AT4G05080

ABC transporter E family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0000186
Physical Location & Seq
Forward (+)
2603001 .. 2604176
1176 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G05080.1

Sequence Viewer

Length: 1176 bp
ATGACGATGATGTTCGATCTTACGCAGGATTTGGTGAAAGAGATATTGTCTAGGGTTCCGATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAAAGATCGGATTCTATGTAAAGCAAAACCAAAACAGCAGTTTCATCAAGGGTTCATGCTGTCTGATTATAGGCTTCGTTCAATGAGGTTCAATATCTCTGGAACCTTCAAGGAAAATGGTGAAGAATTCGTTAACTTATCAGTAAAGGAGATTGGTAATTTTCTTAATAAAGTTGAGATATCTCATATGTATTACTGCGGCGGTATATTGTTATGTGTCACCACGGATACTAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAGGTGGATCCAACTCAAAACAGAAACTATGTATTCCACGTTTTGTCTCAGATATGACAACAACAAAAACCACAAGATATTGAGGTTTCTCGATAATAAACAGGGCTCATACGAAATTTACGATTTGAAGTCTTATTCATGGAGGGCTTTTGATGTCATTCCCAAGTGGGATATAGATGATGATGGGCAGAGTGCATCGGTAAAGGGAAATACTTACTTTAGGACGATAGATGAAACCCCAAATTTACTAATCTGTTTTGATTTTACGGCAGAAAGATTTGGAAAGCTTCTTGATCCACCTTTTCAGCATGGTTGGATGAGTCTATCCTGGGTTAGAGAAGAGAAACTCGTAGCCTTATATCAGCACTTGGATACATCTATGATAGAGATTTGGATTACTACTAAGATAGAGCCCAATGCACTATCGTGGACCTCCTTCTTAAAATGTTATATTGAGCAACTCATTGCTCTTGATTTTTGGTTTGATATAGATTACAACAATTTCTTCATTGACGAGGAGAAGAAACTCGCGGTGGTTATTGATAAAGTCGAATCTGAAGACTGCAAAAGATCTAATTCTCACATCAATTCTTACATCATTGGAGATGATGGCTACTTGAAAAAAATGAATAGTCTTGGAAACACTGCAAGATCTTATACCGCAATTATGTTATCTAGCTGTTACGTTTCAAGTTTAGTGCAAATTGATGATCCCATTGCAAGACGCAGAAGAAGAGAGAGGAACAGCAAACGAAAAGAGAAGAAGAGGAAGGGAACCACCAACAACAAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC_tran F-box FBA_1 Fer4 RLI

Protein Analysis

391

Amino Acids

45.84

Weight (kDa)

8.85

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 5 - 43 9.6e-07 F-box domain
FBA_1 PF07734 55 - 362 1.3e-88 F-box associated beta propeller domain
FBA_3 PF08268 99 - 262 7.7e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 911
AciI CCGC 4 cut(s) 312, 315, 911, 1041
AclWI GGATC 5 cut(s) 78, 382, 395, 668, 1085
AcsI RAATTY 3 cut(s) 239, 495, 622
AcuI CTGAAG 1 cut(s) 957
AfiI CCNNNNNNNGG 3 cut(s) 120, 370, 371
AgsI TTSAA 6 cut(s) 195, 205, 223, 508, 1000, 1071
AjnI CCWGG 1 cut(s) 707
AjuI GAANNNNNNNTTGG 2 cut(s) 353, 385
AleI CACNNNNGTG 1 cut(s) 805
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 2 cut(s) 667, 1059
AluI AGCT 2 cut(s) 667, 1059
Alw26I GTCTC 1 cut(s) 431
AlwI GGATC 5 cut(s) 78, 382, 395, 668, 1085
ApoI RAATTY 3 cut(s) 239, 495, 622
AspA2I CCTAGG 1 cut(s) 70
AspS9I GGNCC 1 cut(s) 810
AsuHPI GGTGA 3 cut(s) 46, 245, 325
AvaII GGWCC 1 cut(s) 810
AvrII CCTAGG 1 cut(s) 70
BamHI GGATCC 1 cut(s) 387
BanII GRGCYC 2 cut(s) 488, 795
BauI CACGAG 1 cut(s) 350
BbsI GAAGAC 1 cut(s) 945
BccI CCATC 3 cut(s) 93, 557, 983
BceAI ACGGC 1 cut(s) 663
BciT130I CCWGG 1 cut(s) 709
BciVI GTATCC 2 cut(s) 334, 745
BcoDI GTCTC 1 cut(s) 431
BfaI CTAG 4 cut(s) 51, 71, 345, 1056
BfuI GTATCC 2 cut(s) 334, 745
BglII AGATCT 2 cut(s) 950, 1031
BisI GCNGC 1 cut(s) 313
BlnI CCTAGG 1 cut(s) 70
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 709
Bme18I GGWCC 1 cut(s) 810
BmgT120I GGNCC 1 cut(s) 810
BmiI GGNNCC 5 cut(s) 57, 217, 362, 389, 1156
BmrFI CCNGG 1 cut(s) 709
BmsI GCATC 1 cut(s) 584
BpiI GAAGAC 1 cut(s) 945
BsaJI CCNNGG 3 cut(s) 70, 336, 708
Bsc4I CCNNNNNNNGG 3 cut(s) 120, 370, 371
Bse3DI GCAATG 2 cut(s) 843, 1095
BseBI CCWGG 1 cut(s) 709
BseDI CCNNGG 3 cut(s) 70, 336, 708
BseGI GGATG 2 cut(s) 104, 702
BseLI CCNNNNNNNGG 3 cut(s) 120, 370, 371
BseMI GCAATG 2 cut(s) 843, 1095
BseMII CTCAG 1 cut(s) 442
BseRI GAGGAG 1 cut(s) 911
Bsh1236I CGCG 1 cut(s) 911
BslI CCNNNNNNNGG 3 cut(s) 120, 370, 371
BsmAI GTCTC 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 488, 795
Bsp143I GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
BspACI CCGC 4 cut(s) 312, 315, 911, 1041
BspCNI CTCAG 1 cut(s) 441
BspFNI CGCG 1 cut(s) 911
BspLI GGNNCC 5 cut(s) 57, 217, 362, 389, 1156
BspPI GGATC 5 cut(s) 78, 382, 395, 668, 1085
BsrDI GCAATG 2 cut(s) 843, 1095
BssECI CCNNGG 3 cut(s) 70, 336, 708
BssMI GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 1 cut(s) 70
Bst2BI CACGAG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 709
Bst6I CTCTTC 3 cut(s) 714, 1108, 1139
BstDEI CTNAG 2 cut(s) 428, 783
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 104, 702
BstFNI CGCG 1 cut(s) 911
BstKTI GATC 8 cut(s) 19, 86, 121, 390, 676, 953, 1034, 1093
BstMAI GTCTC 1 cut(s) 431
BstMBI GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
BstNI CCWGG 1 cut(s) 709
BstSCI CCNGG 1 cut(s) 707
BstUI CGCG 1 cut(s) 911
BstV2I GAAGAC 1 cut(s) 945
BstX2I RGATCY 4 cut(s) 83, 387, 950, 1031
BstYI RGATCY 4 cut(s) 83, 387, 950, 1031
BsuI GTATCC 2 cut(s) 334, 745
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 2 cut(s) 104, 702
BtsI GCAGTG 2 cut(s) 84, 1023
BtsIMutI CAGTG 2 cut(s) 84, 1023
Cfr13I GGNCC 1 cut(s) 810
CseI GACGC 1 cut(s) 1113
CspCI CAANNNNNGTGG 2 cut(s) 365, 400
CviAII CATG 3 cut(s) 169, 519, 689
CviJI RGCY 9 cut(s) 187, 349, 486, 527, 667, 734, 793, 993, 1059
CviKI_1 RGCY 9 cut(s) 187, 349, 486, 527, 667, 734, 793, 993, 1059
DdeI CTNAG 2 cut(s) 428, 783
DpnI GATC 8 cut(s) 18, 85, 120, 389, 675, 952, 1033, 1092
DpnII GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
Eam1104I CTCTTC 3 cut(s) 714, 1108, 1139
EarI CTCTTC 3 cut(s) 714, 1108, 1139
Eco130I CCWWGG 1 cut(s) 70
Eco24I GRGCYC 2 cut(s) 488, 795
Eco32I GATATC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 810
Eco57I CTGAAG 1 cut(s) 957
EcoRI GAATTC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 707
EcoRV GATATC 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 70
EcoT38I GRGCYC 2 cut(s) 488, 795
ErhI CCWWGG 1 cut(s) 70
FaeI CATG 3 cut(s) 172, 522, 692
FatI CATG 3 cut(s) 168, 518, 688
FauNDI CATATG 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 313
FokI GGATG 2 cut(s) 111, 709
FriOI GRGCYC 2 cut(s) 488, 795
Fsp4HI GCNGC 1 cut(s) 313
FspBI CTAG 4 cut(s) 51, 71, 345, 1056
GluI GCNGC 1 cut(s) 313
HgaI GACGC 1 cut(s) 1113
Hin1II CATG 3 cut(s) 172, 522, 692
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 3 cut(s) 124, 700, 932
HpaI GTTAAC 1 cut(s) 247
HphI GGTGA 3 cut(s) 46, 245, 325
Hpy166II GTNNAC 2 cut(s) 247, 810
Hpy188I TCNGA 5 cut(s) 60, 123, 178, 431, 937
Hpy188III TCNNGA 5 cut(s) 213, 352, 470, 671, 851
Hpy8I GTNNAC 2 cut(s) 247, 810
HpyAV CCTTC 3 cut(s) 229, 826, 1144
HpyCH4IV ACGT 2 cut(s) 419, 1065
HpyCH4V TGCA 7 cut(s) 93, 575, 800, 945, 1028, 1081, 1100
HpyF3I CTNAG 2 cut(s) 428, 783
HpySE526I ACGT 2 cut(s) 419, 1065
Hsp92II CATG 3 cut(s) 172, 522, 692
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 6 cut(s) 11, 198, 367, 467, 694, 721
LweI GCATC 1 cut(s) 584
MaeI CTAG 4 cut(s) 51, 71, 345, 1056
MaeII ACGT 2 cut(s) 419, 1065
MaeIII GTNAC 2 cut(s) 331, 1061
MalI GATC 8 cut(s) 18, 85, 120, 389, 675, 952, 1033, 1092
MboI GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
MboII GAAGA 9 cut(s) 248, 731, 877, 913, 950, 1122, 1125, 1153, 1156
MflI RGATCY 4 cut(s) 83, 387, 950, 1031
MhlI GDGCHC 2 cut(s) 488, 795
MluCI AATT 9 cut(s) 239, 271, 495, 622, 880, 955, 967, 1044, 1083
MlyI GAGTC 1 cut(s) 709
MmeI TCCRAC 2 cut(s) 415, 674
MnlI CCTC 7 cut(s) 192, 456, 516, 823, 889, 1113, 1140
MseI TTAA 3 cut(s) 246, 279, 821
MslI CAYNNNNRTG 1 cut(s) 805
MspR9I CCNGG 1 cut(s) 709
MvaI CCWGG 1 cut(s) 709
MvnI CGCG 1 cut(s) 911
NdeI CATATG 1 cut(s) 300
NdeII GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
NlaIII CATG 3 cut(s) 172, 522, 692
NlaIV GGNNCC 5 cut(s) 57, 217, 362, 389, 1156
NmuCI GTSAC 1 cut(s) 331
OliI CACNNNNGTG 1 cut(s) 805
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PfeI GAWTC 2 cut(s) 124, 932
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 708
PpsI GAGTC 1 cut(s) 708
Psp6I CCWGG 1 cut(s) 707
PspGI CCWGG 1 cut(s) 707
PspN4I GGNNCC 5 cut(s) 57, 217, 362, 389, 1156
PspPI GGNCC 1 cut(s) 810
PsuI RGATCY 4 cut(s) 83, 387, 950, 1031
RseI CAYNNNNRTG 1 cut(s) 805
SaqAI TTAA 3 cut(s) 246, 279, 821
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 8 cut(s) 16, 83, 118, 387, 673, 950, 1031, 1090
Sau96I GGNCC 1 cut(s) 810
SchI GAGTC 1 cut(s) 709
ScrFI CCNGG 1 cut(s) 709
SduI GDGCHC 2 cut(s) 488, 795
SfaNI GCATC 1 cut(s) 584
SinI GGWCC 1 cut(s) 810
SmiMI CAYNNNNRTG 1 cut(s) 805
Sse9I AATT 9 cut(s) 239, 271, 495, 622, 880, 955, 967, 1044, 1083
SsiI CCGC 4 cut(s) 312, 315, 911, 1041
SspMI CTAG 4 cut(s) 51, 71, 345, 1056
StyD4I CCNGG 1 cut(s) 707
StyI CCWWGG 1 cut(s) 70
TaiI ACGT 2 cut(s) 422, 1068
TaqI TCGA 3 cut(s) 15, 471, 930
TasI AATT 9 cut(s) 239, 271, 495, 622, 880, 955, 967, 1044, 1083
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 2 cut(s) 124, 932
Tru1I TTAA 3 cut(s) 246, 279, 821
Tru9I TTAA 3 cut(s) 246, 279, 821
TscAI CASTG 2 cut(s) 84, 1030
TseFI GTSAC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 331
TspDTI ATGAA 6 cut(s) 146, 157, 507, 627, 877, 1022
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 2 cut(s) 84, 1030
VpaK11BI GGWCC 1 cut(s) 810
XapI RAATTY 3 cut(s) 239, 495, 622
XmaJI CCTAGG 1 cut(s) 70
XspI CTAG 4 cut(s) 51, 71, 345, 1056
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.