AT5G36820

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0000186
Physical Location & Seq
Forward (+)
14495617 .. 14496849
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G36820.1

Sequence Viewer

Length: 1233 bp
ATGGCGATGTCCAATCTTCCAAGAGATTTGTTGGAGGAGGTACTCTCTAGGGTTCCGGTAAAGTCTATAGCAGCAGTGAGATCCACTTGTAAAAATTGGAACTCTTTAACCTACGGTCAGAGCTTCACGAAGAAGCTCTATGGTAAAACAATGGCAACAAAGGAAAAGGAGTTTCTGGTGGTCATGACTATGGATTTGGAGGTTTATTTAATGAGGGTCAATCTCCATGGAATTCATAAAGATGATAACAATGTTAAATCATCTATCATGCAAAAAGCTAAACTCATTAGGCTAAATGATGATCGAGTTCGAGTCGATGATATATGTAAAGTCTTTCACTGCGACGGTTTATTGTTATGCATCACTATTGGGATCAGGCTTGTGGTTTGTAATCCTTATTGTGGGCAAACAAGGTGTATCAAAACCAGAAGAGATTACCATATAACCGACAATTACGCTCTTGGACACGAGAAGATGAAGAACAGCCCACTTCGTAACTACAAAATCTTGGTGTTTCATGATAAATCCTTCCTCCAAAATTCTTGGTTTGAAATCTACAATTTTAACTCTGATTCATGGAAGGTTTTATATTTCACTTGTGACTGGAAATTACCGTTTTCTCAACTTGTTGTGTCTCTCAAGGGAAATACTTACTGGTTTGCTCGAGAGATGTATATACACGGACCAAGAATAGATCTCCCTGATTTCTTGATTTGTTTTGATTTTACAACAGAGAGATTTGGACCGCGTCTTCATCTGCCGTTTCACTCTCGTTGTGTTGATACTGTGACTCTCGCTAGTGTTAGAGAAGAGCAGCTTGCGGTGTTATTTCAGGACTCAAAAACGTTGATCCTAGAGGTATGGATAACGACTAAGATTGAGCCTAATGCGGTCTCATGGAGCAGCAAGGTGTTCTTAGAAGTGAATATGAGTCCACTCACTGGTTTTCAGTTTAATCGTAGCTTTGGGAGTTTCTTCATTGTTGAGGAGAAAAATGTCGTTGTGGTTCCTATTAAAGGAGGGCATTTCAAACGAAACCTAGCTTACATCATTGGAAAGGATGAATACTTCAAAGAAGTGGATCTTGGAGTGCCAAGTTCATATATATATTTTTCCCCACATGTGTGCTCTTATGTTCCAAGTTTAGTACAAATCAAGAAAGATGCACAAGTGATGCTGCAACACCATAACGTCTCAGCAGAAAAGCATCATGAGTTTTGTGCATCTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

410

Amino Acids

47.61

Weight (kDa)

8.85

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 3 - 43 3.6e-10 F-box domain
F-box-like PF12937 3 - 46 6.8e-07 F-box-like
FBA_1 PF07734 60 - 385 4.7e-106 F-box associated beta propeller domain
FBA_3 PF08268 110 - 339 2.8e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11608 AT1G11620 AT1G11810 AT1G12170 AT1G12190 AT1G24800 AT1G24881 AT1G25055 AT1G25141 AT1G25150 AT1G25150 AT1G25211 AT1G31510 AT1G32140 AT1G32430 AT1G47390 AT1G50470 AT1G51290 AT1G51320 AT1G53325 AT1G54550 AT1G58090 AT1G59630 AT1G59680 AT1G59680 AT1G62270 AT1G65990 AT1G66490 AT1G67450 AT1G67455 AT1G67455 AT1G77650 AT1G77655 AT2G04920 AT2G07120 AT2G07140 AT2G07140 AT2G11200 AT2G14710 AT2G17310 AT2G17830 AT2G18780 AT2G24510 AT2G27520 AT2G33655 AT2G38590 AT2G39355 AT3G03405 AT3G04250 AT3G08750 AT3G10430 AT3G13680 AT3G13820 AT3G13830 AT3G14030 AT3G16020 AT3G16020 AT3G16020 AT3G16555 AT3G16580 AT3G16590 AT3G16740 AT3G16820 AT3G16880 AT3G17265 AT3G17270 AT3G17280 AT3G17280 AT3G17320 AT3G17400 AT3G17480 AT3G17490 AT3G17500 AT3G17500 AT3G17530 AT3G17540 AT3G17560 AT3G17570 AT3G17620 AT3G17710 AT3G18120 AT3G18320 AT3G18330 AT3G18340 AT3G18905 AT3G18910 AT3G18980 AT3G18980 AT3G19410 AT3G19470 AT3G19470 AT3G19560 AT3G19565 AT3G19880 AT3G19890 AT3G20030 AT3G20400 AT3G20690 AT3G20700 AT3G20710 AT3G21120 AT3G21130 AT3G21170 AT3G21410 AT3G22350 AT3G22350 AT3G22421 AT3G22650 AT3G22650 AT3G22700 AT3G22710 AT3G22720 AT3G22730 AT3G22770 AT3G22870 AT3G22940 AT3G23260 AT3G23420 AT3G23420 AT3G23633 AT3G23633 AT3G23680 AT3G23685 AT3G24580 AT3G24700 AT3G24700 AT3G25090 AT3G25090 AT3G25460 AT3G44120 AT3G44130 AT3G49510 AT3G49520 AT3G49980 AT3G49980 AT3G51171 AT3G59590 AT3G59610 AT4G04690 AT4G05080 AT4G09870 AT4G10190 AT4G10740 AT4G17200 AT4G33290 AT5G25195 AT5G36190 AT5G36200 AT5G36730 AT5G36820 AT5G37040 AT5G41490 AT5G41500 AT5G41510 AT5G42460 AT5G47300 AT5G51000 AT5G60560 AT5G60560 AT5G62830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 941
AccII CGCG 1 cut(s) 748
AciI CCGC 3 cut(s) 746, 821, 890
AclI AACGTT 1 cut(s) 845
AclWI GGATC 4 cut(s) 75, 380, 844, 1089
AcsI RAATTY 2 cut(s) 231, 538
AfaI GTAC 2 cut(s) 42, 1149
AfiI CCNNNNNNNGG 3 cut(s) 401, 941, 1016
AflIII ACRYGT 1 cut(s) 1120
AgsI TTSAA 3 cut(s) 551, 1030, 1072
AjuI GAANNNNNNNTTGG 2 cut(s) 1068, 1100
AleI CACNNNNGTG 1 cut(s) 1123
AluBI AGCT 6 cut(s) 123, 136, 278, 817, 963, 1043
AluI AGCT 6 cut(s) 123, 136, 278, 817, 963, 1043
Alw21I GWGCWC 1 cut(s) 1130
Alw26I GTCTC 3 cut(s) 639, 898, 1198
AlwI GGATC 4 cut(s) 75, 380, 844, 1089
Ama87I CYCGRG 1 cut(s) 663
ApeKI GCWGC 4 cut(s) 71, 814, 903, 1177
ApoI RAATTY 2 cut(s) 231, 538
ArsI GACNNNNNNTTYG 2 cut(s) 178, 210
AspS9I GGNCC 2 cut(s) 683, 743
AvaI CYCGRG 1 cut(s) 663
AvaII GGWCC 2 cut(s) 683, 743
BauI CACGAG 1 cut(s) 467
BbsI GAAGAC 1 cut(s) 743
Bbv12I GWGCWC 1 cut(s) 1130
BbvI GCAGC 4 cut(s) 83, 826, 915, 1164
BceAI ACGGC 1 cut(s) 745
BcoDI GTCTC 3 cut(s) 639, 898, 1198
BfaI CTAG 4 cut(s) 48, 798, 854, 1040
BfmI CTRYAG 1 cut(s) 66
BglII AGATCT 1 cut(s) 694
BisI GCNGC 4 cut(s) 72, 815, 904, 1178
BlsI GCNGC 4 cut(s) 73, 816, 905, 1179
Bme18I GGWCC 2 cut(s) 683, 743
BmeT110I CYCGRG 1 cut(s) 663
BmgT120I GGNCC 2 cut(s) 683, 743
BmiI GGNNCC 2 cut(s) 54, 1008
BmsI GCATC 4 cut(s) 369, 1153, 1164, 1216
BpiI GAAGAC 1 cut(s) 743
BplI GAGNNNNNCTC 2 cut(s) 29, 61
BpuEI CTTGAG 1 cut(s) 623
BsaI GGTCTC 1 cut(s) 898
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 55
Bsc4I CCNNNNNNNGG 3 cut(s) 401, 941, 1016
Bse1I ACTGG 3 cut(s) 608, 659, 946
BseDI CCNNGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 1066
BseLI CCNNNNNNNGG 3 cut(s) 401, 941, 1016
BseMII CTCAG 1 cut(s) 1209
BseNI ACTGG 3 cut(s) 608, 659, 946
BseRI GAGGAG 2 cut(s) 50, 1001
BseXI GCAGC 4 cut(s) 83, 826, 915, 1164
Bsh1236I CGCG 1 cut(s) 748
BsiHKAI GWGCWC 1 cut(s) 1130
BsiHKCI CYCGRG 1 cut(s) 663
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 3 cut(s) 401, 941, 1016
BsmAI GTCTC 3 cut(s) 639, 898, 1198
BsmBI CGTCTC 1 cut(s) 1198
Bso31I GGTCTC 1 cut(s) 898
BsoBI CYCGRG 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 1130
Bsp143I GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 3 cut(s) 746, 821, 890
BspCNI CTCAG 1 cut(s) 1208
BspFNI CGCG 1 cut(s) 748
BspHI TCATGA 3 cut(s) 183, 517, 1210
BspLI GGNNCC 2 cut(s) 54, 1008
BspPI GGATC 4 cut(s) 75, 380, 844, 1089
BspQI GCTCTTC 1 cut(s) 804
BspTNI GGTCTC 1 cut(s) 898
BsrI ACTGG 3 cut(s) 608, 659, 946
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
BssSI CACGAG 1 cut(s) 467
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 467
Bst4CI ACNGT 4 cut(s) 116, 347, 615, 787
Bst6I CTCTTC 2 cut(s) 424, 804
BstC8I GCNNGC 1 cut(s) 819
BstDEI CTNAG 3 cut(s) 873, 916, 1195
BstDSI CCRYGG 1 cut(s) 226
BstENI CCTNNNNNAGG 1 cut(s) 1014
BstF5I GGATG 1 cut(s) 1066
BstFNI CGCG 1 cut(s) 748
BstKTI GATC 6 cut(s) 83, 304, 375, 697, 852, 1084
BstMAI GTCTC 3 cut(s) 639, 898, 1198
BstMBI GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
BstNSI RCATGY 1 cut(s) 1124
BstSFI CTRYAG 1 cut(s) 66
BstUI CGCG 1 cut(s) 748
BstV1I GCAGC 4 cut(s) 83, 826, 915, 1164
BstV2I GAAGAC 1 cut(s) 743
BstX2I RGATCY 3 cut(s) 80, 694, 1081
BstYI RGATCY 3 cut(s) 80, 694, 1081
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 1066
BtsI GCAGTG 2 cut(s) 81, 337
BtsIMutI CAGTG 3 cut(s) 81, 337, 939
Cac8I GCNNGC 1 cut(s) 819
CciI TCATGA 3 cut(s) 183, 517, 1210
Cfr13I GGNCC 2 cut(s) 683, 743
CseI GACGC 1 cut(s) 737
Csp6I GTAC 2 cut(s) 41, 1148
CviAII CATG 8 cut(s) 184, 227, 268, 518, 576, 897, 1121, 1211
CviQI GTAC 2 cut(s) 41, 1148
DdeI CTNAG 3 cut(s) 873, 916, 1195
DpnI GATC 6 cut(s) 82, 303, 374, 696, 851, 1083
DpnII GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
Eam1104I CTCTTC 2 cut(s) 424, 804
EarI CTCTTC 2 cut(s) 424, 804
Eco130I CCWWGG 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 898
Eco47I GGWCC 2 cut(s) 683, 743
Eco88I CYCGRG 1 cut(s) 663
EcoNI CCTNNNNNAGG 1 cut(s) 1014
EcoRI GAATTC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 1198
FaeI CATG 8 cut(s) 187, 230, 271, 521, 579, 900, 1124, 1214
FalI AAGNNNNNCTT 6 cut(s) 801, 833, 899, 931, 1068, 1100
FatI CATG 8 cut(s) 183, 226, 267, 517, 575, 896, 1120, 1210
Fnu4HI GCNGC 4 cut(s) 72, 815, 904, 1178
FokI GGATG 1 cut(s) 1073
Fsp4HI GCNGC 4 cut(s) 72, 815, 904, 1178
FspBI CTAG 4 cut(s) 48, 798, 854, 1040
GluI GCNGC 4 cut(s) 72, 815, 904, 1178
HapII CCGG 1 cut(s) 56
HgaI GACGC 1 cut(s) 737
Hin1II CATG 8 cut(s) 187, 230, 271, 521, 579, 900, 1124, 1214
HinfI GANTC 5 cut(s) 312, 572, 790, 836, 931
HpaII CCGG 1 cut(s) 56
Hpy166II GTNNAC 1 cut(s) 935
Hpy188I TCNGA 2 cut(s) 120, 571
Hpy188III TCNNGA 8 cut(s) 127, 184, 518, 665, 709, 833, 1156, 1211
Hpy8I GTNNAC 1 cut(s) 935
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 2 cut(s) 538, 574
HpyCH4III ACNGT 4 cut(s) 116, 347, 615, 787
HpyCH4IV ACGT 2 cut(s) 845, 1191
HpyCH4V TGCA 5 cut(s) 271, 360, 1166, 1180, 1223
HpyF3I CTNAG 3 cut(s) 873, 916, 1195
HpySE526I ACGT 2 cut(s) 845, 1191
Hsp92II CATG 8 cut(s) 187, 230, 271, 521, 579, 900, 1124, 1214
Kzo9I GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 1 cut(s) 900
LpnPI CCDG 9 cut(s) 69, 161, 361, 439, 589, 640, 714, 818, 927
Lsp1109I GCAGC 4 cut(s) 83, 826, 915, 1164
LweI GCATC 4 cut(s) 369, 1153, 1164, 1216
MaeI CTAG 4 cut(s) 48, 798, 854, 1040
MaeII ACGT 2 cut(s) 845, 1191
MaeIII GTNAC 3 cut(s) 494, 599, 787
MalI GATC 6 cut(s) 82, 303, 374, 696, 851, 1083
MboI GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
MboII GAAGA 8 cut(s) 8, 142, 441, 484, 490, 743, 821, 967
MflI RGATCY 3 cut(s) 80, 694, 1081
MhlI GDGCHC 1 cut(s) 1130
MluCI AATT 6 cut(s) 94, 231, 451, 538, 559, 608
MlyI GAGTC 4 cut(s) 321, 784, 830, 940
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 8 cut(s) 28, 31, 193, 207, 542, 850, 979, 1013
Mph1103I ATGCAT 1 cut(s) 362
MseI TTAA 6 cut(s) 107, 209, 255, 564, 954, 1014
MslI CAYNNNNRTG 4 cut(s) 188, 240, 1123, 1228
MspI CCGG 1 cut(s) 56
MvnI CGCG 1 cut(s) 748
NcoI CCATGG 1 cut(s) 226
NdeII GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
NlaIII CATG 8 cut(s) 187, 230, 271, 521, 579, 900, 1124, 1214
NlaIV GGNNCC 2 cut(s) 54, 1008
NmuCI GTSAC 2 cut(s) 599, 787
NsiI ATGCAT 1 cut(s) 362
NspI RCATGY 1 cut(s) 1124
OliI CACNNNNGTG 1 cut(s) 1123
PaeR7I CTCGAG 1 cut(s) 663
PagI TCATGA 3 cut(s) 183, 517, 1210
PciI ACATGT 1 cut(s) 1120
PciSI GCTCTTC 1 cut(s) 804
PfeI GAWTC 1 cut(s) 572
PflFI GACNNNGTC 1 cut(s) 747
PflMI CCANNNNNTGG 1 cut(s) 941
PkrI GCNGC 4 cut(s) 73, 816, 905, 1179
PleI GAGTC 4 cut(s) 320, 784, 830, 939
PpsI GAGTC 4 cut(s) 320, 784, 830, 939
PscI ACATGT 1 cut(s) 1120
Psp1406I AACGTT 1 cut(s) 845
PspN4I GGNNCC 2 cut(s) 54, 1008
PspPI GGNCC 2 cut(s) 683, 743
PsuI RGATCY 3 cut(s) 80, 694, 1081
PsyI GACNNNGTC 1 cut(s) 747
RsaI GTAC 2 cut(s) 42, 1149
RsaNI GTAC 2 cut(s) 41, 1148
RseI CAYNNNNRTG 4 cut(s) 188, 240, 1123, 1228
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 6 cut(s) 107, 209, 255, 564, 954, 1014
SatI GCNGC 4 cut(s) 72, 815, 904, 1178
Sau3AI GATC 6 cut(s) 80, 301, 372, 694, 849, 1081
Sau96I GGNCC 2 cut(s) 683, 743
SchI GAGTC 4 cut(s) 321, 784, 830, 940
SduI GDGCHC 1 cut(s) 1130
SfaNI GCATC 4 cut(s) 369, 1153, 1164, 1216
SfcI CTRYAG 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 663
SinI GGWCC 2 cut(s) 683, 743
SlaI CTCGAG 1 cut(s) 663
SmiMI CAYNNNNRTG 4 cut(s) 188, 240, 1123, 1228
SmlI CTYRAG 2 cut(s) 638, 663
SmoI CTYRAG 2 cut(s) 638, 663
Sse9I AATT 6 cut(s) 94, 231, 451, 538, 559, 608
SsiI CCGC 3 cut(s) 746, 821, 890
SspMI CTAG 4 cut(s) 48, 798, 854, 1040
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 4 cut(s) 116, 347, 615, 787
TaiI ACGT 2 cut(s) 848, 1194
TaqI TCGA 4 cut(s) 304, 310, 315, 664
TasI AATT 6 cut(s) 94, 231, 451, 538, 559, 608
TatI WGTACW 1 cut(s) 1147
TfiI GAWTC 1 cut(s) 572
Tru1I TTAA 6 cut(s) 107, 209, 255, 564, 954, 1014
Tru9I TTAA 6 cut(s) 107, 209, 255, 564, 954, 1014
TscAI CASTG 3 cut(s) 81, 344, 946
TseFI GTSAC 2 cut(s) 599, 787
TseI GCWGC 4 cut(s) 71, 814, 903, 1177
Tsp45I GTSAC 2 cut(s) 599, 787
TspDTI ATGAA 8 cut(s) 224, 491, 506, 564, 743, 967, 1077, 1089
TspGWI ACGGA 1 cut(s) 696
TspRI CASTG 3 cut(s) 81, 344, 946
Tth111I GACNNNGTC 1 cut(s) 747
Van91I CCANNNNNTGG 1 cut(s) 941
VpaK11BI GGWCC 2 cut(s) 683, 743
XagI CCTNNNNNAGG 1 cut(s) 1014
XapI RAATTY 2 cut(s) 231, 538
XceI RCATGY 1 cut(s) 1124
XhoI CTCGAG 1 cut(s) 663
XspI CTAG 4 cut(s) 48, 798, 854, 1040
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.