AT1G25141

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
8817678 .. 8818395
718 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25141.1

Sequence Viewer

Length: 705 bp
ATGCGTCTGCGTCACCAAGGAGGACAATACTTGGCTCGCGGTATGGAACCCGTGTACTGGTCAAACAAGGTGGATTCAACCCATGACTTATATGACAACTATACTCTCGGATCCTACCAAAATAATAGCTACAATATATTGGCACACACTGGTTTTGGCTACGACCACGAATTCCAAATTTATGAAATTAACTCCAATTCATGGAGGATTATTGATGCCACTTTGGACTTCAAATTAGGGTATATTGGTCGTGGCGTGTCTTTGAAGGGAAAGACTTACTGGATTGCTAGTGGTGAAGAAGAGAAACGGCTTGGCAAATTCTTAATCAGTTTTGATTATACGACAGAAAGATTTGAACGTCTATGTCTTCCGAATAAGTATCCTTGTTATGCAACTCTGGCTCTATCCGTTGTTAGAGAAGAGAAACTTTCCATGTTATCGCAACGCGGAATTAAATCAAAGGCAGAAATATGGGTGACAAATAAGATTGGTGAGACACAAGTGGTGTCGTGGAGCATGGTCTTAGCTTTGGATTTGCAGCCTAAACGTTGTATTGGGGAAAGCGGAAGTTTCTTGGTCGACGAGAAGAAGAGAGTGGTCGTGTGTTGTGATAATATTAGAGACCAAGGAAAAACCACGGTACACATTTTTGGAGAGGACAACAAAGTGAAACAAGTGGGTTTTGAAGTCGGATCATCTCTGTAA

Protein Analysis

234

Amino Acids

26.8

Weight (kDa)

8.18

Isoelectric Point (pI)

31.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 25 - 230 6.6e-58 F-box associated beta propeller domain
FBA_3 PF08268 55 - 167 9.5e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AccI GTMKAC 1 cut(s) 579
AccII CGCG 2 cut(s) 39, 447
AciI CCGC 3 cut(s) 39, 447, 564
AclI AACGTT 1 cut(s) 547
AclWI GGATC 3 cut(s) 105, 118, 700
AcsI RAATTY 3 cut(s) 170, 177, 317
AfaI GTAC 2 cut(s) 56, 642
AfiI CCNNNNNNNGG 2 cut(s) 57, 201
AgsI TTSAA 5 cut(s) 78, 232, 265, 356, 686
AluBI AGCT 2 cut(s) 129, 527
AluI AGCT 2 cut(s) 129, 527
Alw26I GTCTC 2 cut(s) 488, 615
AlwI GGATC 3 cut(s) 105, 118, 700
ApeKI GCWGC 1 cut(s) 538
ApoI RAATTY 3 cut(s) 170, 177, 317
AsuHPI GGTGA 4 cut(s) 5, 305, 487, 503
BamHI GGATCC 1 cut(s) 110
BbsI GAAGAC 1 cut(s) 359
BbvI GCAGC 1 cut(s) 550
BceAI ACGGC 1 cut(s) 323
BciVI GTATCC 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 488, 615
BfaI CTAG 1 cut(s) 288
BfuI GTATCC 1 cut(s) 390
BisI GCNGC 1 cut(s) 539
BlsI GCNGC 1 cut(s) 540
BmiI GGNNCC 2 cut(s) 48, 112
BmsI GCATC 1 cut(s) 205
BpiI GAAGAC 1 cut(s) 359
BsaI GGTCTC 1 cut(s) 615
BsaJI CCNNGG 3 cut(s) 16, 625, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 57, 201
Bse1I ACTGG 3 cut(s) 62, 154, 284
BseDI CCNNGG 3 cut(s) 16, 625, 636
BseLI CCNNNNNNNGG 2 cut(s) 57, 201
BseNI ACTGG 3 cut(s) 62, 154, 284
BseXI GCAGC 1 cut(s) 550
Bsh1236I CGCG 2 cut(s) 39, 447
BslI CCNNNNNNNGG 2 cut(s) 57, 201
BsmAI GTCTC 2 cut(s) 488, 615
Bso31I GGTCTC 1 cut(s) 615
Bsp143I GATC 2 cut(s) 110, 692
BspACI CCGC 3 cut(s) 39, 447, 564
BspFNI CGCG 2 cut(s) 39, 447
BspLI GGNNCC 2 cut(s) 48, 112
BspPI GGATC 3 cut(s) 105, 118, 700
BspTNI GGTCTC 1 cut(s) 615
BsrI ACTGG 3 cut(s) 62, 154, 284
BssECI CCNNGG 3 cut(s) 16, 625, 636
BssMI GATC 2 cut(s) 110, 692
BssT1I CCWWGG 2 cut(s) 16, 625
Bst4CI ACNGT 1 cut(s) 640
Bst6I CTCTTC 3 cut(s) 294, 414, 584
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 523
BstDSI CCRYGG 1 cut(s) 636
BstFNI CGCG 2 cut(s) 39, 447
BstKTI GATC 2 cut(s) 113, 695
BstMAI GTCTC 2 cut(s) 488, 615
BstMBI GATC 2 cut(s) 110, 692
BstMWI GCNNNNNNNGC 1 cut(s) 398
BstUI CGCG 2 cut(s) 39, 447
BstV1I GCAGC 1 cut(s) 550
BstV2I GAAGAC 1 cut(s) 359
BstX2I RGATCY 1 cut(s) 110
BstYI RGATCY 1 cut(s) 110
BsuI GTATCC 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 636
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 37
Csp6I GTAC 2 cut(s) 55, 641
CspCI CAANNNNNGTGG 2 cut(s) 51, 86
CviAII CATG 4 cut(s) 83, 201, 433, 517
CviJI RGCY 7 cut(s) 35, 129, 159, 310, 401, 527, 541
CviKI_1 RGCY 7 cut(s) 35, 129, 159, 310, 401, 527, 541
CviQI GTAC 2 cut(s) 55, 641
DdeI CTNAG 1 cut(s) 523
DpnI GATC 2 cut(s) 112, 694
DpnII GATC 2 cut(s) 110, 692
Eam1104I CTCTTC 3 cut(s) 294, 414, 584
EarI CTCTTC 3 cut(s) 294, 414, 584
Eco130I CCWWGG 2 cut(s) 16, 625
Eco31I GGTCTC 1 cut(s) 615
EcoRI GAATTC 1 cut(s) 170
EcoT14I CCWWGG 2 cut(s) 16, 625
ErhI CCWWGG 2 cut(s) 16, 625
FaeI CATG 4 cut(s) 86, 204, 436, 520
FalI AAGNNNNNCTT 2 cut(s) 411, 443
FatI CATG 4 cut(s) 82, 200, 432, 516
FblI GTMKAC 1 cut(s) 579
Fnu4HI GCNGC 1 cut(s) 539
Fsp4HI GCNGC 1 cut(s) 539
FspBI CTAG 1 cut(s) 288
GluI GCNGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 86, 204, 436, 520
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HinfI GANTC 1 cut(s) 74
HphI GGTGA 4 cut(s) 5, 305, 487, 503
Hpy166II GTNNAC 3 cut(s) 55, 580, 643
Hpy188I TCNGA 3 cut(s) 110, 372, 692
Hpy8I GTNNAC 3 cut(s) 55, 580, 643
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 640
HpyCH4IV ACGT 2 cut(s) 358, 547
HpyCH4V TGCA 2 cut(s) 392, 538
HpyF10VI GCNNNNNNNGC 1 cut(s) 398
HpyF3I CTNAG 1 cut(s) 523
HpySE526I ACGT 2 cut(s) 358, 547
Hsp92II CATG 4 cut(s) 86, 204, 436, 520
Kzo9I GATC 2 cut(s) 110, 692
LmnI GCTCC 1 cut(s) 513
LpnPI CCDG 4 cut(s) 43, 135, 265, 383
Lsp1109I GCAGC 1 cut(s) 550
LweI GCATC 1 cut(s) 205
MaeI CTAG 1 cut(s) 288
MaeII ACGT 2 cut(s) 358, 547
MaeIII GTNAC 2 cut(s) 11, 475
MalI GATC 2 cut(s) 112, 694
MboI GATC 2 cut(s) 110, 692
MboII GAAGA 6 cut(s) 308, 311, 359, 431, 598, 601
MflI RGATCY 1 cut(s) 110
MluCI AATT 7 cut(s) 170, 177, 186, 196, 233, 317, 450
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 3 cut(s) 14, 198, 649
MseI TTAA 3 cut(s) 189, 323, 453
MvnI CGCG 2 cut(s) 39, 447
MwoI GCNNNNNNNGC 1 cut(s) 398
NdeII GATC 2 cut(s) 110, 692
NlaIII CATG 4 cut(s) 86, 204, 436, 520
NlaIV GGNNCC 2 cut(s) 48, 112
NmuCI GTSAC 2 cut(s) 11, 475
PfeI GAWTC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 1 cut(s) 540
Psp1406I AACGTT 1 cut(s) 547
PspN4I GGNNCC 2 cut(s) 48, 112
PsuI RGATCY 1 cut(s) 110
RsaI GTAC 2 cut(s) 56, 642
RsaNI GTAC 2 cut(s) 55, 641
SalI GTCGAC 1 cut(s) 578
SaqAI TTAA 3 cut(s) 189, 323, 453
SatI GCNGC 1 cut(s) 539
Sau3AI GATC 2 cut(s) 110, 692
SetI ASST 5 cut(s) 72, 131, 361, 529, 550
SfaNI GCATC 1 cut(s) 205
Sse9I AATT 7 cut(s) 170, 177, 186, 196, 233, 317, 450
SsiI CCGC 3 cut(s) 39, 447, 564
SspI AATATT 1 cut(s) 616
SspMI CTAG 1 cut(s) 288
StyI CCWWGG 2 cut(s) 16, 625
TaaI ACNGT 1 cut(s) 640
TaiI ACGT 2 cut(s) 361, 550
TaqI TCGA 1 cut(s) 579
TasI AATT 7 cut(s) 170, 177, 186, 196, 233, 317, 450
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 3 cut(s) 189, 323, 453
Tru9I TTAA 3 cut(s) 189, 323, 453
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 2 cut(s) 11, 475
TseI GCWGC 1 cut(s) 538
Tsp45I GTSAC 2 cut(s) 11, 475
TspDTI ATGAA 2 cut(s) 189, 198
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 1 cut(s) 154
Van91I CCANNNNNTGG 1 cut(s) 201
XapI RAATTY 3 cut(s) 170, 177, 317
XmiI GTMKAC 1 cut(s) 579
XspI CTAG 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.