AT1G51320

Weak chloroplast movement under blue light

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000186
Physical Location & Seq
Forward (+)
19025642 .. 19026769
1128 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G51320.1

Sequence Viewer

Length: 1128 bp
ATGGTGTCGGTCAACCTTCCATGGGAATTAGTGGAAGAGATCCTATGTAGGGTTCCACCTCAATCTCTTGTTAAATTCAGAACCGTATGTAAGCAATGGAATTCTCTTTTCGATGATAATAAGTTTGTCAACGACCACTTTGTTCAATCACAACCACAATTAATCTTCCGAACCGAGTCTAAGATTTATTCGGTAGCCGTAAATTTCAAAGGTCCACGGATAGAGGTCCATGAGTTACCCTTAGCCATTCCTGGTTTGAAATCTGAGATGCCGATACGGCTACACGACTATGTTGATTGTGATGGCTTGTTGTTTTGTACTAGCTACTTTAACGGGGTCTTGATTTGGAACCCCTGGTTGAGACAAACTAGATTTTTCCCATCCATACATCGTTATCCAGTCACATATGACATAGGTTATGATAACAAAAAACAATACAAGATGCTCGATTATTATAAATGTGAAGGTGACTCATCAATAAAATCCATAATTTATGAGATTGGGTTATATTCAAAGAAAGTTAAAGATTTGGAGTCTGATAGTACTTGGTCAATTTTCCAATCAAATAGCGTATCTCTGAATGGAACTTTGTATTGGGCTGGTGTAGATGTTAACAATGGTATTTTCATTAGAAGCTTCAGTTTTTCAACAGAAAAACCAAGAACTTTTTGTAGTCTACCGTTTATGTACGATGACGACAATGTTCTAGCCCTTGCGGTTTTTAGGAAAGATCGTCTTTCATTGTTAAACTTATGCAATAAAACATCAGAGATAAAGATTTGGTTGACAAAGAATAATATCAATGATAGGGAGGTAGGATTAGAAGAGGACGTGGTGTGGATAAACCTCATGACAGTGTTAATACCTAATTTCCCTAAATTTTCATTTTATTGGTATAACCGTCCTGACCTAACTTACTTCCTCGACAACGATGATGCTAAGAGGCTTGTCATTTGTTGTTATGATGAAACTGATCAGGCTTACATCTACATTGTAAAAGGAGATATGTTCAAGAAAATCAAAATAGATCAGTATGAGGTTCTATCTGATTATTCTCGCCCGCACTTCCATACTTATATCCCCAGTTTGGTTCGGCCTTCCCGGGTCAAAGAGGACAACAAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box PPR_2 WEMBL

Protein Analysis

375

Amino Acids

44.21

Weight (kDa)

6.34

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 42 3.4e-11 F-box domain
F-box-like PF12937 5 - 40 2e-06 F-box-like
FBA_1 PF07734 54 - 365 8.8e-72 F-box associated beta propeller domain
FBA_3 PF08268 94 - 264 6.3e-11 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
AccI GTMKAC 1 cut(s) 676
AciI CCGC 2 cut(s) 716, 1061
AclWI GGATC 1 cut(s) 34
AcsI RAATTY 4 cut(s) 74, 100, 202, 878
AcuI CTGAAG 1 cut(s) 622
AfaI GTAC 3 cut(s) 319, 544, 689
AfiI CCNNNNNNNGG 3 cut(s) 22, 49, 1087
AgsI TTSAA 6 cut(s) 146, 208, 259, 513, 648, 1012
AjiI CACGTC 1 cut(s) 832
AjnI CCWGG 2 cut(s) 250, 353
AjuI GAANNNNNNNTTGG 2 cut(s) 577, 609
AluBI AGCT 2 cut(s) 324, 636
AluI AGCT 2 cut(s) 324, 636
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 1 cut(s) 34
Ama87I CYCGRG 1 cut(s) 1101
AoxI GGCC 1 cut(s) 1094
ApoI RAATTY 4 cut(s) 74, 100, 202, 878
AseI ATTAAT 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 212, 226
AsuC2I CCSGG 2 cut(s) 1102, 1103
AsuHPI GGTGA 1 cut(s) 479
AvaI CYCGRG 1 cut(s) 1101
AvaII GGWCC 2 cut(s) 212, 226
BccI CCATC 2 cut(s) 296, 388
BceAI ACGGC 2 cut(s) 182, 293
BciT130I CCWGG 2 cut(s) 252, 355
BclI TGATCA 1 cut(s) 973
BcnI CCSGG 2 cut(s) 1102, 1103
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 3 cut(s) 321, 369, 707
BglI GCCNNNNNGGC 1 cut(s) 277
BmcAI AGTACT 1 cut(s) 544
Bme1390I CCNGG 4 cut(s) 252, 355, 1102, 1103
Bme18I GGWCC 2 cut(s) 212, 226
BmeT110I CYCGRG 1 cut(s) 1101
BmgBI CACGTC 1 cut(s) 832
BmgT120I GGNCC 2 cut(s) 212, 226
BmiI GGNNCC 2 cut(s) 54, 350
BmrFI CCNGG 4 cut(s) 252, 355, 1102, 1103
BmrI ACTGGG 1 cut(s) 1077
BmsI GCATC 3 cut(s) 258, 432, 925
BmuI ACTGGG 1 cut(s) 1077
Bpu10I CCTNAGC 1 cut(s) 241
BpuMI CCSGG 2 cut(s) 1102, 1103
BsaJI CCNNGG 4 cut(s) 20, 215, 353, 1101
Bsc4I CCNNNNNNNGG 3 cut(s) 22, 49, 1087
Bse1I ACTGG 2 cut(s) 398, 1083
Bse3DI GCAATG 1 cut(s) 101
BseBI CCWGG 2 cut(s) 252, 355
BseDI CCNNGG 4 cut(s) 20, 215, 353, 1101
BseGI GGATG 1 cut(s) 380
BseLI CCNNNNNNNGG 3 cut(s) 22, 49, 1087
BseMI GCAATG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 398, 1083
BshFI GGCC 1 cut(s) 1096
BsiHKCI CYCGRG 1 cut(s) 1101
BsiSI CCGG 1 cut(s) 1102
BslI CCNNNNNNNGG 3 cut(s) 22, 49, 1087
BsmAI GTCTC 1 cut(s) 355
BsnI GGCC 1 cut(s) 1096
BsoBI CYCGRG 1 cut(s) 1101
Bsp143I GATC 4 cut(s) 39, 730, 973, 1027
Bsp19I CCATGG 1 cut(s) 20
BspACI CCGC 2 cut(s) 716, 1061
BspANI GGCC 1 cut(s) 1096
BspCNI CTCAG 1 cut(s) 256
BspHI TCATGA 1 cut(s) 849
BspLI GGNNCC 2 cut(s) 54, 350
BspPI GGATC 1 cut(s) 34
BsrDI GCAATG 1 cut(s) 101
BsrI ACTGG 2 cut(s) 398, 1083
BssECI CCNNGG 4 cut(s) 20, 215, 353, 1101
BssMI GATC 4 cut(s) 39, 730, 973, 1027
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 252, 355
Bst4CI ACNGT 4 cut(s) 85, 681, 856, 902
Bst6I CTCTTC 2 cut(s) 30, 819
BstC8I GCNNGC 1 cut(s) 1061
BstDEI CTNAG 4 cut(s) 180, 241, 264, 939
BstDSI CCRYGG 2 cut(s) 20, 215
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 4 cut(s) 42, 733, 976, 1030
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 4 cut(s) 39, 730, 973, 1027
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstNI CCWGG 2 cut(s) 252, 355
BstSCI CCNGG 4 cut(s) 250, 353, 1100, 1101
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BsuRI GGCC 1 cut(s) 1096
BtgI CCRYGG 2 cut(s) 20, 215
BtrI CACGTC 1 cut(s) 832
BtsCI GGATG 1 cut(s) 380
BtsIMutI CAGTG 1 cut(s) 861
Cac8I GCNNGC 1 cut(s) 1061
CciI TCATGA 1 cut(s) 849
Cfr13I GGNCC 2 cut(s) 212, 226
Cfr9I CCCGGG 1 cut(s) 1101
Csp6I GTAC 3 cut(s) 318, 543, 688
CviAII CATG 3 cut(s) 21, 230, 850
CviQI GTAC 3 cut(s) 318, 543, 688
DdeI CTNAG 4 cut(s) 180, 241, 264, 939
DpnI GATC 4 cut(s) 41, 732, 975, 1029
DpnII GATC 4 cut(s) 39, 730, 973, 1027
Eam1104I CTCTTC 2 cut(s) 30, 819
EarI CTCTTC 2 cut(s) 30, 819
Eco130I CCWWGG 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 212, 226
Eco57I CTGAAG 1 cut(s) 622
Eco88I CYCGRG 1 cut(s) 1101
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 250, 353
EcoT14I CCWWGG 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 3 cut(s) 24, 233, 853
FalI AAGNNNNNCTT 2 cut(s) 720, 752
FatI CATG 3 cut(s) 20, 229, 849
FauI CCCGC 1 cut(s) 1068
FauNDI CATATG 1 cut(s) 406
FbaI TGATCA 1 cut(s) 973
FblI GTMKAC 1 cut(s) 676
FokI GGATG 1 cut(s) 367
FspBI CTAG 3 cut(s) 321, 369, 707
HaeIII GGCC 1 cut(s) 1096
HapII CCGG 1 cut(s) 1102
Hin1II CATG 3 cut(s) 24, 233, 853
HincII GTYRAC 4 cut(s) 13, 130, 613, 786
HindII GTYRAC 4 cut(s) 13, 130, 613, 786
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 3 cut(s) 176, 470, 533
HpaI GTTAAC 1 cut(s) 613
HpaII CCGG 1 cut(s) 1102
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 6 cut(s) 13, 130, 215, 613, 677, 786
Hpy188I TCNGA 7 cut(s) 80, 170, 265, 538, 579, 769, 1048
Hpy188III TCNNGA 4 cut(s) 340, 850, 905, 1012
Hpy8I GTNNAC 6 cut(s) 13, 130, 215, 613, 677, 786
HpyAV CCTTC 3 cut(s) 26, 458, 1107
HpyCH4III ACNGT 4 cut(s) 85, 681, 856, 902
HpyCH4IV ACGT 1 cut(s) 831
HpyCH4V TGCA 1 cut(s) 756
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 4 cut(s) 180, 241, 264, 939
HpySE526I ACGT 1 cut(s) 831
Hsp92II CATG 3 cut(s) 24, 233, 853
Ksp22I TGATCA 1 cut(s) 973
KspAI GTTAAC 1 cut(s) 613
Kzo9I GATC 4 cut(s) 39, 730, 973, 1027
LweI GCATC 3 cut(s) 258, 432, 925
MaeI CTAG 3 cut(s) 321, 369, 707
MaeII ACGT 1 cut(s) 831
MaeIII GTNAC 3 cut(s) 234, 400, 467
MalI GATC 4 cut(s) 41, 732, 975, 1029
MboI GATC 4 cut(s) 39, 730, 973, 1027
MboII GAAGA 3 cut(s) 47, 157, 836
MflI RGATCY 1 cut(s) 39
MlyI GAGTC 3 cut(s) 185, 464, 542
MnlI CCTC 9 cut(s) 69, 217, 805, 820, 857, 932, 936, 1030, 1105
MseI TTAA 8 cut(s) 72, 161, 330, 522, 612, 746, 860, 1126
MslI CAYNNNNRTG 2 cut(s) 288, 854
MspI CCGG 1 cut(s) 1102
MspR9I CCNGG 4 cut(s) 252, 355, 1102, 1103
MvaI CCWGG 2 cut(s) 252, 355
MwoI GCNNNNNNNGC 1 cut(s) 277
NciI CCSGG 2 cut(s) 1102, 1103
NcoI CCATGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 406
NdeII GATC 4 cut(s) 39, 730, 973, 1027
NlaIII CATG 3 cut(s) 24, 233, 853
NlaIV GGNNCC 2 cut(s) 54, 350
NmuCI GTSAC 2 cut(s) 400, 467
PagI TCATGA 1 cut(s) 849
PleI GAGTC 3 cut(s) 184, 464, 541
PpsI GAGTC 3 cut(s) 184, 464, 541
PshBI ATTAAT 1 cut(s) 161
PsiI TTATAA 1 cut(s) 456
Psp6I CCWGG 2 cut(s) 250, 353
PspGI CCWGG 2 cut(s) 250, 353
PspN4I GGNNCC 2 cut(s) 54, 350
PspPI GGNCC 2 cut(s) 212, 226
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 3 cut(s) 319, 544, 689
RsaNI GTAC 3 cut(s) 318, 543, 688
RseI CAYNNNNRTG 2 cut(s) 288, 854
SaqAI TTAA 8 cut(s) 72, 161, 330, 522, 612, 746, 860, 1126
Sau3AI GATC 4 cut(s) 39, 730, 973, 1027
Sau96I GGNCC 2 cut(s) 212, 226
ScaI AGTACT 1 cut(s) 544
SchI GAGTC 3 cut(s) 185, 464, 542
ScrFI CCNGG 4 cut(s) 252, 355, 1102, 1103
SfaNI GCATC 3 cut(s) 258, 432, 925
SinI GGWCC 2 cut(s) 212, 226
SmaI CCCGGG 1 cut(s) 1103
SmiMI CAYNNNNRTG 2 cut(s) 288, 854
SsiI CCGC 2 cut(s) 716, 1061
SspMI CTAG 3 cut(s) 321, 369, 707
StyD4I CCNGG 4 cut(s) 250, 353, 1100, 1101
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 4 cut(s) 85, 681, 856, 902
TaiI ACGT 1 cut(s) 834
TaqI TCGA 3 cut(s) 111, 447, 924
TatI WGTACW 2 cut(s) 317, 542
Tru1I TTAA 8 cut(s) 72, 161, 330, 522, 612, 746, 860, 1126
Tru9I TTAA 8 cut(s) 72, 161, 330, 522, 612, 746, 860, 1126
TscAI CASTG 1 cut(s) 861
TseFI GTSAC 2 cut(s) 400, 467
Tsp45I GTSAC 2 cut(s) 400, 467
TspDTI ATGAA 4 cut(s) 616, 729, 873, 981
TspGWI ACGGA 1 cut(s) 232
TspMI CCCGGG 1 cut(s) 1101
TspRI CASTG 1 cut(s) 861
VpaK11BI GGWCC 2 cut(s) 212, 226
VspI ATTAAT 1 cut(s) 161
XapI RAATTY 4 cut(s) 74, 100, 202, 878
XmaI CCCGGG 1 cut(s) 1101
XmiI GTMKAC 1 cut(s) 676
XspI CTAG 3 cut(s) 321, 369, 707
ZrmI AGTACT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.