524 map03430 map05200 map05210
Pfam Domains
Protein Families
PPR PPR_2 PPR_3 RRM_1

Protein Analysis

376

Amino Acids

44.17

Weight (kDa)

8.63

Isoelectric Point (pI)

49.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 1 - 42 2e-11 F-box domain
F-box-like PF12937 1 - 38 3.4e-07 F-box-like
FBA_1 PF07734 54 - 361 1.8e-97 F-box associated beta propeller domain
FBA_3 PF08268 81 - 284 7.2e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 267
AccB7I CCANNNNNTGG 1 cut(s) 843
AciI CCGC 1 cut(s) 834
AclI AACGTT 1 cut(s) 694
AclWI GGATC 2 cut(s) 342, 389
AcoI YGGCCR 1 cut(s) 1034
AcsI RAATTY 1 cut(s) 652
AfaI GTAC 3 cut(s) 243, 854, 992
AfiI CCNNNNNNNGG 3 cut(s) 365, 843, 849
AgsI TTSAA 5 cut(s) 106, 392, 613, 1079, 1124
AhlI ACTAGT 1 cut(s) 1115
AjnI CCWGG 2 cut(s) 374, 842
AjuI GAANNNNNNNTTGG 4 cut(s) 347, 379, 610, 642
AluBI AGCT 2 cut(s) 143, 456
AluI AGCT 2 cut(s) 143, 456
Alw26I GTCTC 2 cut(s) 159, 571
AlwI GGATC 2 cut(s) 342, 389
AoxI GGCC 2 cut(s) 505, 1034
ApoI RAATTY 1 cut(s) 652
ArsI GACNNNNNNTTYG 4 cut(s) 333, 365, 469, 501
AspS9I GGNCC 1 cut(s) 46
AvaII GGWCC 1 cut(s) 46
AxyI CCTNAGG 1 cut(s) 509
BaeI ACNNNNGTAYC 2 cut(s) 717, 750
BalI TGGCCA 1 cut(s) 1036
BbsI GAAGAC 2 cut(s) 36, 695
BccI CCATC 3 cut(s) 302, 724, 790
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 2 cut(s) 376, 844
BciVI GTATCC 1 cut(s) 422
BcoDI GTCTC 2 cut(s) 159, 571
BcuI ACTAGT 1 cut(s) 1115
BfaI CTAG 4 cut(s) 42, 414, 425, 1116
BfmI CTRYAG 1 cut(s) 225
BfuI GTATCC 1 cut(s) 422
Bme1390I CCNGG 2 cut(s) 376, 844
Bme18I GGWCC 1 cut(s) 46
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 47, 48
BmrFI CCNGG 2 cut(s) 376, 844
BmsI GCATC 1 cut(s) 207
BpiI GAAGAC 2 cut(s) 36, 695
BpuEI CTTGAG 1 cut(s) 487
Bsa29I ATCGAT 1 cut(s) 921
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 843, 849
Bse21I CCTNAGG 1 cut(s) 509
Bse3DI GCAATG 1 cut(s) 1094
BseBI CCWGG 2 cut(s) 376, 844
BseCI ATCGAT 1 cut(s) 921
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 813
BseLI CCNNNNNNNGG 3 cut(s) 365, 843, 849
BseMI GCAATG 1 cut(s) 1094
BseMII CTCAG 1 cut(s) 777
BseYI CCCAGC 1 cut(s) 49
BshFI GGCC 2 cut(s) 507, 1036
BshVI ATCGAT 1 cut(s) 921
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 2 cut(s) 32, 998
BslI CCNNNNNNNGG 3 cut(s) 365, 843, 849
BsmAI GTCTC 2 cut(s) 159, 571
BsmFI GGGAC 2 cut(s) 32, 998
BsnI GGCC 2 cut(s) 507, 1036
Bsp143I GATC 4 cut(s) 7, 334, 381, 918
BspACI CCGC 1 cut(s) 834
BspANI GGCC 2 cut(s) 507, 1036
BspCNI CTCAG 1 cut(s) 776
BspDI ATCGAT 1 cut(s) 921
BspLI GGNNCC 2 cut(s) 47, 48
BspPI GGATC 2 cut(s) 342, 389
BsrDI GCAATG 1 cut(s) 1094
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 4 cut(s) 7, 334, 381, 918
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 2 cut(s) 376, 844
Bst4CI ACNGT 4 cut(s) 75, 184, 900, 952
Bst6I CTCTTC 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 5 cut(s) 245, 346, 509, 763, 878
BstENI CCTNNNNNAGG 1 cut(s) 847
BstF5I GGATG 1 cut(s) 813
BstKTI GATC 4 cut(s) 10, 337, 384, 921
BstMAI GTCTC 2 cut(s) 159, 571
BstMBI GATC 4 cut(s) 7, 334, 381, 918
BstMWI GCNNNNNNNGC 2 cut(s) 995, 1004
BstNI CCWGG 2 cut(s) 376, 844
BstSCI CCNGG 2 cut(s) 374, 842
BstSFI CTRYAG 1 cut(s) 225
BstV2I GAAGAC 2 cut(s) 36, 695
Bsu15I ATCGAT 1 cut(s) 921
Bsu36I CCTNAGG 1 cut(s) 509
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 2 cut(s) 507, 1036
BsuTUI ATCGAT 1 cut(s) 921
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 813
BtsI GCAGTG 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 301, 534
Cac8I GCNNGC 1 cut(s) 633
Cfr13I GGNCC 1 cut(s) 46
ClaI ATCGAT 1 cut(s) 921
CsiI ACCWGGT 1 cut(s) 374
Csp6I GTAC 3 cut(s) 242, 853, 991
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 6 cut(s) 158, 447, 543, 838, 970, 1038
CviJI RGCY 9 cut(s) 53, 143, 249, 290, 406, 456, 507, 631, 1036
CviKI_1 RGCY 9 cut(s) 53, 143, 249, 290, 406, 456, 507, 631, 1036
CviQI GTAC 3 cut(s) 242, 853, 991
DdeI CTNAG 5 cut(s) 245, 346, 509, 763, 878
DpnI GATC 4 cut(s) 9, 336, 383, 920
DpnII GATC 4 cut(s) 7, 334, 381, 918
DraI TTTAAA 2 cut(s) 691, 871
EaeI YGGCCR 1 cut(s) 1034
Eam1104I CTCTTC 1 cut(s) 842
EarI CTCTTC 1 cut(s) 842
Eco130I CCWWGG 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 46
Eco81I CCTNAGG 1 cut(s) 509
EcoNI CCTNNNNNAGG 1 cut(s) 847
EcoO109I RGGNCCY 1 cut(s) 46
EcoRII CCWGG 2 cut(s) 374, 842
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 6 cut(s) 161, 450, 546, 841, 973, 1041
FalI AAGNNNNNCTT 2 cut(s) 839, 871
FaqI GGGAC 2 cut(s) 32, 998
FatI CATG 6 cut(s) 157, 446, 542, 837, 969, 1037
FokI GGATG 1 cut(s) 820
FspBI CTAG 4 cut(s) 42, 414, 425, 1116
GsaI CCCAGC 1 cut(s) 53
HaeIII GGCC 2 cut(s) 507, 1036
HapII CCGG 1 cut(s) 17
Hin1II CATG 6 cut(s) 161, 450, 546, 841, 973, 1041
HinfI GANTC 7 cut(s) 117, 257, 342, 355, 539, 590, 1022
HpaII CCGG 1 cut(s) 17
Hpy166II GTNNAC 4 cut(s) 78, 242, 531, 976
Hpy188I TCNGA 6 cut(s) 7, 63, 274, 595, 777, 918
Hpy188III TCNNGA 2 cut(s) 466, 1121
Hpy8I GTNNAC 4 cut(s) 78, 242, 531, 976
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 4 cut(s) 75, 184, 900, 952
HpyCH4IV ACGT 1 cut(s) 694
HpyCH4V TGCA 4 cut(s) 84, 324, 906, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 995, 1004
HpyF3I CTNAG 5 cut(s) 245, 346, 509, 763, 878
HpySE526I ACGT 1 cut(s) 694
Hsp92II CATG 6 cut(s) 161, 450, 546, 841, 973, 1041
KflI GGGWCCC 1 cut(s) 46
Kzo9I GATC 4 cut(s) 7, 334, 381, 918
LmnI GCTCC 2 cut(s) 148, 986
LpnPI CCDG 9 cut(s) 30, 63, 201, 361, 388, 829, 856, 1029, 1097
LweI GCATC 1 cut(s) 207
MabI ACCWGGT 1 cut(s) 374
MaeI CTAG 4 cut(s) 42, 414, 425, 1116
MaeII ACGT 1 cut(s) 694
MalI GATC 4 cut(s) 9, 336, 383, 920
MboI GATC 4 cut(s) 7, 334, 381, 918
MboII GAAGA 6 cut(s) 41, 126, 656, 695, 764, 859
MlsI TGGCCA 1 cut(s) 1036
MluCI AATT 6 cut(s) 268, 652, 718, 819, 936, 1030
MluNI TGGCCA 1 cut(s) 1036
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 5 cut(s) 462, 540, 718, 843, 919
Mox20I TGGCCA 1 cut(s) 1036
MscI TGGCCA 1 cut(s) 1036
MseI TTAA 3 cut(s) 234, 690, 870
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 1036
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 2 cut(s) 376, 844
MvaI CCWGG 2 cut(s) 376, 844
MwoI GCNNNNNNNGC 2 cut(s) 995, 1004
NdeII GATC 4 cut(s) 7, 334, 381, 918
NlaIII CATG 6 cut(s) 161, 450, 546, 841, 973, 1041
NlaIV GGNNCC 2 cut(s) 47, 48
PfeI GAWTC 6 cut(s) 117, 257, 355, 539, 590, 1022
PflMI CCANNNNNTGG 1 cut(s) 843
PfoI TCCNGGA 1 cut(s) 842
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
PpuMI RGGWCCY 1 cut(s) 46
PsiI TTATAA 1 cut(s) 267
Psp1406I AACGTT 1 cut(s) 694
Psp5II RGGWCCY 1 cut(s) 46
Psp6I CCWGG 2 cut(s) 374, 842
PspFI CCCAGC 1 cut(s) 49
PspGI CCWGG 2 cut(s) 374, 842
PspN4I GGNNCC 2 cut(s) 47, 48
PspPI GGNCC 1 cut(s) 46
PspPPI RGGWCCY 1 cut(s) 46
RsaI GTAC 3 cut(s) 243, 854, 992
RsaNI GTAC 3 cut(s) 242, 853, 991
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 3 cut(s) 234, 690, 870
Sau3AI GATC 4 cut(s) 7, 334, 381, 918
Sau96I GGNCC 1 cut(s) 46
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 376, 844
SetI ASST 8 cut(s) 145, 380, 419, 458, 473, 515, 697, 854
SexAI ACCWGGT 1 cut(s) 374
SfaNI GCATC 1 cut(s) 207
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 46
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 466
SmoI CTYRAG 1 cut(s) 466
SpeI ACTAGT 1 cut(s) 1115
Sse9I AATT 6 cut(s) 268, 652, 718, 819, 936, 1030
SsiI CCGC 1 cut(s) 834
SspMI CTAG 4 cut(s) 42, 414, 425, 1116
StyD4I CCNGG 2 cut(s) 374, 842
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 4 cut(s) 75, 184, 900, 952
TaiI ACGT 1 cut(s) 697
TaqI TCGA 2 cut(s) 921, 947
TasI AATT 6 cut(s) 268, 652, 718, 819, 936, 1030
TatI WGTACW 1 cut(s) 241
TfiI GAWTC 6 cut(s) 117, 257, 355, 539, 590, 1022
Tru1I TTAA 3 cut(s) 234, 690, 870
Tru9I TTAA 3 cut(s) 234, 690, 870
TscAI CASTG 2 cut(s) 308, 541
TspDTI ATGAA 3 cut(s) 531, 657, 777
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 2 cut(s) 308, 541
Van91I CCANNNNNTGG 1 cut(s) 843
VpaK11BI GGWCC 1 cut(s) 46
XagI CCTNNNNNAGG 1 cut(s) 847
XapI RAATTY 1 cut(s) 652
XspI CTAG 4 cut(s) 42, 414, 425, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.