AT1G77650

F-box only protein 15

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
29181110 .. 29182261
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77650.1

Sequence Viewer

Length: 1152 bp
ATGGCTTTTTTATCGCTGCCTTCTGATGTAGTAGAAGAATTCCTTTTCAAGACTCCTATTGAATCGTTGGTACTATGCAAACCAACCTGCAAACAATTGTACGCTCTCTGCAACGACAAGAGATTCATTTACAATCACTTGGATCTCTCCGAGGAACGATTGATGCGAATTTATCTTGATAAGATTAAAATCATTAATCCGGTAACCCTAGATATCTTATGTCTACCAGTACCAGCCGAGTTTGATTCTGTCACTTTTAATGTTATTCATTGCGATGGATTATTGCTATGTCGATGGACCACAAGAGGACTAGATCGGTACAACAAACTTGCAGTTTGGAATCCGATTTCGGGCCAACTCAAATTTGTTGAATCCTTTTTTCACGGTGTAACTGATCTATACGGTTTCGGATACGCTAATAATGGACCCCGTGACAGTTACAAGATTTTGAGGGTTAGTTATTGGCGTAAGGAATGCGAGATATATGACTTAAAATCTAAACTCTGGAGAGCTTTTTCCGCTACTTTGGATTGGGTTGTAAATACGCCACAACAAAATGTGTTTATGAATGGAAATATGTATTGGATTGCTGATACGTTGGGTGATAATATTCGAGAAACCTTCATACAGAGTTTTGATTTTTCCAAGGAGACATTCAAACCCATATGTTCGTTCCCCTATGAGAATAAGATTATTGACACACTTATAATGAATGGTATACATAGGATTGCTGATTCAGTTATCCTTTCAAGTTTCAGAGTAGATAGGCTTTCTTTGTTTCGTCAACAACGCCTTGAAGATAAAAAATATGAGATGGAGGTTTGGGTCACAAACAAGGTGACTGATGAGGTTGTCTCATGGACTAAGTATTTTAATGTGACTCACCACCCTGATCTCCCCATCTTAAATCCCTATCTCTTCACATACATGCGTGTTCCTACATTCTTCATCCACGAGACCAATTCTATCATGTTATGGTGCGATAAAGCTGCTGGAAAGGGTTTTGCTTGTACGAGCTTTTACGAAATTGGTGATCAGGGTGAGGTCAAACATCAACTTGAGACAAGAAAACGTTTTAGAGCTAACGGTGAACGTAACTCTTGTGTTTCCAGCTGTGTTTACGTTCCAAGTCTGGTTCCCATTCCAGAGTAA

Protein Analysis

383

Amino Acids

44.78

Weight (kDa)

6.71

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 56 - 381 4.7e-73 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
Acc36I ACCTGC 1 cut(s) 95
AccI GTMKAC 2 cut(s) 223, 718
AciI CCGC 1 cut(s) 519
AclI AACGTT 1 cut(s) 1072
AclWI GGATC 1 cut(s) 150
AcsI RAATTY 3 cut(s) 38, 168, 362
AfaI GTAC 5 cut(s) 72, 101, 231, 320, 1012
AfiI CCNNNNNNNGG 1 cut(s) 350
AgsI TTSAA 6 cut(s) 49, 62, 371, 658, 750, 797
AjuI GAANNNNNNNTTGG 4 cut(s) 565, 597, 638, 670
AluBI AGCT 5 cut(s) 512, 989, 1017, 1082, 1113
AluI AGCT 5 cut(s) 512, 989, 1017, 1082, 1113
Alw26I GTCTC 4 cut(s) 644, 859, 950, 1055
AlwI GGATC 1 cut(s) 150
AoxI GGCC 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 16, 989
ApoI RAATTY 3 cut(s) 38, 168, 362
AseI ATTAAT 1 cut(s) 195
AspS9I GGNCC 3 cut(s) 297, 352, 425
AsuHPI GGTGA 6 cut(s) 614, 850, 875, 1043, 1052, 1100
AvaII GGWCC 2 cut(s) 297, 425
BauI CACGAG 1 cut(s) 953
BbvI GCAGC 2 cut(s) 3, 976
BccI CCATC 4 cut(s) 269, 288, 808, 908
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciVI GTATCC 1 cut(s) 404
BclI TGATCA 1 cut(s) 1033
BcoDI GTCTC 4 cut(s) 644, 859, 950, 1055
BfaI CTAG 2 cut(s) 209, 311
BfuAI ACCTGC 1 cut(s) 95
BfuI GTATCC 1 cut(s) 404
BisI GCNGC 2 cut(s) 17, 990
BlsI GCNGC 2 cut(s) 18, 991
Bme18I GGWCC 2 cut(s) 297, 425
BmgT120I GGNCC 3 cut(s) 297, 352, 425
BmiI GGNNCC 2 cut(s) 427, 1137
BmsI GCATC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 839, 871
BpmI CTGGAG 1 cut(s) 526
BpuEI CTTGAG 1 cut(s) 1079
BsaBI GATNNNNATC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 950
BsaJI CCNNGG 2 cut(s) 150, 645
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 268
Bse8I GATNNNNATC 1 cut(s) 188
BseDI CCNNGG 2 cut(s) 150, 645
BseGI GGATG 1 cut(s) 948
BseJI GATNNNNATC 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 350
BseMI GCAATG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 3, 976
BshFI GGCC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 350
BsmAI GTCTC 4 cut(s) 644, 859, 950, 1055
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 1 cut(s) 354
Bso31I GGTCTC 1 cut(s) 950
Bsp143I GATC 5 cut(s) 142, 313, 394, 892, 1033
BspACI CCGC 1 cut(s) 519
BspANI GGCC 1 cut(s) 354
BspLI GGNNCC 2 cut(s) 427, 1137
BspMI ACCTGC 1 cut(s) 95
BspPI GGATC 1 cut(s) 150
BspTNI GGTCTC 1 cut(s) 950
BsrDI GCAATG 1 cut(s) 268
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 150, 645
BssMI GATC 5 cut(s) 142, 313, 394, 892, 1033
BssNAI GTATAC 1 cut(s) 719
BssSI CACGAG 1 cut(s) 953
BssT1I CCWWGG 1 cut(s) 645
Bst1107I GTATAC 1 cut(s) 719
Bst2BI CACGAG 1 cut(s) 953
Bst4CI ACNGT 4 cut(s) 386, 404, 437, 1088
Bst6I CTCTTC 1 cut(s) 923
BstDEI CTNAG 1 cut(s) 864
BstEII GGTNACC 1 cut(s) 202
BstF5I GGATG 1 cut(s) 948
BstKTI GATC 5 cut(s) 145, 316, 397, 895, 1036
BstMAI GTCTC 4 cut(s) 644, 859, 950, 1055
BstMBI GATC 5 cut(s) 142, 313, 394, 892, 1033
BstMWI GCNNNNNNNGC 1 cut(s) 518
BstNSI RCATGY 1 cut(s) 931
BstPI GGTNACC 1 cut(s) 202
BstV1I GCAGC 2 cut(s) 3, 976
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BstZ17I GTATAC 1 cut(s) 719
BsuI GTATCC 1 cut(s) 404
BsuRI GGCC 1 cut(s) 354
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 1 cut(s) 948
BveI ACCTGC 1 cut(s) 95
Cfr13I GGNCC 3 cut(s) 297, 352, 425
Csp6I GTAC 5 cut(s) 71, 100, 230, 319, 1011
CviAII CATG 3 cut(s) 858, 928, 970
CviJI RGCY 9 cut(s) 5, 236, 354, 512, 769, 989, 1017, 1082, 1113
CviKI_1 RGCY 9 cut(s) 5, 236, 354, 512, 769, 989, 1017, 1082, 1113
CviQI GTAC 5 cut(s) 71, 100, 230, 319, 1011
DdeI CTNAG 1 cut(s) 864
DpnI GATC 5 cut(s) 144, 315, 396, 894, 1035
DpnII GATC 5 cut(s) 142, 313, 394, 892, 1033
Eam1104I CTCTTC 1 cut(s) 923
EarI CTCTTC 1 cut(s) 923
Eco130I CCWWGG 1 cut(s) 645
Eco31I GGTCTC 1 cut(s) 950
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 297, 425
Eco91I GGTNACC 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 202
EcoRI GAATTC 1 cut(s) 38
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 1 cut(s) 645
ErhI CCWWGG 1 cut(s) 645
FaeI CATG 3 cut(s) 861, 931, 973
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 3 cut(s) 857, 927, 969
FauNDI CATATG 1 cut(s) 665
FbaI TGATCA 1 cut(s) 1033
FblI GTMKAC 2 cut(s) 223, 718
Fnu4HI GCNGC 2 cut(s) 17, 990
FokI GGATG 1 cut(s) 935
Fsp4HI GCNGC 2 cut(s) 17, 990
FspBI CTAG 2 cut(s) 209, 311
GluI GCNGC 2 cut(s) 17, 990
GsuI CTGGAG 1 cut(s) 526
HaeIII GGCC 1 cut(s) 354
HapII CCGG 1 cut(s) 200
Hin1II CATG 3 cut(s) 861, 931, 973
HincII GTYRAC 1 cut(s) 785
HindII GTYRAC 1 cut(s) 785
HinfI GANTC 8 cut(s) 52, 62, 123, 245, 340, 371, 734, 880
HpaII CCGG 1 cut(s) 200
HphI GGTGA 6 cut(s) 614, 850, 875, 1043, 1052, 1100
Hpy166II GTNNAC 5 cut(s) 224, 719, 785, 1091, 1120
Hpy188I TCNGA 5 cut(s) 25, 151, 345, 410, 758
Hpy188III TCNNGA 5 cut(s) 49, 176, 505, 614, 1145
Hpy8I GTNNAC 5 cut(s) 224, 719, 785, 1091, 1120
HpyAV CCTTC 2 cut(s) 30, 631
HpyCH4III ACNGT 4 cut(s) 386, 404, 437, 1088
HpyCH4IV ACGT 4 cut(s) 596, 1072, 1093, 1122
HpyCH4V TGCA 4 cut(s) 78, 90, 111, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 518
HpyF3I CTNAG 1 cut(s) 864
HpySE526I ACGT 4 cut(s) 596, 1072, 1093, 1122
Hsp92II CATG 3 cut(s) 861, 931, 973
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 5 cut(s) 142, 313, 394, 892, 1033
Lsp1109I GCAGC 2 cut(s) 3, 976
LweI GCATC 1 cut(s) 153
MaeI CTAG 2 cut(s) 209, 311
MaeII ACGT 4 cut(s) 596, 1072, 1093, 1122
MaeIII GTNAC 9 cut(s) 202, 250, 388, 431, 437, 826, 838, 877, 1094
MalI GATC 5 cut(s) 144, 315, 396, 894, 1035
MboI GATC 5 cut(s) 142, 313, 394, 892, 1033
MboII GAAGA 4 cut(s) 47, 809, 910, 937
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 1 cut(s) 142
MluCI AATT 6 cut(s) 38, 95, 168, 362, 961, 1026
MlyI GAGTC 2 cut(s) 46, 874
MnlI CCTC 6 cut(s) 145, 299, 444, 811, 841, 1036
MseI TTAA 6 cut(s) 186, 195, 258, 491, 873, 905
MslI CAYNNNNRTG 2 cut(s) 273, 926
MspA1I CMGCKG 1 cut(s) 1113
MspI CCGG 1 cut(s) 200
MunI CAATTG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 479
MwoI GCNNNNNNNGC 1 cut(s) 518
NdeI CATATG 1 cut(s) 665
NdeII GATC 5 cut(s) 142, 313, 394, 892, 1033
NlaIII CATG 3 cut(s) 861, 931, 973
NlaIV GGNNCC 2 cut(s) 427, 1137
NmeAIII GCCGAG 1 cut(s) 262
NmuCI GTSAC 5 cut(s) 250, 431, 826, 838, 877
NspI RCATGY 1 cut(s) 931
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 6 cut(s) 62, 123, 245, 340, 371, 734
PkrI GCNGC 2 cut(s) 18, 991
PleI GAGTC 2 cut(s) 46, 874
PpsI GAGTC 2 cut(s) 46, 874
PshBI ATTAAT 1 cut(s) 195
PsiI TTATAA 1 cut(s) 707
Psp1406I AACGTT 1 cut(s) 1072
PspEI GGTNACC 1 cut(s) 202
PspN4I GGNNCC 2 cut(s) 427, 1137
PspPI GGNCC 3 cut(s) 297, 352, 425
PsuI RGATCY 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 1113
RsaI GTAC 5 cut(s) 72, 101, 231, 320, 1012
RsaNI GTAC 5 cut(s) 71, 100, 230, 319, 1011
RseI CAYNNNNRTG 2 cut(s) 273, 926
SaqAI TTAA 6 cut(s) 186, 195, 258, 491, 873, 905
SatI GCNGC 2 cut(s) 17, 990
Sau3AI GATC 5 cut(s) 142, 313, 394, 892, 1033
Sau96I GGNCC 3 cut(s) 297, 352, 425
SchI GAGTC 2 cut(s) 46, 874
SfaNI GCATC 1 cut(s) 153
SinI GGWCC 2 cut(s) 297, 425
SmiMI CAYNNNNRTG 2 cut(s) 273, 926
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
Sse9I AATT 6 cut(s) 38, 95, 168, 362, 961, 1026
SsiI CCGC 1 cut(s) 519
SspI AATATT 1 cut(s) 610
SspMI CTAG 2 cut(s) 209, 311
StyI CCWWGG 1 cut(s) 645
TaaI ACNGT 4 cut(s) 386, 404, 437, 1088
TaiI ACGT 4 cut(s) 599, 1075, 1096, 1125
TaqI TCGA 2 cut(s) 292, 613
TasI AATT 6 cut(s) 38, 95, 168, 362, 961, 1026
TfiI GAWTC 6 cut(s) 62, 123, 245, 340, 371, 734
Tru1I TTAA 6 cut(s) 186, 195, 258, 491, 873, 905
Tru9I TTAA 6 cut(s) 186, 195, 258, 491, 873, 905
TseFI GTSAC 5 cut(s) 250, 431, 826, 838, 877
TseI GCWGC 2 cut(s) 16, 989
Tsp45I GTSAC 5 cut(s) 250, 431, 826, 838, 877
TspDTI ATGAA 6 cut(s) 115, 257, 581, 613, 725, 937
VpaK11BI GGWCC 2 cut(s) 297, 425
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 3 cut(s) 38, 168, 362
XceI RCATGY 1 cut(s) 931
XmiI GTMKAC 2 cut(s) 223, 718
XspI CTAG 2 cut(s) 209, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.