AT2G17830

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0000186
Physical Location & Seq
Forward (+)
7754048 .. 7755604
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17830.1

Sequence Viewer

Length: 1185 bp
ATGGCGATAATGTCAGATCTTCCACGGGATTTGTTAGCAGAGATTCTCAGTAGGGTTCCATTGGCATCTTTAAGATCAGTGCGGTTCACTTGCAAAAAATGGAACGATTTATCCAAAGATCGGAGCTTTCTCAAGAAACAAATCGTCGAAGCAAAGAAGAAGCAATTGAAATCGAAGGAGTTTGAGGTGATCATGATGAGGAATTTTAGAGTTTATCTAACGAGCGTCGATCTCCACAACGATGTTAATCCATCTTTTACGCCTAAAGGTACACTTACTAGCTTTAGCGATGATGCAAATCAGCATCAAGTCGATAATGTGTCTAGTGTCTTTCACTGCGATGGTTTACTCTTATGCATCACCAAAGACCTCAACTTTAGGCTTGTGGTTTGGAACCCTTATTTTGGGCAAACAAGATGGATCCAACCCAGAAATTCTTACCACATAAAGGACATTTACGCTATTGGGTACGATGAGAATAAGAACCACAAAATCCTGAGATTGAAGGATCAGTATTACGATTATGATTCACATCCACGGGCACGGATTTGTGAGTTTGAACTCTACAGTTTTGAGTCTAATTCATGGAAGGTTGTTCTTGATGTTAGTCCTGACTGGTATATACACTCTTATCACCGTGGCTTGTCTGTAAAGGGGAATACTTACTGGTATGCAACAGAGAAGCATGGCTATGTTAATTTCTTGATCTGTTTTGATTTCACAACTGAGAAATTTGGACCGCGTTTGCCTCTGCCTTTTAACGCTACCGAGTCTTTTACTTATGATGATGTTGTTACTCTCTCTAGTGTTGGAGAAGAGCAGCTTGCGCTGTTGTTTCAGAGTGATGCTACATTGATGATGGAGATTTGGGTTACGAGCAAGGTTGACCCCACAGAGGTTTTGTGGAACAAATTGTTCTTAGCGGTTGATCATGATATGATAGAATTCGACTATGAGTTAAAGTTTGTGGCAGACGCTGGGAGTTTCTTCATTGACCAGAAGAAGAATGTTGTTGTGGTTTTTGATAAAGATATGAATGAGCATACCCATCGTGGCATGGCTTACATTGTTGGGAAGAACGGATACTTCAAAAGAGTGGATATTGGGGAAGAAGCATACACGAGTTGTTTCCCACTTGTCTGTTCTTATGTTCCAAGCTCAGTGCAAATCAGGCAGCTAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

394

Amino Acids

46.01

Weight (kDa)

6.19

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 1.2e-10 F-box domain
F-box-like PF12937 4 - 44 2.1e-08 F-box-like
FBA_1 PF07734 63 - 390 5.4e-111 F-box associated beta propeller domain
FBA_3 PF08268 99 - 345 9e-14 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 742
AciI CCGC 3 cut(s) 82, 740, 923
AclWI GGATC 3 cut(s) 415, 428, 516
AcsI RAATTY 4 cut(s) 202, 433, 731, 944
AfaI GTAC 2 cut(s) 271, 470
AfiI CCNNNNNNNGG 4 cut(s) 120, 404, 448, 895
AgsI TTSAA 4 cut(s) 169, 505, 560, 1090
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 5 cut(s) 126, 282, 823, 1158, 1177
AluI AGCT 5 cut(s) 126, 282, 823, 1158, 1177
AlwI GGATC 3 cut(s) 415, 428, 516
AlwNI CAGNNNCTG 1 cut(s) 977
ApeKI GCWGC 2 cut(s) 820, 1174
ApoI RAATTY 4 cut(s) 202, 433, 731, 944
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 1 cut(s) 737
AsuHPI GGTGA 3 cut(s) 199, 352, 626
AvaII GGWCC 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 420
BarI GAAGNNNNNNTAC 2 cut(s) 1067, 1099
BauI CACGAG 1 cut(s) 1120
BbvI GCAGC 1 cut(s) 832
BccI CCATC 5 cut(s) 259, 335, 411, 853, 1056
BcgI CGANNNNNNTGC 2 cut(s) 1031, 1065
BciVI GTATCC 1 cut(s) 1076
BclI TGATCA 2 cut(s) 189, 928
BfaI CTAG 3 cut(s) 279, 324, 804
BfmI CTRYAG 1 cut(s) 565
BfuI GTATCC 1 cut(s) 1076
BglII AGATCT 1 cut(s) 16
BisI GCNGC 2 cut(s) 821, 1175
BlsI GCNGC 2 cut(s) 822, 1176
Bme18I GGWCC 1 cut(s) 737
BmgT120I GGNCC 1 cut(s) 737
BmiI GGNNCC 3 cut(s) 57, 395, 422
BmsI GCATC 5 cut(s) 74, 283, 313, 366, 835
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 3 cut(s) 246, 297, 531
BsaJI CCNNGG 3 cut(s) 23, 536, 637
Bsc4I CCNNNNNNNGG 4 cut(s) 120, 404, 448, 895
Bse1I ACTGG 2 cut(s) 620, 671
Bse8I GATNNNNATC 3 cut(s) 246, 297, 531
BseDI CCNNGG 3 cut(s) 23, 536, 637
BseGI GGATG 1 cut(s) 532
BseJI GATNNNNATC 3 cut(s) 246, 297, 531
BseLI CCNNNNNNNGG 4 cut(s) 120, 404, 448, 895
BseMII CTCAG 4 cut(s) 61, 488, 717, 1173
BseNI ACTGG 2 cut(s) 620, 671
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 1 cut(s) 832
BseYI CCCAGC 1 cut(s) 977
Bsh1236I CGCG 1 cut(s) 742
BslI CCNNNNNNNGG 4 cut(s) 120, 404, 448, 895
Bsp1286I GDGCHC 1 cut(s) 544
Bsp143I GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
BspACI CCGC 3 cut(s) 82, 740, 923
BspCNI CTCAG 4 cut(s) 60, 489, 718, 1172
BspFNI CGCG 1 cut(s) 742
BspHI TCATGA 2 cut(s) 192, 931
BspLI GGNNCC 3 cut(s) 57, 395, 422
BspPI GGATC 3 cut(s) 415, 428, 516
BspQI GCTCTTC 1 cut(s) 810
BsrI ACTGG 2 cut(s) 620, 671
BssECI CCNNGG 3 cut(s) 23, 536, 637
BssMI GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
BssSI CACGAG 1 cut(s) 1120
Bst2BI CACGAG 1 cut(s) 1120
Bst4CI ACNGT 2 cut(s) 569, 638
Bst6I CTCTTC 1 cut(s) 810
BstC8I GCNNGC 1 cut(s) 825
BstDEI CTNAG 5 cut(s) 47, 497, 726, 919, 1159
BstDSI CCRYGG 3 cut(s) 23, 536, 637
BstF5I GGATG 1 cut(s) 532
BstFNI CGCG 1 cut(s) 742
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 9 cut(s) 19, 77, 121, 192, 232, 423, 511, 708, 931
BstMBI GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
BstMWI GCNNNNNNNGC 2 cut(s) 826, 1171
BstSFI CTRYAG 1 cut(s) 565
BstSLI GKGCMC 1 cut(s) 544
BstUI CGCG 1 cut(s) 742
BstV1I GCAGC 1 cut(s) 832
BstX2I RGATCY 2 cut(s) 16, 420
BstYI RGATCY 2 cut(s) 16, 420
BsuI GTATCC 1 cut(s) 1076
BtgI CCRYGG 3 cut(s) 23, 536, 637
BtgZI GCGATG 2 cut(s) 303, 354
BtsCI GGATG 1 cut(s) 532
BtsI GCAGTG 1 cut(s) 334
BtsIMutI CAGTG 3 cut(s) 84, 334, 1167
Cac8I GCNNGC 1 cut(s) 825
CaiI CAGNNNCTG 1 cut(s) 977
CciI TCATGA 2 cut(s) 192, 931
CfoI GCGC 1 cut(s) 829
Cfr13I GGNCC 1 cut(s) 737
CseI GACGC 2 cut(s) 214, 983
Csp6I GTAC 2 cut(s) 270, 469
CspCI CAANNNNNGTGG 2 cut(s) 12, 47
CviAII CATG 5 cut(s) 193, 585, 686, 932, 1057
CviJI RGCY 9 cut(s) 126, 282, 382, 642, 690, 823, 1061, 1158, 1177
CviKI_1 RGCY 9 cut(s) 126, 282, 382, 642, 690, 823, 1061, 1158, 1177
CviQI GTAC 2 cut(s) 270, 469
DdeI CTNAG 5 cut(s) 47, 497, 726, 919, 1159
DpnI GATC 9 cut(s) 18, 76, 120, 191, 231, 422, 510, 707, 930
DpnII GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
Eam1104I CTCTTC 1 cut(s) 810
EarI CTCTTC 1 cut(s) 810
Eco47I GGWCC 1 cut(s) 737
EcoRI GAATTC 1 cut(s) 944
EcoT22I ATGCAT 1 cut(s) 359
FaeI CATG 5 cut(s) 196, 588, 689, 935, 1060
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 807, 839
FatI CATG 5 cut(s) 192, 584, 685, 931, 1056
FbaI TGATCA 2 cut(s) 189, 928
Fnu4HI GCNGC 2 cut(s) 821, 1175
FokI GGATG 1 cut(s) 519
Fsp4HI GCNGC 2 cut(s) 821, 1175
FspBI CTAG 3 cut(s) 279, 324, 804
GlaI GCGC 1 cut(s) 828
GluI GCNGC 2 cut(s) 821, 1175
GsaI CCCAGC 1 cut(s) 981
HgaI GACGC 2 cut(s) 214, 983
HhaI GCGC 1 cut(s) 829
Hin1II CATG 5 cut(s) 196, 588, 689, 935, 1060
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HincII GTYRAC 1 cut(s) 886
HindII GTYRAC 1 cut(s) 886
HinfI GANTC 4 cut(s) 43, 527, 575, 770
HphI GGTGA 3 cut(s) 199, 352, 626
Hpy166II GTNNAC 4 cut(s) 87, 272, 347, 886
Hpy188I TCNGA 3 cut(s) 16, 123, 840
Hpy188III TCNNGA 7 cut(s) 133, 193, 496, 599, 611, 703, 932
Hpy8I GTNNAC 4 cut(s) 87, 272, 347, 886
Hpy99I CGWCG 2 cut(s) 149, 230
HpyAV CCTTC 3 cut(s) 169, 499, 583
HpyCH4III ACNGT 2 cut(s) 569, 638
HpyCH4V TGCA 5 cut(s) 93, 296, 357, 674, 1165
HpyF10VI GCNNNNNNNGC 2 cut(s) 826, 1171
HpyF3I CTNAG 5 cut(s) 47, 497, 726, 919, 1159
Hsp92II CATG 5 cut(s) 196, 588, 689, 935, 1060
HspAI GCGC 1 cut(s) 827
Ksp22I TGATCA 2 cut(s) 189, 928
Kzo9I GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 8 cut(s) 442, 509, 601, 624, 652, 963, 1010, 1156
Lsp1109I GCAGC 1 cut(s) 832
LweI GCATC 5 cut(s) 74, 283, 313, 366, 835
MaeI CTAG 3 cut(s) 279, 324, 804
MaeIII GTNAC 2 cut(s) 793, 871
MalI GATC 9 cut(s) 18, 76, 120, 191, 231, 422, 510, 707, 930
MboI GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
MboII GAAGA 8 cut(s) 11, 169, 827, 979, 1012, 1015, 1087, 1121
MfeI CAATTG 1 cut(s) 164
MflI RGATCY 2 cut(s) 16, 420
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 8 cut(s) 164, 202, 433, 580, 697, 731, 911, 944
MlyI GAGTC 2 cut(s) 584, 779
MmeI TCCRAC 2 cut(s) 448, 790
MnlI CCTC 5 cut(s) 178, 192, 380, 759, 889
Mph1103I ATGCAT 1 cut(s) 359
MseI TTAA 5 cut(s) 71, 246, 696, 759, 959
MslI CAYNNNNRTG 3 cut(s) 240, 339, 690
MunI CAATTG 1 cut(s) 164
MvnI CGCG 1 cut(s) 742
MwoI GCNNNNNNNGC 2 cut(s) 826, 1171
NdeII GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
NlaIII CATG 5 cut(s) 196, 588, 689, 935, 1060
NlaIV GGNNCC 3 cut(s) 57, 395, 422
NsiI ATGCAT 1 cut(s) 359
PagI TCATGA 2 cut(s) 192, 931
PciSI GCTCTTC 1 cut(s) 810
PfeI GAWTC 2 cut(s) 43, 527
PkrI GCNGC 2 cut(s) 822, 1176
PleI GAGTC 2 cut(s) 583, 778
PpsI GAGTC 2 cut(s) 583, 778
PspFI CCCAGC 1 cut(s) 977
PspN4I GGNNCC 3 cut(s) 57, 395, 422
PspPI GGNCC 1 cut(s) 737
PstNI CAGNNNCTG 1 cut(s) 977
PsuI RGATCY 2 cut(s) 16, 420
RsaI GTAC 2 cut(s) 271, 470
RsaNI GTAC 2 cut(s) 270, 469
RseI CAYNNNNRTG 3 cut(s) 240, 339, 690
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 5 cut(s) 71, 246, 696, 759, 959
SatI GCNGC 2 cut(s) 821, 1175
Sau3AI GATC 9 cut(s) 16, 74, 118, 189, 229, 420, 508, 705, 928
Sau96I GGNCC 1 cut(s) 737
SchI GAGTC 2 cut(s) 584, 779
SduI GDGCHC 1 cut(s) 544
SfaNI GCATC 5 cut(s) 74, 283, 313, 366, 835
SfcI CTRYAG 1 cut(s) 565
SinI GGWCC 1 cut(s) 737
SmiMI CAYNNNNRTG 3 cut(s) 240, 339, 690
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 8 cut(s) 164, 202, 433, 580, 697, 731, 911, 944
SsiI CCGC 3 cut(s) 82, 740, 923
SspMI CTAG 3 cut(s) 279, 324, 804
TaaI ACNGT 2 cut(s) 569, 638
TaqI TCGA 5 cut(s) 147, 173, 228, 312, 948
TasI AATT 8 cut(s) 164, 202, 433, 580, 697, 731, 911, 944
TfiI GAWTC 2 cut(s) 43, 527
Tru1I TTAA 5 cut(s) 71, 246, 696, 759, 959
Tru9I TTAA 5 cut(s) 71, 246, 696, 759, 959
TscAI CASTG 3 cut(s) 84, 341, 1167
TseI GCWGC 2 cut(s) 820, 1174
TspDTI ATGAA 3 cut(s) 573, 979, 1049
TspGWI ACGGA 2 cut(s) 559, 1095
TspRI CASTG 3 cut(s) 84, 341, 1167
VpaK11BI GGWCC 1 cut(s) 737
XapI RAATTY 4 cut(s) 202, 433, 731, 944
XspI CTAG 3 cut(s) 279, 324, 804
Zsp2I ATGCAT 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.